MD03G1089400.v1.1

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0007241
Physical Location & Seq
Reverse (-)
7352341 .. 7353900
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1089400.v1.1.491

Sequence Viewer

Length: 525 bp
ATGTTTGATGGTTTGTTTTTCAGATCGTTTTTGTGCATGTTTGATGCGTTTTGTTTTTCAGTTTCGGGATTCATTTCTTGGATGTTTGCCGAAGAAACGATTGGCCTGAAAGAGAGGAAGGCATTTCTGGGATTATACTTGGGAAACAAGACGATATTGACAGGGTTGATAGTTCTGACTCTGCTGACAATGATGTTGGGGATAAGGAGTTGGCAAAACCCCTTGAACCATCTCACGTGTACCTCTCTAATGCTGAGGTTCAGATCAATTCCGGAAGGATTCCAATCTGGCAAAAGTCTAAGTGAGCTAAATTTTGGTAAAGATGTAACCGGCAAAGAGATGGAAATAGAGACGGTTCCTGTTCACGAGGTTGAAATGAGGCAGAAAGATTTGCTACCTGTTGTTCATCCGTTTCATAGGTTTCAGTCTGACTGGAATGGCAGGTTTCTTATTGGAGCAGGATGCTTGAGTTCATCTTCTGATTCTCACGAAGATAAAGAAAAGTTTCAGGAAAAATCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

175

Amino Acids

19.95

Weight (kDa)

6.2

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3 PF12490 106 - 134 1.2e-07 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AccIII TCCGGA 1 cut(s) 271
AcsI RAATTY 1 cut(s) 310
AcvI CACGTG 1 cut(s) 237
AfaI GTAC 1 cut(s) 241
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 2 cut(s) 226, 374
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 344
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 310
Asp700I GAANNNNTTC 1 cut(s) 504
BauI CACGAG 1 cut(s) 365
BbrPI CACGTG 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 254
BccI CCATC 3 cut(s) 2, 237, 334
BcoDI GTCTC 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 357
BmsI GCATC 2 cut(s) 34, 452
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 487
BsaAI YACGTR 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 271
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 437
Bse8I GATNNNNATC 1 cut(s) 283
BseAI TCCGGA 1 cut(s) 271
BseGI GGATG 3 cut(s) 87, 406, 467
BseJI GATNNNNATC 1 cut(s) 283
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 437
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 272, 330
BsmAI GTCTC 1 cut(s) 344
BsmBI CGTCTC 1 cut(s) 344
BsnI GGCC 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 2 cut(s) 23, 263
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 246
BspEI TCCGGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 329
BssMI GATC 2 cut(s) 23, 263
BssSI CACGAG 1 cut(s) 365
Bst2BI CACGAG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 254, 299
BstF5I GGATG 3 cut(s) 87, 406, 467
BstKTI GATC 2 cut(s) 26, 266
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 2 cut(s) 23, 263
BstNSI RCATGY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 3 cut(s) 87, 406, 467
BveI ACCTGC 1 cut(s) 432
Cfr10I RCCGGY 1 cut(s) 329
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 37
CviJI RGCY 2 cut(s) 105, 307
CviKI_1 RGCY 2 cut(s) 105, 307
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 254, 299
DpnI GATC 2 cut(s) 25, 265
DpnII GATC 2 cut(s) 23, 263
Eco72I CACGTG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 1 cut(s) 40
FaiI YATR 3 cut(s) 38, 136, 417
FatI CATG 1 cut(s) 36
FokI GGATG 3 cut(s) 94, 393, 474
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 272, 330
Hin1II CATG 1 cut(s) 40
HinfI GANTC 4 cut(s) 69, 178, 279, 482
HpaII CCGG 2 cut(s) 272, 330
Hpy166II GTNNAC 2 cut(s) 240, 364
Hpy188I TCNGA 5 cut(s) 23, 177, 263, 430, 481
Hpy188III TCNNGA 5 cut(s) 66, 272, 365, 488, 509
Hpy8I GTNNAC 2 cut(s) 240, 364
HpyAV CCTTC 2 cut(s) 112, 269
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 254, 299
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 1 cut(s) 40
Kpn2I TCCGGA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 23, 263
LmnI GCTCC 1 cut(s) 455
LweI GCATC 2 cut(s) 34, 452
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 25, 265
MboI GATC 2 cut(s) 23, 263
MboII GAAGA 3 cut(s) 104, 468, 503
MluCI AATT 2 cut(s) 267, 310
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 5 cut(s) 108, 249, 253, 361, 372
MroI TCCGGA 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 504
MspI CCGG 2 cut(s) 272, 330
NdeII GATC 2 cut(s) 23, 263
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 357
NspI RCATGY 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 3 cut(s) 69, 279, 482
PleI GAGTC 1 cut(s) 172
PmaCI CACGTG 1 cut(s) 237
PmlI CACGTG 1 cut(s) 237
PpsI GAGTC 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 237
PspCI CACGTG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 357
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
Sau3AI GATC 2 cut(s) 23, 263
SchI GAGTC 1 cut(s) 172
SetI ASST 8 cut(s) 239, 245, 260, 309, 372, 400, 422, 446
SfaNI GCATC 2 cut(s) 34, 452
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
Sse9I AATT 2 cut(s) 267, 310
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 239
TasI AATT 2 cut(s) 267, 310
TfiI GAWTC 3 cut(s) 69, 279, 482
TspDTI ATGAA 4 cut(s) 61, 395, 404, 462
TspGWI ACGGA 1 cut(s) 399
XapI RAATTY 1 cut(s) 310
XceI RCATGY 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.