Rh3BG053800

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007241
Physical Location & Seq
Reverse (-)
3672405 .. 3679549
7145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG053800.1

Sequence Viewer

Length: 2130 bp
ATGAAGAAGAACCTTTACAACGGCAACAACACGAAAGTTCAGACTAATCATCATCACAGCAATAATGGCTTCCTTCCTAATTCTCTGAAATTCATTTCCTCTTGCATTAAGACCGCCTCCTCCGGCGTCCGGTCGGCCAGCGCCTCCGTTGCCGCTTCCATCTCCGCTGACCCGCACGAGTCCCGAGACCAGGTGTTGTGGGCATGCTTTGACAGACTAGATCTTGGTCCATCTTCCTTCAAACATGTTCTGCTACTCGGTTATGTCAATGGCTTTCAAGTCCTTGATGTTGAAGATGCCTCTGATGTCAGTGAGCTTGTATCAAAACGTGATGATCCAGTCACATTTTTACAGATCCAGCCCCTGCCTAGAATCTCTCAAGGTCCTGAAGGATTCAGATCTTCGCATCCATTACTCATGGTTGTTGCATGTGAAGAATCAAAGAACTCTGGTATGACACAAAATGGAAGAGATGGTTTGGTAAATGGTTATACTGAGCCTCAAACAAGCAACTCTGCTATGTCTCCTAGAGTTGTTCGGTTTTATTCACTAAGGTCTCACAGTTATGTTCATGTTCTGAGATTCCGCTCGACTGTGTATATGGTTAGATGCAGTCCTCAGATAGTGGCTGTTGGTCTTGCCTCTCAAATATACTGCTTTGATGCTGTCACTCTAGAGAACAAGTTCAGTGTTCTTACTTATCCTGTCCCCCAGTTGGGAGTCCAAGGACTGGTTGGGGTTAATATTGGATATGGTCCCATGGCTGTTGGTCCCAGGTGGTTGGCTTATGCCTCCAACAACCCTTTACTGTCAAACACTTGCCGACTAAGCCCGCAAAGTCTTACACCTCCAGGTGTCAGTCCATCAACTTCACCAAGTAATGGAAATCCGGTGGCTCGGTATGCCATGGAATCTAGTAAGCAGTTAGCTGCTGGGTTGCTAAATCTGGGAGACATGGGCTACAAAACTTTGTCTAAGTACTATCAACCAGATGGTTCCAGCTCTCCAGTGTCATCAAATTCTATCTGGAAAGTTGGGAAGGTTGGATCACATTCAACAGAAACAGATATTGCTGGAATGGTTGTTGTAAAAGACATTGTTTCCAGGGCGGTCGTTTCACAATTTAGGGCACATACTAGTCCCATTTCTGCTCTATGTTTTGACCCAAGTGGGACTCTCCTTGTTACTGCCTCGATACATGGAAACAATATTAACATTTTTCGGATAATGCCATCACGTACTGGATCTGGCACCCAGAACTATGACTTGAATTCCTCTCATGTGCACCTTTACAAGCTCCATCGTGGCATGACATCAGCTGTAATCCAAGACATATGTTTTAGTCAATACAGTCAATGGATTACAATTGTTTCATCGAGGGGAACTTGCCATATTTTTACTTTTTCCCCCTTTGGTGGTGATACTACTCACAAGCAGAGTTCTCATGTTGATGGGCCTAGTCATTTGCCAGTTCCGTCTGTACCGTGGTGGTTCACTCCTTATTTCCTGACAAACCAGCAACTTTTTTCTCCACCACCACCCCCTGTTACCCTTTCTGTGGTTAGCAGAATAAAAGATAACTCCGGGTGGATCAATACAGTTAGTCATGCTGCTTCTTCTGCAGCCGGAAAAGCTTCCATTCCATCCGGCGCTGTTACTGCTGTATTTCATAATTCTGTTGCTCATGATCTGCAAACTTCTCATTTAAAGGTAACAGCTCTGGAGCACCTATTGGTTTACACTCCTTCTGGTCATGCAGTACAGTTTAAACTACTTCCAAGAGTTGGGATAGAGCCTGGTGAAGCTACATCAAGAACAGTGCCAGGCTCTTCAGTACAAATACAGGATGAGGAGTTGCGAGTGAAAGTTGAACCTCTGCAGTGGTGGGATGTTTGCCGAAGAACTGATTGGCCTGAAAGAGAGGAATGCATTTCTGGGATTAAACTTGGGAGACAAGAAGATGAGGAGACAGTCATGGATACTTTTGATTGTGATGTTAATGATATTGGGGATAAGGAGTCGGTGAAACCGCTTGAGCGATCTCACTTGTATCTCGCCAACGCTGAGGTTCAGATTAACTGTGGAAGGATTCCAATCTGGCAAAAGTCTAAGGTATCTTTTATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

709

Amino Acids

77.48

Weight (kDa)

8.14

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 83 - 476 1e-35 BCAS3, WD40 repeat
BCAS3 PF12490 612 - 707 6.7e-30 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1250
AccB7I CCANNNNNTGG 3 cut(s) 730, 881, 1784
AccBSI CCGCTC 1 cut(s) 588
AciI CCGC 8 cut(s) 114, 153, 165, 173, 586, 833, 1109, 2030
AclWI GGATC 5 cut(s) 329, 349, 1054, 1252, 1598
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 3 cut(s) 89, 1018, 1270
AcuI CTGAAG 2 cut(s) 408, 1815
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 5 cut(s) 980, 1240, 1482, 1761, 1836
AfiI CCNNNNNNNGG 9 cut(s) 129, 190, 715, 716, 730, 881, 1415, 1558, 1784
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 6 cut(s) 241, 278, 293, 1056, 1270, 1871
AhlI ACTAGT 1 cut(s) 1136
AjnI CCWGG 6 cut(s) 189, 773, 850, 1103, 1795, 1822
AjuI GAANNNNNNNTTGG 2 cut(s) 1891, 1923
AluBI AGCT 8 cut(s) 316, 929, 1002, 1297, 1319, 1634, 1718, 1805
AluI AGCT 8 cut(s) 316, 929, 1002, 1297, 1319, 1634, 1718, 1805
Alw21I GWGCWC 2 cut(s) 1287, 1728
Alw26I GTCTC 6 cut(s) 180, 528, 561, 945, 1945, 1961
Alw44I GTGCAC 1 cut(s) 1283
AlwI GGATC 5 cut(s) 329, 349, 1054, 1252, 1598
AlwNI CAGNNNCTG 1 cut(s) 364
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 3 cut(s) 135, 1454, 1910
ApaLI GTGCAC 1 cut(s) 1283
ApeKI GCWGC 3 cut(s) 929, 1610, 1622
ApoI RAATTY 3 cut(s) 89, 1018, 1270
Asp700I GAANNNNTTC 2 cut(s) 683, 1633
AspLEI GCGC 2 cut(s) 143, 1652
AspS9I GGNCC 5 cut(s) 227, 383, 755, 770, 1454
AsuC2I CCSGG 1 cut(s) 1585
AsuHPI GGTGA 4 cut(s) 864, 1430, 1811, 2035
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 4 cut(s) 227, 383, 755, 770
BaeGI GKGCMC 2 cut(s) 1132, 1287
BanI GGYRCC 1 cut(s) 1250
BarI GAAGNNNNNNTAC 1 cut(s) 31
BauI CACGAG 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 1287, 1728
BbvCI CCTCAGC 1 cut(s) 2064
BbvI GCAGC 3 cut(s) 916, 1597, 1634
BccI CCATC 9 cut(s) 167, 238, 467, 871, 986, 1240, 1308, 1445, 1651
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 6 cut(s) 191, 775, 852, 1105, 1797, 1824
BciVI GTATCC 1 cut(s) 1972
BcnI CCSGG 1 cut(s) 1585
BcoDI GTCTC 6 cut(s) 180, 528, 561, 945, 1945, 1961
BcuI ACTAGT 1 cut(s) 1136
BfaI CTAG 7 cut(s) 218, 369, 528, 674, 915, 1137, 1458
BfmI CTRYAG 2 cut(s) 1620, 1877
BfoI RGCGCY 2 cut(s) 144, 1653
BfuI GTATCC 1 cut(s) 1972
BglII AGATCT 2 cut(s) 220, 398
BisI GCNGC 4 cut(s) 153, 930, 1611, 1623
BlsI GCNGC 4 cut(s) 154, 931, 1612, 1624
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 7 cut(s) 191, 775, 852, 1105, 1585, 1797, 1824
Bme18I GGWCC 4 cut(s) 227, 383, 755, 770
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 5 cut(s) 227, 383, 755, 770, 1454
BmiI GGNNCC 4 cut(s) 757, 772, 997, 1252
BmrFI CCNGG 7 cut(s) 191, 775, 852, 1105, 1585, 1797, 1824
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 4 cut(s) 286, 415, 599, 652
BmuI ACTGGG 1 cut(s) 706
BpmI CTGGAG 3 cut(s) 834, 990, 1742
Bpu10I CCTNAGC 1 cut(s) 2064
BpuEI CTTGAG 2 cut(s) 363, 2054
BpuMI CCSGG 1 cut(s) 1585
BsaAI YACGTR 1 cut(s) 1238
BsaBI GATNNNNATC 2 cut(s) 397, 2093
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 2 cut(s) 180, 561
BsaJI CCNNGG 6 cut(s) 724, 759, 773, 906, 1104, 1484
BsaWI WCCGGW 2 cut(s) 129, 889
Bsc4I CCNNNNNNNGG 9 cut(s) 129, 190, 715, 716, 730, 881, 1415, 1558, 1784
Bse1I ACTGG 6 cut(s) 338, 712, 735, 1007, 1246, 1469
Bse8I GATNNNNATC 2 cut(s) 397, 2093
BseBI CCWGG 6 cut(s) 191, 775, 852, 1105, 1797, 1824
BseDI CCNNGG 6 cut(s) 724, 759, 773, 906, 1104, 1484
BseGI GGATG 4 cut(s) 406, 1643, 1852, 1894
BseJI GATNNNNATC 2 cut(s) 397, 2093
BseLI CCNNNNNNNGG 9 cut(s) 129, 190, 715, 716, 730, 881, 1415, 1558, 1784
BseMII CTCAG 4 cut(s) 486, 569, 632, 2055
BseNI ACTGG 6 cut(s) 338, 712, 735, 1007, 1246, 1469
BseRI GAGGAG 3 cut(s) 109, 1865, 1979
BseSI GKGCMC 2 cut(s) 1132, 1287
BseXI GCAGC 3 cut(s) 916, 1597, 1634
BseYI CCCAGC 1 cut(s) 932
Bsh1285I CGRYCG 2 cut(s) 134, 1113
BshFI GGCC 3 cut(s) 137, 1456, 1912
BshNI GGYRCC 1 cut(s) 1250
BsiEI CGRYCG 2 cut(s) 134, 1113
BsiHKAI GWGCWC 2 cut(s) 1287, 1728
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 6 cut(s) 123, 130, 890, 1584, 1626, 1647
BslFI GGGAC 6 cut(s) 166, 692, 741, 756, 1125, 1186
BslI CCNNNNNNNGG 9 cut(s) 129, 190, 715, 716, 730, 881, 1415, 1558, 1784
BsmAI GTCTC 6 cut(s) 180, 528, 561, 945, 1945, 1961
BsmFI GGGAC 6 cut(s) 166, 692, 741, 756, 1125, 1186
BsmI GAATGC 1 cut(s) 1931
BsnI GGCC 3 cut(s) 137, 1456, 1912
Bso31I GGTCTC 2 cut(s) 180, 561
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 3 cut(s) 1132, 1287, 1728
Bsp143I GATC 9 cut(s) 220, 334, 354, 398, 1046, 1244, 1590, 1687, 2039
Bsp19I CCATGG 2 cut(s) 759, 906
BspACI CCGC 8 cut(s) 114, 153, 165, 173, 586, 833, 1109, 2030
BspANI GGCC 3 cut(s) 137, 1456, 1912
BspCNI CTCAG 4 cut(s) 487, 570, 631, 2056
BspHI TCATGA 1 cut(s) 1684
BspLI GGNNCC 4 cut(s) 757, 772, 997, 1252
BspMAI CTGCAG 2 cut(s) 1624, 1881
BspPI GGATC 5 cut(s) 329, 349, 1054, 1252, 1598
BspQI GCTCTTC 1 cut(s) 1834
BspT107I GGYRCC 1 cut(s) 1250
BspTNI GGTCTC 2 cut(s) 180, 561
BsrBI CCGCTC 1 cut(s) 588
BsrI ACTGG 6 cut(s) 338, 712, 735, 1007, 1246, 1469
BssECI CCNNGG 6 cut(s) 724, 759, 773, 906, 1104, 1484
BssMI GATC 9 cut(s) 220, 334, 354, 398, 1046, 1244, 1590, 1687, 2039
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 3 cut(s) 724, 759, 906
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 6 cut(s) 191, 775, 852, 1105, 1797, 1824
Bst6I CTCTTC 2 cut(s) 463, 1834
BstACI GRCGYC 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 1238
BstC8I GCNNGC 3 cut(s) 139, 205, 833
BstDEI CTNAG 8 cut(s) 495, 551, 578, 618, 827, 975, 2064, 2109
BstDSI CCRYGG 3 cut(s) 759, 906, 1484
BstF5I GGATG 4 cut(s) 406, 1643, 1852, 1894
BstH2I RGCGCY 2 cut(s) 144, 1653
BstHHI GCGC 2 cut(s) 143, 1652
BstKTI GATC 9 cut(s) 223, 337, 357, 401, 1049, 1247, 1593, 1690, 2042
BstMAI GTCTC 6 cut(s) 180, 528, 561, 945, 1945, 1961
BstMBI GATC 9 cut(s) 220, 334, 354, 398, 1046, 1244, 1590, 1687, 2039
BstMCI CGRYCG 2 cut(s) 134, 1113
BstMWI GCNNNNNNNGC 7 cut(s) 66, 149, 828, 902, 1619, 1631, 1658
BstNI CCWGG 6 cut(s) 191, 775, 852, 1105, 1797, 1824
BstNSI RCATGY 3 cut(s) 207, 248, 432
BstSCI CCNGG 7 cut(s) 189, 773, 850, 1103, 1583, 1795, 1822
BstSFI CTRYAG 2 cut(s) 1620, 1877
BstSLI GKGCMC 2 cut(s) 1132, 1287
BstV1I GCAGC 3 cut(s) 916, 1597, 1634
BstX2I RGATCY 4 cut(s) 220, 354, 398, 1244
BstXI CCANNNNNNTGG 1 cut(s) 781
BstYI RGATCY 4 cut(s) 220, 354, 398, 1244
BsuI GTATCC 1 cut(s) 1972
BsuRI GGCC 3 cut(s) 137, 1456, 1912
BtgI CCRYGG 3 cut(s) 759, 906, 1484
BtsCI GGATG 4 cut(s) 406, 1643, 1852, 1894
BtsI GCAGTG 1 cut(s) 1886
BtsIMutI CAGTG 5 cut(s) 316, 694, 1014, 1824, 1886
Cac8I GCNNGC 3 cut(s) 139, 205, 833
CaiI CAGNNNCTG 1 cut(s) 364
CciI TCATGA 1 cut(s) 1684
CfoI GCGC 2 cut(s) 143, 1652
Cfr13I GGNCC 5 cut(s) 227, 383, 755, 770, 1454
CseI GACGC 1 cut(s) 115
CsiI ACCWGGT 1 cut(s) 189
Csp6I GTAC 5 cut(s) 979, 1239, 1481, 1760, 1835
CviQI GTAC 5 cut(s) 979, 1239, 1481, 1760, 1835
DdeI CTNAG 8 cut(s) 495, 551, 578, 618, 827, 975, 2064, 2109
DpnI GATC 9 cut(s) 222, 336, 356, 400, 1048, 1246, 1592, 1689, 2041
DpnII GATC 9 cut(s) 220, 334, 354, 398, 1046, 1244, 1590, 1687, 2039
DraI TTTAAA 2 cut(s) 1707, 1768
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 463, 1834
EarI CTCTTC 2 cut(s) 463, 1834
Eco130I CCWWGG 3 cut(s) 724, 759, 906
Eco31I GGTCTC 2 cut(s) 180, 561
Eco47I GGWCC 4 cut(s) 227, 383, 755, 770
Eco57I CTGAAG 2 cut(s) 408, 1815
Eco88I CYCGRG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 1270
EcoRII CCWGG 6 cut(s) 189, 773, 850, 1103, 1795, 1822
EcoT14I CCWWGG 3 cut(s) 724, 759, 906
EcoT22I ATGCAT 1 cut(s) 1931
ErhI CCWWGG 3 cut(s) 724, 759, 906
FaqI GGGAC 6 cut(s) 166, 692, 741, 756, 1125, 1186
FauI CCCGC 2 cut(s) 180, 840
FauNDI CATATG 1 cut(s) 1334
Fnu4HI GCNGC 4 cut(s) 153, 930, 1611, 1623
FokI GGATG 4 cut(s) 393, 1630, 1859, 1901
Fsp4HI GCNGC 4 cut(s) 153, 930, 1611, 1623
FspBI CTAG 7 cut(s) 218, 369, 528, 674, 915, 1137, 1458
GlaI GCGC 2 cut(s) 142, 1651
GluI GCNGC 4 cut(s) 153, 930, 1611, 1623
GsaI CCCAGC 1 cut(s) 936
GsuI CTGGAG 3 cut(s) 834, 990, 1742
HaeII RGCGCY 2 cut(s) 144, 1653
HaeIII GGCC 3 cut(s) 137, 1456, 1912
HapII CCGG 6 cut(s) 123, 130, 890, 1584, 1626, 1647
HgaI GACGC 1 cut(s) 115
HhaI GCGC 2 cut(s) 143, 1652
Hin1I GRCGYC 1 cut(s) 126
Hin6I GCGC 2 cut(s) 141, 1650
HinP1I GCGC 2 cut(s) 141, 1650
HindIII AAGCTT 1 cut(s) 1632
HpaII CCGG 6 cut(s) 123, 130, 890, 1584, 1626, 1647
HphI GGTGA 4 cut(s) 864, 1430, 1811, 2035
Hpy166II GTNNAC 3 cut(s) 1285, 1494, 1738
Hpy188I TCNGA 8 cut(s) 42, 87, 304, 398, 579, 621, 1224, 2073
Hpy188III TCNNGA 8 cut(s) 183, 386, 674, 1027, 1507, 1685, 1721, 1812
Hpy8I GTNNAC 3 cut(s) 1285, 1494, 1738
HpyAV CCTTC 6 cut(s) 83, 247, 383, 1033, 1755, 2079
HpyCH4IV ACGT 2 cut(s) 328, 1237
HpyCH4V TGCA 9 cut(s) 105, 428, 612, 1285, 1622, 1693, 1757, 1879, 1929
HpyF10VI GCNNNNNNNGC 7 cut(s) 66, 149, 828, 902, 1619, 1631, 1658
HpyF3I CTNAG 8 cut(s) 495, 551, 578, 618, 827, 975, 2064, 2109
HpySE526I ACGT 2 cut(s) 328, 1237
Hsp92I GRCGYC 1 cut(s) 126
HspAI GCGC 2 cut(s) 141, 1650
Kzo9I GATC 9 cut(s) 220, 334, 354, 398, 1046, 1244, 1590, 1687, 2039
LguI GCTCTTC 1 cut(s) 1834
LmnI GCTCC 2 cut(s) 1302, 1723
Lsp1109I GCAGC 3 cut(s) 916, 1597, 1634
LweI GCATC 4 cut(s) 286, 415, 599, 652
MabI ACCWGGT 1 cut(s) 189
MaeI CTAG 7 cut(s) 218, 369, 528, 674, 915, 1137, 1458
MaeII ACGT 2 cut(s) 328, 1237
MaeIII GTNAC 6 cut(s) 340, 667, 1183, 1546, 1654, 1711
MalI GATC 9 cut(s) 222, 336, 356, 400, 1048, 1246, 1592, 1689, 2041
MbiI CCGCTC 1 cut(s) 588
MboI GATC 9 cut(s) 220, 334, 354, 398, 1046, 1244, 1590, 1687, 2039
MfeI CAATTG 1 cut(s) 1365
MflI RGATCY 4 cut(s) 220, 354, 398, 1244
MhlI GDGCHC 3 cut(s) 1132, 1287, 1728
MluCI AATT 7 cut(s) 79, 89, 1018, 1121, 1270, 1365, 1672
MlyI GAGTC 4 cut(s) 188, 729, 1168, 2027
MmeI TCCRAC 2 cut(s) 819, 1024
Mph1103I ATGCAT 1 cut(s) 1931
MroXI GAANNNNTTC 2 cut(s) 683, 1633
MseI TTAA 9 cut(s) 108, 741, 1212, 1706, 1767, 1941, 1998, 2076, 2128
MslI CAYNNNNRTG 2 cut(s) 564, 1449
MspA1I CMGCKG 2 cut(s) 167, 1319
MspI CCGG 6 cut(s) 123, 130, 890, 1584, 1626, 1647
MspR9I CCNGG 7 cut(s) 191, 775, 852, 1105, 1585, 1797, 1824
MssI GTTTAAAC 1 cut(s) 1768
MunI CAATTG 1 cut(s) 1365
Mva1269I GAATGC 1 cut(s) 1931
MvaI CCWGG 6 cut(s) 191, 775, 852, 1105, 1797, 1824
MwoI GCNNNNNNNGC 7 cut(s) 66, 149, 828, 902, 1619, 1631, 1658
NciI CCSGG 1 cut(s) 1585
NcoI CCATGG 2 cut(s) 759, 906
NdeI CATATG 1 cut(s) 1334
NdeII GATC 9 cut(s) 220, 334, 354, 398, 1046, 1244, 1590, 1687, 2039
NlaIV GGNNCC 4 cut(s) 757, 772, 997, 1252
NmuCI GTSAC 2 cut(s) 340, 667
NsiI ATGCAT 1 cut(s) 1931
NspI RCATGY 3 cut(s) 207, 248, 432
PaeI GCATGC 1 cut(s) 207
PagI TCATGA 1 cut(s) 1684
PciI ACATGT 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 1834
PctI GAATGC 1 cut(s) 1931
PdmI GAANNNNTTC 2 cut(s) 683, 1633
PfeI GAWTC 6 cut(s) 372, 393, 437, 582, 911, 2089
PflMI CCANNNNNTGG 3 cut(s) 730, 881, 1784
PkrI GCNGC 4 cut(s) 154, 931, 1612, 1624
PleI GAGTC 4 cut(s) 187, 728, 1168, 2026
PmeI GTTTAAAC 1 cut(s) 1768
PpsI GAGTC 4 cut(s) 187, 728, 1168, 2026
Ppu21I YACGTR 1 cut(s) 1238
PpuMI RGGWCCY 1 cut(s) 383
PscI ACATGT 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 6 cut(s) 189, 773, 850, 1103, 1795, 1822
PspFI CCCAGC 1 cut(s) 932
PspGI CCWGG 6 cut(s) 189, 773, 850, 1103, 1795, 1822
PspN4I GGNNCC 4 cut(s) 757, 772, 997, 1252
PspPI GGNCC 5 cut(s) 227, 383, 755, 770, 1454
PspPPI RGGWCCY 1 cut(s) 383
PstI CTGCAG 2 cut(s) 1624, 1881
PstNI CAGNNNCTG 1 cut(s) 364
PsuI RGATCY 4 cut(s) 220, 354, 398, 1244
PvuII CAGCTG 1 cut(s) 1319
RsaI GTAC 5 cut(s) 980, 1240, 1482, 1761, 1836
RsaNI GTAC 5 cut(s) 979, 1239, 1481, 1760, 1835
RseI CAYNNNNRTG 2 cut(s) 564, 1449
SapI GCTCTTC 1 cut(s) 1834
SaqAI TTAA 9 cut(s) 108, 741, 1212, 1706, 1767, 1941, 1998, 2076, 2128
SatI GCNGC 4 cut(s) 153, 930, 1611, 1623
Sau3AI GATC 9 cut(s) 220, 334, 354, 398, 1046, 1244, 1590, 1687, 2039
Sau96I GGNCC 5 cut(s) 227, 383, 755, 770, 1454
ScaI AGTACT 1 cut(s) 980
SchI GAGTC 4 cut(s) 188, 729, 1168, 2027
ScrFI CCNGG 7 cut(s) 191, 775, 852, 1105, 1585, 1797, 1824
SduI GDGCHC 3 cut(s) 1132, 1287, 1728
SexAI ACCWGGT 1 cut(s) 189
SfaNI GCATC 4 cut(s) 286, 415, 599, 652
SfcI CTRYAG 2 cut(s) 1620, 1877
SinI GGWCC 4 cut(s) 227, 383, 755, 770
SmiMI CAYNNNNRTG 2 cut(s) 564, 1449
SmlI CTYRAG 2 cut(s) 378, 2033
SmoI CTYRAG 2 cut(s) 378, 2033
SpeI ACTAGT 1 cut(s) 1136
SphI GCATGC 1 cut(s) 207
Sse9I AATT 7 cut(s) 79, 89, 1018, 1121, 1270, 1365, 1672
SsiI CCGC 8 cut(s) 114, 153, 165, 173, 586, 833, 1109, 2030
SspI AATATT 2 cut(s) 745, 1210
SspMI CTAG 7 cut(s) 218, 369, 528, 674, 915, 1137, 1458
StyD4I CCNGG 7 cut(s) 189, 773, 850, 1103, 1583, 1795, 1822
StyI CCWWGG 3 cut(s) 724, 759, 906
TaiI ACGT 2 cut(s) 331, 1240
TaqI TCGA 3 cut(s) 590, 1193, 1376
TasI AATT 7 cut(s) 79, 89, 1018, 1121, 1270, 1365, 1672
TatI WGTACW 3 cut(s) 978, 1759, 1834
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 6 cut(s) 372, 393, 437, 582, 911, 2089
Tru1I TTAA 9 cut(s) 108, 741, 1212, 1706, 1767, 1941, 1998, 2076, 2128
Tru9I TTAA 9 cut(s) 108, 741, 1212, 1706, 1767, 1941, 1998, 2076, 2128
TscAI CASTG 5 cut(s) 316, 694, 1014, 1824, 1886
TseFI GTSAC 2 cut(s) 340, 667
TseI GCWGC 3 cut(s) 929, 1610, 1622
Tsp45I GTSAC 2 cut(s) 340, 667
TspDTI ATGAA 5 cut(s) 17, 82, 560, 1362, 1658
TspGWI ACGGA 2 cut(s) 136, 1464
TspRI CASTG 5 cut(s) 316, 694, 1014, 1824, 1886
Van91I CCANNNNNTGG 3 cut(s) 730, 881, 1784
VneI GTGCAC 1 cut(s) 1283
VpaK11BI GGWCC 4 cut(s) 227, 383, 755, 770
XapI RAATTY 3 cut(s) 89, 1018, 1270
XbaI TCTAGA 1 cut(s) 673
XceI RCATGY 3 cut(s) 207, 248, 432
XcmI CCANNNNNNNNNTGG 1 cut(s) 731
XmnI GAANNNNTTC 2 cut(s) 683, 1633
XspI CTAG 7 cut(s) 218, 369, 528, 674, 915, 1137, 1458
ZrmI AGTACT 1 cut(s) 980
Zsp2I ATGCAT 1 cut(s) 1931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.