MD01G1018400.v1.1

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0007241
Physical Location & Seq
Forward (+)
7919167 .. 7919819
653 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1018400.v1.1.491

Sequence Viewer

Length: 501 bp
ATGCGTTTGTTTTACATATTGTTTTTGTGCATGTTTGATCGTTTTGTTTTTCAGTTTCGGGAAACAGTGCTTTTTAGATTTTGGGATTTTTTATTCAGATTCTTGGAACCATCTGTGCTAAAGCCTGAAAGAGAGGAAGGCATTTCTGGGATTATACTTGGGAAACAAGACGATATTGACAGAGTTGATAGTTCCGACTGTGATGACAATGATGTTGGGGATAAGGAGTTGGCAAAGCCCCTTGAACAATCACACGTGTACCTCTCTAATGCTGAGGTTCAGATCAATTCCGGAAGGATTCCAATCTGGCAAAAGTCTAAGATATATTTCTATACAATGAGTCCGTCTGCTGCTGGTGAGCTAAATTTTGGTAAAGATCTTACCGGTGGAGAGATGGAAATAGAGACGGTTCCTGTTCACAAGGTTGAAATGAGGCGGAATGATTTGCTACCTATTGTTCATCCTTTTCGTAGGTTTCTGTCTCATTGGAATGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

167

Amino Acids

19.54

Weight (kDa)

5.4

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3 PF12490 64 - 152 9.9e-28 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 486
AccIII TCCGGA 1 cut(s) 290
AciI CCGC 1 cut(s) 436
AcsI RAATTY 1 cut(s) 364
AcvI CACGTG 1 cut(s) 256
AfaI GTAC 1 cut(s) 260
AflIII ACRYGT 2 cut(s) 253, 255
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 2 cut(s) 245, 428
AluBI AGCT 1 cut(s) 361
AluI AGCT 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 398, 486
Aor13HI TCCGGA 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 364
AsiGI ACCGGT 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 368
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BbrPI CACGTG 1 cut(s) 256
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 118, 388
BcoDI GTCTC 2 cut(s) 398, 486
BfuAI ACCTGC 1 cut(s) 486
BglII AGATCT 1 cut(s) 376
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 108, 411
Bpu10I CCTNAGC 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 302
BsaWI WCCGGW 2 cut(s) 290, 383
Bse118I RCCGGY 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 290
BseGI GGATG 1 cut(s) 460
BseJI GATNNNNATC 1 cut(s) 302
BseMII CTCAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 337
BshTI ACCGGT 1 cut(s) 383
BsiSI CCGG 2 cut(s) 291, 384
BsmAI GTCTC 2 cut(s) 398, 486
BsmBI CGTCTC 1 cut(s) 398
Bsp13I TCCGGA 1 cut(s) 290
Bsp143I GATC 3 cut(s) 37, 282, 376
BspACI CCGC 1 cut(s) 436
BspCNI CTCAG 1 cut(s) 265
BspEI TCCGGA 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 108, 411
BspMI ACCTGC 1 cut(s) 486
BsrFI RCCGGY 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 383
BssMI GATC 3 cut(s) 37, 282, 376
Bst4CI ACNGT 3 cut(s) 67, 200, 409
BstBAI YACGTR 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 273, 318
BstF5I GGATG 1 cut(s) 460
BstKTI GATC 3 cut(s) 40, 285, 379
BstMAI GTCTC 2 cut(s) 398, 486
BstMBI GATC 3 cut(s) 37, 282, 376
BstNSI RCATGY 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BtsCI GGATG 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 486
Cfr10I RCCGGY 1 cut(s) 383
Csp6I GTAC 1 cut(s) 259
CspAI ACCGGT 1 cut(s) 383
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 124, 238, 361
CviKI_1 RGCY 3 cut(s) 124, 238, 361
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 273, 318
DpnI GATC 3 cut(s) 39, 284, 378
DpnII GATC 3 cut(s) 37, 282, 376
EciI GGCGGA 1 cut(s) 451
Eco72I CACGTG 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 1 cut(s) 34
FaiI YATR 5 cut(s) 17, 32, 155, 325, 333
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 351
HapII CCGG 2 cut(s) 291, 384
Hin1II CATG 1 cut(s) 34
HinfI GANTC 3 cut(s) 99, 298, 340
HpaII CCGG 2 cut(s) 291, 384
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 2 cut(s) 259, 418
Hpy188I TCNGA 3 cut(s) 98, 196, 282
Hpy188III TCNNGA 2 cut(s) 59, 291
Hpy8I GTNNAC 2 cut(s) 259, 418
HpyAV CCTTC 2 cut(s) 131, 288
HpyCH4III ACNGT 3 cut(s) 67, 200, 409
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 30
HpyF3I CTNAG 2 cut(s) 273, 318
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 34
Kpn2I TCCGGA 1 cut(s) 290
Kzo9I GATC 3 cut(s) 37, 282, 376
LpnPI CCDG 8 cut(s) 132, 138, 292, 304, 339, 397, 426, 481
Lsp1109I GCAGC 1 cut(s) 337
MaeII ACGT 1 cut(s) 255
MalI GATC 3 cut(s) 39, 284, 378
MboI GATC 3 cut(s) 37, 282, 376
MflI RGATCY 1 cut(s) 376
MluCI AATT 2 cut(s) 286, 364
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 4 cut(s) 127, 268, 272, 426
MroI TCCGGA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 489
MspI CCGG 2 cut(s) 291, 384
NdeII GATC 3 cut(s) 37, 282, 376
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 108, 411
NspI RCATGY 1 cut(s) 34
PfeI GAWTC 2 cut(s) 99, 298
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 348
PmaCI CACGTG 1 cut(s) 256
PmlI CACGTG 1 cut(s) 256
PpsI GAGTC 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 256
PspCI CACGTG 1 cut(s) 256
PspN4I GGNNCC 2 cut(s) 108, 411
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 489
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 3 cut(s) 37, 282, 376
SchI GAGTC 1 cut(s) 349
SetI ASST 8 cut(s) 258, 264, 279, 363, 426, 454, 476, 500
SmiMI CAYNNNNRTG 1 cut(s) 489
Sse9I AATT 2 cut(s) 286, 364
SsiI CCGC 1 cut(s) 436
TaaI ACNGT 3 cut(s) 67, 200, 409
TaiI ACGT 1 cut(s) 258
TasI AATT 2 cut(s) 286, 364
TfiI GAWTC 2 cut(s) 99, 298
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 449
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 72
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.