pycom04g18790

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0007241
Physical Location & Seq
Forward (+)
20686262 .. 20688644
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18790.1

Sequence Viewer

Length: 1008 bp
ATGAAGAAGAACCAAAACGGCGGCACCAAGGTCGTTCAGAGTAATCATCACCATCACGCCAATAACAATGGCTTCCTTCCGAATTCTCTCAAATTCATTTCTTCTTGCATTAAAACTGCATCTTCCGGCGTAAGGTCGGGCGCCGCCTCCGTCGCCGCCTCCATCACCGCCGACCCTCACGATTGCCGAGACCAGGTGTTGTGGGCTTGCTTTGACAAACTAGAGCTTGGTCCATCTTCCTTCAAACATGTTCTGCTACTCGGTTATTCCAATGGCTTTCAAGTCCTTGATATTGAAGATGCCTCTAATTTCAGTGAACTTGTATCAAGGCGTGATGATCGATTTAAATTTTTACAGATGCAGCCCCTGCCTGCAAAGTGTGAGGGTCAAGAAGGATTCAGATCCTCACATCCTATTCTCATGGTTGTTGCATGTGATGAAAAGAGCTCAGGTATGATGCAAACAGGGAGAGATGGGTTGGTCAATGGTCATTCTGAGCCTCAAACAGGAAACTCTGCTTTGTCTCCAACCGCTGTTCGGTTTTATTCGCTGAGGTCTTGCAGTTATGTTCATGTTCTAAGATTCCGTTCAACTGTGTATATGGTTAGATGCAGTCCTCAAGTAGTAGCTGTGGGTCTTGCATCACAAATATACTGCTTTGATGCTGTCACTCTTGAGAACAAATTCAGTGTCCTCACTTATCCTGTCCCCCAATTGGGAGTTCAAGGACTGGTTGGGGTCAATATTGGGTATGGTCCAATGGCTGTTGGTCCCAGGTGGTTGGCTTATGCTTCCAACAACCCTCTGATGTCAAACACAGGCCGCCTCAGTCCTCAAAGTCTTACTCCTCCTGGTGTAAGTCCATCAACTTCGCCAAGTAGTGGGAATCTGATGGCTCGATATGCAATGGAATCTAGTAAACAGTTAGCTTCTGGGTTACTTAATCTTGGAGACATGGGTTACAAAACTTTGTCCAAGTACTATCGATCTTGTACCGGATGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

336

Amino Acids

36.33

Weight (kDa)

9.11

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 84 - 269 6.5e-12 BCAS3, WD40 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 23, 140
AccB7I CCANNNNNTGG 1 cut(s) 881
AciI CCGC 6 cut(s) 21, 144, 156, 168, 531, 823
AclWI GGATC 1 cut(s) 396
AcsI RAATTY 4 cut(s) 82, 92, 347, 683
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 2 cut(s) 980, 994
AfiI CCNNNNNNNGG 7 cut(s) 132, 193, 506, 537, 715, 716, 881
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 5 cut(s) 244, 281, 296, 591, 725
AjnI CCWGG 3 cut(s) 192, 773, 850
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
AluBI AGCT 4 cut(s) 226, 447, 629, 929
AluI AGCT 4 cut(s) 226, 447, 629, 929
Alw21I GWGCWC 1 cut(s) 449
Alw26I GTCTC 3 cut(s) 183, 528, 945
AlwI GGATC 1 cut(s) 396
AlwNI CAGNNNCTG 1 cut(s) 367
AoxI GGCC 1 cut(s) 820
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 4 cut(s) 82, 92, 347, 683
ArsI GACNNNNNNTTYG 2 cut(s) 675, 707
Asp700I GAANNNNTTC 1 cut(s) 683
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 3 cut(s) 230, 755, 770
AsuHPI GGTGA 2 cut(s) 41, 157
AvaII GGWCC 3 cut(s) 230, 755, 770
BanI GGYRCC 2 cut(s) 23, 140
BanII GRGCYC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 449
BbvCI CCTCAGC 1 cut(s) 551
BbvI GCAGC 1 cut(s) 373
BccI CCATC 7 cut(s) 60, 170, 241, 467, 871, 886, 993
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 3 cut(s) 194, 775, 852
BcoDI GTCTC 3 cut(s) 183, 528, 945
BfaI CTAG 2 cut(s) 221, 915
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 5 cut(s) 22, 144, 156, 362, 823
BlsI GCNGC 5 cut(s) 23, 145, 157, 363, 824
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 3 cut(s) 194, 775, 852
Bme18I GGWCC 3 cut(s) 230, 755, 770
BmgT120I GGNCC 3 cut(s) 230, 755, 770
BmiI GGNNCC 3 cut(s) 25, 142, 772
BmrFI CCNGG 3 cut(s) 194, 775, 852
BmsI GCATC 7 cut(s) 128, 289, 348, 447, 599, 650, 652
Bpu10I CCTNAGC 2 cut(s) 448, 551
BpuEI CTTGAG 2 cut(s) 603, 695
Bsa29I ATCGAT 2 cut(s) 340, 985
BsaBI GATNNNNATC 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 27, 773
BsaWI WCCGGW 1 cut(s) 995
Bsc4I CCNNNNNNNGG 7 cut(s) 132, 193, 506, 537, 715, 716, 881
Bse1I ACTGG 1 cut(s) 735
Bse3DI GCAATG 1 cut(s) 912
Bse8I GATNNNNATC 1 cut(s) 400
BseBI CCWGG 3 cut(s) 194, 775, 852
BseCI ATCGAT 2 cut(s) 340, 985
BseDI CCNNGG 2 cut(s) 27, 773
BseGI GGATG 2 cut(s) 409, 1004
BseJI GATNNNNATC 1 cut(s) 400
BseLI CCNNNNNNNGG 7 cut(s) 132, 193, 506, 537, 715, 716, 881
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 4 cut(s) 462, 486, 542, 841
BseNI ACTGG 1 cut(s) 735
BseRI GAGGAG 1 cut(s) 837
BseXI GCAGC 1 cut(s) 373
BshFI GGCC 1 cut(s) 822
BshNI GGYRCC 2 cut(s) 23, 140
BshVI ATCGAT 2 cut(s) 340, 985
BsiHKAI GWGCWC 1 cut(s) 449
BsiSI CCGG 2 cut(s) 126, 996
BslFI GGGAC 2 cut(s) 692, 756
BslI CCNNNNNNNGG 7 cut(s) 132, 193, 506, 537, 715, 716, 881
BsmAI GTCTC 3 cut(s) 183, 528, 945
BsmFI GGGAC 2 cut(s) 692, 756
BsnI GGCC 1 cut(s) 822
Bso31I GGTCTC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 3 cut(s) 337, 401, 986
BspACI CCGC 6 cut(s) 21, 144, 156, 168, 531, 823
BspANI GGCC 1 cut(s) 822
BspCNI CTCAG 4 cut(s) 461, 487, 543, 840
BspDI ATCGAT 2 cut(s) 340, 985
BspLI GGNNCC 3 cut(s) 25, 142, 772
BspPI GGATC 1 cut(s) 396
BspT107I GGYRCC 2 cut(s) 23, 140
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 912
BsrI ACTGG 1 cut(s) 735
BssECI CCNNGG 2 cut(s) 27, 773
BssMI GATC 3 cut(s) 337, 401, 986
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 3 cut(s) 194, 775, 852
Bst4CI ACNGT 2 cut(s) 595, 924
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 208, 372
BstDEI CTNAG 5 cut(s) 448, 495, 551, 578, 827
BstENI CCTNNNNNAGG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 409, 1004
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 3 cut(s) 340, 404, 989
BstMAI GTCTC 3 cut(s) 183, 528, 945
BstMBI GATC 3 cut(s) 337, 401, 986
BstMWI GCNNNNNNNGC 3 cut(s) 152, 367, 902
BstNI CCWGG 3 cut(s) 194, 775, 852
BstNSI RCATGY 2 cut(s) 251, 435
BstSCI CCNGG 3 cut(s) 192, 773, 850
BstV1I GCAGC 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 401
BstXI CCANNNNNNTGG 1 cut(s) 781
BstYI RGATCY 1 cut(s) 401
Bsu15I ATCGAT 2 cut(s) 340, 985
BsuRI GGCC 1 cut(s) 822
BsuTUI ATCGAT 2 cut(s) 340, 985
BtsCI GGATG 2 cut(s) 409, 1004
BtsIMutI CAGTG 2 cut(s) 319, 694
Cac8I GCNNGC 2 cut(s) 208, 372
CaiI CAGNNNCTG 1 cut(s) 367
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 3 cut(s) 230, 755, 770
ClaI ATCGAT 2 cut(s) 340, 985
CsiI ACCWGGT 1 cut(s) 192
Csp6I GTAC 2 cut(s) 979, 993
CviAII CATG 5 cut(s) 248, 421, 432, 572, 955
CviQI GTAC 2 cut(s) 979, 993
DdeI CTNAG 5 cut(s) 448, 495, 551, 578, 827
DinI GGCGCC 1 cut(s) 142
DpnI GATC 3 cut(s) 339, 403, 988
DpnII GATC 3 cut(s) 337, 401, 986
DraI TTTAAA 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 449
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 3 cut(s) 230, 755, 770
Eco53kI GAGCTC 1 cut(s) 447
EcoICRI GAGCTC 1 cut(s) 447
EcoNI CCTNNNNNAGG 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 3 cut(s) 192, 773, 850
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 449
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 5 cut(s) 251, 424, 435, 575, 958
FaqI GGGAC 2 cut(s) 692, 756
FatI CATG 5 cut(s) 247, 420, 431, 571, 954
Fnu4HI GCNGC 5 cut(s) 22, 144, 156, 362, 823
FokI GGATG 1 cut(s) 396
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 5 cut(s) 22, 144, 156, 362, 823
FspBI CTAG 2 cut(s) 221, 915
GlaI GCGC 1 cut(s) 142
GluI GCNGC 5 cut(s) 22, 144, 156, 362, 823
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 822
HapII CCGG 2 cut(s) 126, 996
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 5 cut(s) 251, 424, 435, 575, 958
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 4 cut(s) 396, 582, 886, 911
HpaII CCGG 2 cut(s) 126, 996
HphI GGTGA 2 cut(s) 41, 157
Hpy166II GTNNAC 2 cut(s) 317, 920
Hpy188I TCNGA 6 cut(s) 39, 81, 401, 496, 807, 891
Hpy188III TCNNGA 3 cut(s) 179, 389, 674
Hpy8I GTNNAC 2 cut(s) 317, 920
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 86, 250, 386
HpyCH4III ACNGT 2 cut(s) 595, 924
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 367, 902
HpyF3I CTNAG 5 cut(s) 448, 495, 551, 578, 827
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 5 cut(s) 251, 424, 435, 575, 958
HspAI GCGC 1 cut(s) 141
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 3 cut(s) 337, 401, 986
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 7 cut(s) 128, 289, 348, 447, 599, 650, 652
MabI ACCWGGT 1 cut(s) 192
MaeI CTAG 2 cut(s) 221, 915
MaeIII GTNAC 3 cut(s) 667, 936, 959
MalI GATC 3 cut(s) 339, 403, 988
MboI GATC 3 cut(s) 337, 401, 986
MboII GAAGA 6 cut(s) 16, 19, 93, 114, 228, 308
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 6 cut(s) 82, 92, 307, 347, 683, 713
Mly113I GGCGCC 1 cut(s) 141
MmeI TCCRAC 2 cut(s) 551, 819
MroXI GAANNNNTTC 1 cut(s) 683
MseI TTAA 3 cut(s) 111, 345, 942
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 2 cut(s) 126, 996
MspR9I CCNGG 3 cut(s) 194, 775, 852
MunI CAATTG 1 cut(s) 713
MvaI CCWGG 3 cut(s) 194, 775, 852
MwoI GCNNNNNNNGC 3 cut(s) 152, 367, 902
NarI GGCGCC 1 cut(s) 141
NdeII GATC 3 cut(s) 337, 401, 986
NlaIII CATG 5 cut(s) 251, 424, 435, 575, 958
NlaIV GGNNCC 3 cut(s) 25, 142, 772
NmeAIII GCCGAG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 667
NspI RCATGY 2 cut(s) 251, 435
PciI ACATGT 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 683
PfeI GAWTC 4 cut(s) 396, 582, 886, 911
PflMI CCANNNNNTGG 1 cut(s) 881
PkrI GCNGC 5 cut(s) 23, 145, 157, 363, 824
PluTI GGCGCC 1 cut(s) 144
PscI ACATGT 1 cut(s) 247
Psp124BI GAGCTC 1 cut(s) 449
Psp6I CCWGG 3 cut(s) 192, 773, 850
PspGI CCWGG 3 cut(s) 192, 773, 850
PspN4I GGNNCC 3 cut(s) 25, 142, 772
PspPI GGNCC 3 cut(s) 230, 755, 770
PstNI CAGNNNCTG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 401
RsaI GTAC 2 cut(s) 980, 994
RsaNI GTAC 2 cut(s) 979, 993
SacI GAGCTC 1 cut(s) 449
SaqAI TTAA 3 cut(s) 111, 345, 942
SatI GCNGC 5 cut(s) 22, 144, 156, 362, 823
Sau3AI GATC 3 cut(s) 337, 401, 986
Sau96I GGNCC 3 cut(s) 230, 755, 770
ScaI AGTACT 1 cut(s) 980
ScrFI CCNGG 3 cut(s) 194, 775, 852
SduI GDGCHC 1 cut(s) 449
SexAI ACCWGGT 1 cut(s) 192
SfaNI GCATC 7 cut(s) 128, 289, 348, 447, 599, 650, 652
SfoI GGCGCC 1 cut(s) 142
SinI GGWCC 3 cut(s) 230, 755, 770
SmiI ATTTAAAT 1 cut(s) 346
SmlI CTYRAG 2 cut(s) 618, 674
SmoI CTYRAG 2 cut(s) 618, 674
Sse9I AATT 6 cut(s) 82, 92, 307, 347, 683, 713
SsiI CCGC 6 cut(s) 21, 144, 156, 168, 531, 823
SspDI GGCGCC 1 cut(s) 140
SspI AATATT 1 cut(s) 745
SspMI CTAG 2 cut(s) 221, 915
SstI GAGCTC 1 cut(s) 449
StyD4I CCNGG 3 cut(s) 192, 773, 850
StyI CCWWGG 1 cut(s) 27
SwaI ATTTAAAT 1 cut(s) 346
TaaI ACNGT 2 cut(s) 595, 924
TaqI TCGA 3 cut(s) 340, 898, 985
TasI AATT 6 cut(s) 82, 92, 307, 347, 683, 713
TatI WGTACW 1 cut(s) 978
TauI GCSGC 4 cut(s) 24, 146, 158, 825
TfiI GAWTC 4 cut(s) 396, 582, 886, 911
Tru1I TTAA 3 cut(s) 111, 345, 942
Tru9I TTAA 3 cut(s) 111, 345, 942
TscAI CASTG 2 cut(s) 319, 694
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 4 cut(s) 17, 85, 453, 560
TspGWI ACGGA 2 cut(s) 139, 575
TspRI CASTG 2 cut(s) 319, 694
Van91I CCANNNNNTGG 1 cut(s) 881
VpaK11BI GGWCC 3 cut(s) 230, 755, 770
XagI CCTNNNNNAGG 1 cut(s) 504
XapI RAATTY 4 cut(s) 82, 92, 347, 683
XceI RCATGY 2 cut(s) 251, 435
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 2 cut(s) 221, 915
ZrmI AGTACT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.