RLG00000025509

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007241
Physical Location & Seq
Forward (+)
46315282 .. 46321479
6198 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025509

Sequence Viewer

Length: 2946 bp
ATGAAGAAGAACCTTTACAACGGCAACAACACGAAAGTTCAGACTAATCACCATCGTCATCATCACAGCAATAATGGCTTCCTTCCTAATTCTCTGAAATTCATTTCCTCTTGCATTAAGACCGCCTCCTCCGGCGTCCGGTCGGCCAGCGCCTCCGTCGCCGCTTCCATCTCCGCTGACCCGCACGAGTCCCGAGACCAGGTGTTGTGGGCATGCTTTGACAGACTAGATCTTGGTCCATCTTCCTTCAAACATGTTCTGCTACTCGGTTATGTCAATGGCTTTCAAGTCCTTGATGTTGAAGATGCCTCTGATGTCAGGGAGCTTGTATCAAAACGTGATGATCCAGTCACATTTTTACAGATCCAGCCCCTGCCTAGAATCTCTCAAGGTCCTGAAGGATTCAGATCTTCGCATCCATTACTCATGGTTGTTGCATGTGAAGAATCAAAGAACTCTGGTATGACACAAAATGGAAGAGATGGTTTGGTAAATGGTTATACTGAGCCTCAAACAAGCAACTCTATGTCTCCTAGAGTTGTTCGGTTTTATTCACTAAGGTCTCACAGTTATGTTCATGTTCTGAGATTCCGCTCGACTGTGTATATGGTTAGATGCAGTCCTCAGATAGTGGCTGTTGGTCTTGCCTCTCAAATATACTGCTTTGATGCTGTCACTCTAGAGAACAAGTTCAGTGTTCTTACTTATCCTGTCCCCCAGTTGGGAGTCCAAGGACTGGTTGGGGTTAATATTGGATATGGTCCCATGGCTGTTGGTCCCAGGTGGTTGGCTTATGCCTCCAACAACCCTTTACTGTCAAACACTTGCCGACTAAGCCCGCAAAGTCTTACACCTCCAGGTGTCAGTCCATCAACTTCACCAAGTAATGGAAATCTGGTGGCTCGGTATGCCATGGAATCTAGTAAGCAGTTAGCTGCTGGGTTGCTAAATCTGGGAGACATGGGCTACAAAACTTTGTCTAAGTACTATCAACCAGATGGTTCCAGCTCTCCAGTGTCATCAAATTCTATCTGGAAAGTTGGGAAGGTTGGATCACATTCAACAGAAACAGATATTGCTGGAATGGTTGTTGTAAAAGACATTGTTTCCAGGGCGGTCGTTTCACAATTTAGGGCACATACTAGTCCCATTTCTGCCCTATGTTTTGACCCAAGTGGGACTCTCCTTGTTACTGCCTCGATACATGGAAACAATATTAACATTTTTCGGATAATGCCATCACGTATTGGATCTGGCACCCAGAACTATGACTTGAATTCCTCTCATGTGCACCTTTACAAGCTCCATCGTGGCATGACATCAGCTGTAATCCAAGACATATGTTTTAGTCAATACAGTCAATGGATTACAATTGTTTCATCGAGGGGGACTTGCCATATTTTTACTTTTTCCCCCTTTGGTGGTGATACCACTCACAAGCAGAGTTCTCATGTTGATGGGCCTAGTCATTTGCCAGTTCCGTCTGTACCATGGTGGTTCACTCCTTATTTCCTGACAAACCAGCAACTTTTTTCTCCACCACCACCCCCTGTTACCCTTTCTGTGGTTAGCAGAATAAAAGATAACTCCGGGTGGATCAATACAGTTAGTCATGCTGCGTCTTCTGCAGCCGGAAAAGCTTCCATTCCATCTGGCGCTGTTACTGCTGTATTTCATAATTCTGTTGCTCATGATCTGCAAACTTCTCATTTAAAGGTAACTGCTCTGGAGCACCTATTGGTTTACACTCCTTCTGGTCATGCAGTACAGTTTAAACTACTTCCAAGAGTTGGGATAGAGCCTGGTGAAGCTACATCAAGAGCAGTGCCAGGCTCTTCAGTACAAATACAGGATGAGGAGTTGCGAGTGAAAGTTGAACCTCTGCAGTGGTGGGACGTTTGCCGAAGAACTGATTGGCCTGAAAGAGAGGAATGCATTTCTGGGATTAAGCTTGGGAGACAAGAAGATGAGGAGACAGTCATGGATACTTTTGATTGTGATGTTAATGATATTGGGGATAAGGAGTCGGTGAAACCACTTGAGCGATCTCACTTGTATCTCGCCAACGCTGAGGTTCAGATTAACTGTGGAAGGATTCCAATCTGGCAAAAGTCTAAGATATATTTCTATACAATGAGTACCCTGGGAGCCATTGAACAAAATTTTACTAAAGATCTTACTGGAGGAGAGATTGAAATAGAAAAGGTTCCTGTTCACGAGGTCGAAATTAGGCGGAAGGATTTGCTACCTGTTTCTGATCAATTCCAAAGAGTGCAGTCTAATTGGAGTGACAGGGATCTTATTGGAAGAGGATTCTCAAGTTCATCTTCTGATTCTCATGAAGCTAAAGAAAAATTTCTGGAAAATGTTGATATTTCTGGTGACAAGTTGGCAGCAACTGGCAACCCAGATGCCGGTGGTTCTTATCCATCCATTCTCCAATCTGTGAATGGAAATAATGGGGAAACAAGAGGGAGATCTTTTTTGGCGTCACCTCTACTGAACCAAAGCTCCATAAAGAATAATATTGTTACAATACCTTCAAAACAACCGACTTCAGGTGTTTCTCTGGTTAAGGATAGTAATTTTTCAAAGAGTCCATCCACTTTAACAGGTGGTTCACTTGCTGCTGATAGAACTATTGCACAAGAGGTTCATTTGGTGAACAGTGGTGGGGCCAATGAAAGTTCAAATGTAAGTTCTAACCGTTCTGACCTGAGTATGAACATCCTTGATGAGGGACCAGTACATGACTCACTGGATTTTGAGCAGTTTTTCCAAGAGGGGTATTGTAAAGCATCACCTTTGAGCAACTTTCCTGAATCAACTGAAGTTGTAACTGATGTGGACAGTAGCAACAGCCCCTGTGATAGGGAGAAATGCGAGGAAGATGGCAACGATGATGACATGCTTGGCGGTGTATTTGACTTCTCCGAGGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

982

Amino Acids

107.0

Weight (kDa)

5.95

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 86 - 478 3.9e-36 BCAS3, WD40 repeat
BCAS3 PF12490 614 - 751 3.1e-47 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1256
AccB7I CCANNNNNTGG 3 cut(s) 736, 887, 1790
AccBSI CCGCTC 1 cut(s) 594
AciI CCGC 9 cut(s) 123, 162, 174, 182, 592, 839, 1115, 2233, 2916
AclWI GGATC 6 cut(s) 338, 358, 1060, 1258, 1604, 2304
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 5 cut(s) 98, 1024, 1276, 2161, 2354
AcuI CTGAAG 4 cut(s) 417, 1821, 2541, 2850
AcyI GRCGYC 2 cut(s) 135, 2489
AfaI GTAC 6 cut(s) 986, 1488, 1767, 1842, 2140, 2748
AflIII ACRYGT 1 cut(s) 253
AhlI ACTAGT 1 cut(s) 1142
AjnI CCWGG 7 cut(s) 198, 779, 856, 1109, 1801, 1828, 2142
AjuI GAANNNNNNNTTGG 2 cut(s) 1897, 1929
AloI GAACNNNNNNTCC 2 cut(s) 2495, 2527
Alw21I GWGCWC 2 cut(s) 1293, 1734
Alw26I GTCTC 6 cut(s) 189, 534, 567, 951, 1951, 1967
Alw44I GTGCAC 1 cut(s) 1289
AlwI GGATC 6 cut(s) 338, 358, 1060, 1258, 1604, 2304
AlwNI CAGNNNCTG 3 cut(s) 373, 2399, 2865
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 4 cut(s) 144, 1460, 1916, 2676
ApaLI GTGCAC 1 cut(s) 1289
ApeKI GCWGC 5 cut(s) 935, 1616, 1628, 2393, 2627
ApoI RAATTY 5 cut(s) 98, 1024, 1276, 2161, 2354
Asp700I GAANNNNTTC 4 cut(s) 689, 1639, 2205, 2355
AspLEI GCGC 2 cut(s) 152, 1658
AspS9I GGNCC 7 cut(s) 236, 392, 761, 776, 1460, 2676, 2741
AsuC2I CCSGG 1 cut(s) 1591
AsuHPI GGTGA 9 cut(s) 41, 870, 1436, 1817, 2041, 2393, 2484, 2674, 2793
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 5 cut(s) 236, 392, 761, 776, 2741
BaeGI GKGCMC 2 cut(s) 1138, 1293
BanI GGYRCC 1 cut(s) 1256
BarI GAAGNNNNNNTAC 1 cut(s) 31
BauI CACGAG 2 cut(s) 185, 2216
BbsI GAAGAC 1 cut(s) 1614
Bbv12I GWGCWC 2 cut(s) 1293, 1734
BbvCI CCTCAGC 1 cut(s) 2070
BbvI GCAGC 5 cut(s) 922, 1603, 1640, 2405, 2614
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 7 cut(s) 200, 781, 858, 1111, 1803, 1830, 2144
BciVI GTATCC 1 cut(s) 1978
BclI TGATCA 1 cut(s) 2257
BcnI CCSGG 1 cut(s) 1591
BcoDI GTCTC 6 cut(s) 189, 534, 567, 951, 1951, 1967
BcuI ACTAGT 1 cut(s) 1142
BfaI CTAG 7 cut(s) 227, 378, 534, 680, 921, 1143, 1464
BfmI CTRYAG 2 cut(s) 1626, 1883
BfoI RGCGCY 2 cut(s) 153, 1659
BfuI GTATCC 1 cut(s) 1978
BglII AGATCT 4 cut(s) 229, 407, 2173, 2477
BisI GCNGC 6 cut(s) 162, 936, 1617, 1629, 2394, 2628
BlsI GCNGC 6 cut(s) 163, 937, 1618, 1630, 2395, 2629
BmcAI AGTACT 1 cut(s) 986
Bme1390I CCNGG 8 cut(s) 200, 781, 858, 1111, 1591, 1803, 1830, 2144
Bme18I GGWCC 5 cut(s) 236, 392, 761, 776, 2741
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 7 cut(s) 236, 392, 761, 776, 1460, 2676, 2741
BmiI GGNNCC 8 cut(s) 763, 778, 1003, 1258, 2149, 2208, 2677, 2742
BmrFI CCNGG 8 cut(s) 200, 781, 858, 1111, 1591, 1803, 1830, 2144
BmrI ACTGGG 1 cut(s) 712
BmsI GCATC 6 cut(s) 295, 424, 605, 658, 2401, 2807
BmuI ACTGGG 1 cut(s) 712
BpiI GAAGAC 1 cut(s) 1614
BpmI CTGGAG 4 cut(s) 840, 996, 1748, 2202
Bpu10I CCTNAGC 1 cut(s) 2070
BpuEI CTTGAG 3 cut(s) 372, 2060, 2302
BpuMI CCSGG 1 cut(s) 1591
BsaAI YACGTR 1 cut(s) 1244
BsaBI GATNNNNATC 2 cut(s) 406, 2099
BsaHI GRCGYC 2 cut(s) 135, 2489
BsaI GGTCTC 2 cut(s) 189, 567
BsaJI CCNNGG 9 cut(s) 730, 765, 779, 912, 1110, 1490, 2142, 2143, 2934
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 2495, 2525
Bse118I RCCGGY 1 cut(s) 2414
Bse1I ACTGG 9 cut(s) 347, 718, 741, 1013, 1475, 2185, 2404, 2744, 2763
Bse8I GATNNNNATC 2 cut(s) 406, 2099
BseBI CCWGG 7 cut(s) 200, 781, 858, 1111, 1803, 1830, 2144
BseDI CCNNGG 9 cut(s) 730, 765, 779, 912, 1110, 1490, 2142, 2143, 2934
BseGI GGATG 5 cut(s) 415, 1858, 2429, 2600, 2727
BseJI GATNNNNATC 2 cut(s) 406, 2099
BseMII CTCAG 5 cut(s) 495, 575, 638, 2061, 2708
BseNI ACTGG 9 cut(s) 347, 718, 741, 1013, 1475, 2185, 2404, 2744, 2763
BseRI GAGGAG 4 cut(s) 118, 1871, 1985, 2199
BseSI GKGCMC 2 cut(s) 1138, 1293
BseXI GCAGC 5 cut(s) 922, 1603, 1640, 2405, 2614
BseYI CCCAGC 1 cut(s) 938
BsgI GTGCAG 1 cut(s) 2294
Bsh1285I CGRYCG 2 cut(s) 143, 1119
BshFI GGCC 4 cut(s) 146, 1462, 1918, 2678
BshNI GGYRCC 1 cut(s) 1256
BsiEI CGRYCG 2 cut(s) 143, 1119
BsiHKAI GWGCWC 2 cut(s) 1293, 1734
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 5 cut(s) 132, 139, 1590, 1632, 2415
BslFI GGGAC 9 cut(s) 175, 698, 747, 762, 1131, 1192, 1402, 1907, 2754
BsmAI GTCTC 6 cut(s) 189, 534, 567, 951, 1951, 1967
BsmFI GGGAC 9 cut(s) 175, 698, 747, 762, 1131, 1192, 1402, 1907, 2754
BsmI GAATGC 1 cut(s) 1937
BsnI GGCC 4 cut(s) 146, 1462, 1918, 2678
Bso31I GGTCTC 2 cut(s) 189, 567
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 1138, 1293, 1734
Bsp19I CCATGG 3 cut(s) 765, 912, 1490
BspACI CCGC 9 cut(s) 123, 162, 174, 182, 592, 839, 1115, 2233, 2916
BspANI GGCC 4 cut(s) 146, 1462, 1918, 2678
BspCNI CTCAG 5 cut(s) 496, 576, 637, 2062, 2709
BspHI TCATGA 2 cut(s) 1690, 2338
BspLI GGNNCC 8 cut(s) 763, 778, 1003, 1258, 2149, 2208, 2677, 2742
BspMAI CTGCAG 2 cut(s) 1630, 1887
BspPI GGATC 6 cut(s) 338, 358, 1060, 1258, 1604, 2304
BspQI GCTCTTC 1 cut(s) 1840
BspT107I GGYRCC 1 cut(s) 1256
BspTNI GGTCTC 2 cut(s) 189, 567
BsrBI CCGCTC 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 2414
BsrI ACTGG 9 cut(s) 347, 718, 741, 1013, 1475, 2185, 2404, 2744, 2763
BssAI RCCGGY 1 cut(s) 2414
BssECI CCNNGG 9 cut(s) 730, 765, 779, 912, 1110, 1490, 2142, 2143, 2934
BssNI GRCGYC 2 cut(s) 135, 2489
BssSI CACGAG 2 cut(s) 185, 2216
BssT1I CCWWGG 4 cut(s) 730, 765, 912, 1490
Bst2BI CACGAG 2 cut(s) 185, 2216
Bst2UI CCWGG 7 cut(s) 200, 781, 858, 1111, 1803, 1830, 2144
Bst6I CTCTTC 3 cut(s) 472, 1840, 2302
BstACI GRCGYC 2 cut(s) 135, 2489
BstBAI YACGTR 1 cut(s) 1244
BstC8I GCNNGC 3 cut(s) 148, 214, 839
BstDEI CTNAG 9 cut(s) 504, 557, 584, 624, 833, 981, 2070, 2115, 2717
BstDSI CCRYGG 3 cut(s) 765, 912, 1490
BstENI CCTNNNNNAGG 2 cut(s) 2735, 2869
BstF5I GGATG 5 cut(s) 415, 1858, 2429, 2600, 2727
BstH2I RGCGCY 2 cut(s) 153, 1659
BstHHI GCGC 2 cut(s) 152, 1658
BstMAI GTCTC 6 cut(s) 189, 534, 567, 951, 1951, 1967
BstMCI CGRYCG 2 cut(s) 143, 1119
BstMWI GCNNNNNNNGC 7 cut(s) 75, 158, 834, 908, 1625, 1637, 1664
BstNI CCWGG 7 cut(s) 200, 781, 858, 1111, 1803, 1830, 2144
BstNSI RCATGY 4 cut(s) 216, 257, 441, 2911
BstSCI CCNGG 8 cut(s) 198, 779, 856, 1109, 1589, 1801, 1828, 2142
BstSFI CTRYAG 2 cut(s) 1626, 1883
BstSLI GKGCMC 2 cut(s) 1138, 1293
BstV1I GCAGC 5 cut(s) 922, 1603, 1640, 2405, 2614
BstV2I GAAGAC 1 cut(s) 1614
BstX2I RGATCY 7 cut(s) 229, 363, 407, 1250, 2173, 2296, 2477
BstXI CCANNNNNNTGG 1 cut(s) 787
BstYI RGATCY 7 cut(s) 229, 363, 407, 1250, 2173, 2296, 2477
BsuI GTATCC 1 cut(s) 1978
BsuRI GGCC 4 cut(s) 146, 1462, 1918, 2678
BtgI CCRYGG 3 cut(s) 765, 912, 1490
BtsCI GGATG 5 cut(s) 415, 1858, 2429, 2600, 2727
BtsI GCAGTG 2 cut(s) 1830, 1892
BtsIMutI CAGTG 6 cut(s) 700, 1020, 1830, 1892, 2674, 2756
Cac8I GCNNGC 3 cut(s) 148, 214, 839
CaiI CAGNNNCTG 3 cut(s) 373, 2399, 2865
CciI TCATGA 2 cut(s) 1690, 2338
CfoI GCGC 2 cut(s) 152, 1658
Cfr10I RCCGGY 1 cut(s) 2414
Cfr13I GGNCC 7 cut(s) 236, 392, 761, 776, 1460, 2676, 2741
CseI GACGC 3 cut(s) 124, 1608, 2478
CsiI ACCWGGT 1 cut(s) 198
Csp6I GTAC 6 cut(s) 985, 1487, 1766, 1841, 2139, 2747
CviQI GTAC 6 cut(s) 985, 1487, 1766, 1841, 2139, 2747
DdeI CTNAG 9 cut(s) 504, 557, 584, 624, 833, 981, 2070, 2115, 2717
DraI TTTAAA 2 cut(s) 1713, 1774
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 3 cut(s) 472, 1840, 2302
EarI CTCTTC 3 cut(s) 472, 1840, 2302
EciI GGCGGA 1 cut(s) 2248
Eco130I CCWWGG 4 cut(s) 730, 765, 912, 1490
Eco31I GGTCTC 2 cut(s) 189, 567
Eco47I GGWCC 5 cut(s) 236, 392, 761, 776, 2741
Eco57I CTGAAG 4 cut(s) 417, 1821, 2541, 2850
Eco88I CYCGRG 1 cut(s) 192
EcoNI CCTNNNNNAGG 2 cut(s) 2735, 2869
EcoO109I RGGNCCY 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 1276
EcoRII CCWGG 7 cut(s) 198, 779, 856, 1109, 1801, 1828, 2142
EcoT14I CCWWGG 4 cut(s) 730, 765, 912, 1490
EcoT22I ATGCAT 1 cut(s) 1937
ErhI CCWWGG 4 cut(s) 730, 765, 912, 1490
FalI AAGNNNNNCTT 2 cut(s) 2311, 2343
FaqI GGGAC 9 cut(s) 175, 698, 747, 762, 1131, 1192, 1402, 1907, 2754
FauI CCCGC 2 cut(s) 189, 846
FauNDI CATATG 1 cut(s) 1340
FbaI TGATCA 1 cut(s) 2257
Fnu4HI GCNGC 6 cut(s) 162, 936, 1617, 1629, 2394, 2628
FokI GGATG 5 cut(s) 402, 1865, 2416, 2587, 2714
Fsp4HI GCNGC 6 cut(s) 162, 936, 1617, 1629, 2394, 2628
FspBI CTAG 7 cut(s) 227, 378, 534, 680, 921, 1143, 1464
GlaI GCGC 2 cut(s) 151, 1657
GluI GCNGC 6 cut(s) 162, 936, 1617, 1629, 2394, 2628
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 4 cut(s) 840, 996, 1748, 2202
HaeII RGCGCY 2 cut(s) 153, 1659
HaeIII GGCC 4 cut(s) 146, 1462, 1918, 2678
HapII CCGG 5 cut(s) 132, 139, 1590, 1632, 2415
HgaI GACGC 3 cut(s) 124, 1608, 2478
HhaI GCGC 2 cut(s) 152, 1658
Hin1I GRCGYC 2 cut(s) 135, 2489
Hin6I GCGC 2 cut(s) 150, 1656
HinP1I GCGC 2 cut(s) 150, 1656
HindIII AAGCTT 2 cut(s) 1638, 1949
HpaII CCGG 5 cut(s) 132, 139, 1590, 1632, 2415
HphI GGTGA 9 cut(s) 41, 870, 1436, 1817, 2041, 2393, 2484, 2674, 2793
Hpy166II GTNNAC 7 cut(s) 1291, 1500, 1744, 2215, 2621, 2665, 2848
Hpy8I GTNNAC 7 cut(s) 1291, 1500, 1744, 2215, 2621, 2665, 2848
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 9 cut(s) 92, 256, 392, 1039, 1761, 2085, 2230, 2550, 2933
HpyCH4IV ACGT 3 cut(s) 337, 1243, 1896
HpyF10VI GCNNNNNNNGC 7 cut(s) 75, 158, 834, 908, 1625, 1637, 1664
HpyF3I CTNAG 9 cut(s) 504, 557, 584, 624, 833, 981, 2070, 2115, 2717
HpySE526I ACGT 3 cut(s) 337, 1243, 1896
Hsp92I GRCGYC 2 cut(s) 135, 2489
HspAI GCGC 2 cut(s) 150, 1656
Ksp22I TGATCA 1 cut(s) 2257
LguI GCTCTTC 1 cut(s) 1840
LmnI GCTCC 5 cut(s) 322, 1308, 1729, 2147, 2516
Lsp1109I GCAGC 5 cut(s) 922, 1603, 1640, 2405, 2614
LweI GCATC 6 cut(s) 295, 424, 605, 658, 2401, 2807
MabI ACCWGGT 1 cut(s) 198
MaeI CTAG 7 cut(s) 227, 378, 534, 680, 921, 1143, 1464
MaeII ACGT 3 cut(s) 337, 1243, 1896
MbiI CCGCTC 1 cut(s) 594
MfeI CAATTG 1 cut(s) 1371
MflI RGATCY 7 cut(s) 229, 363, 407, 1250, 2173, 2296, 2477
MhlI GDGCHC 3 cut(s) 1138, 1293, 1734
MlyI GAGTC 6 cut(s) 197, 735, 1174, 2033, 2605, 2747
MmeI TCCRAC 2 cut(s) 825, 1030
Mph1103I ATGCAT 1 cut(s) 1937
MroXI GAANNNNTTC 4 cut(s) 689, 1639, 2205, 2355
MslI CAYNNNNRTG 2 cut(s) 570, 1455
MspA1I CMGCKG 2 cut(s) 176, 1325
MspI CCGG 5 cut(s) 132, 139, 1590, 1632, 2415
MspR9I CCNGG 8 cut(s) 200, 781, 858, 1111, 1591, 1803, 1830, 2144
MssI GTTTAAAC 1 cut(s) 1774
MunI CAATTG 1 cut(s) 1371
Mva1269I GAATGC 1 cut(s) 1937
MvaI CCWGG 7 cut(s) 200, 781, 858, 1111, 1803, 1830, 2144
MwoI GCNNNNNNNGC 7 cut(s) 75, 158, 834, 908, 1625, 1637, 1664
NciI CCSGG 1 cut(s) 1591
NcoI CCATGG 3 cut(s) 765, 912, 1490
NdeI CATATG 1 cut(s) 1340
NlaIV GGNNCC 8 cut(s) 763, 778, 1003, 1258, 2149, 2208, 2677, 2742
NmuCI GTSAC 5 cut(s) 349, 673, 2288, 2381, 2490
NsiI ATGCAT 1 cut(s) 1937
NspI RCATGY 4 cut(s) 216, 257, 441, 2911
PaeI GCATGC 1 cut(s) 216
PagI TCATGA 2 cut(s) 1690, 2338
PasI CCCWGGG 1 cut(s) 2143
PciI ACATGT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 1840
PctI GAATGC 1 cut(s) 1937
PdmI GAANNNNTTC 4 cut(s) 689, 1639, 2205, 2355
PfeI GAWTC 9 cut(s) 381, 402, 446, 588, 917, 2095, 2313, 2333, 2822
PflMI CCANNNNNTGG 3 cut(s) 736, 887, 1790
PkrI GCNGC 6 cut(s) 163, 937, 1618, 1630, 2395, 2629
PleI GAGTC 6 cut(s) 196, 734, 1174, 2032, 2604, 2747
PmeI GTTTAAAC 1 cut(s) 1774
PpsI GAGTC 6 cut(s) 196, 734, 1174, 2032, 2604, 2747
Ppu21I YACGTR 1 cut(s) 1244
PpuMI RGGWCCY 1 cut(s) 392
PscI ACATGT 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 392
Psp6I CCWGG 7 cut(s) 198, 779, 856, 1109, 1801, 1828, 2142
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 7 cut(s) 198, 779, 856, 1109, 1801, 1828, 2142
PspN4I GGNNCC 8 cut(s) 763, 778, 1003, 1258, 2149, 2208, 2677, 2742
PspPI GGNCC 7 cut(s) 236, 392, 761, 776, 1460, 2676, 2741
PspPPI RGGWCCY 1 cut(s) 392
PstI CTGCAG 2 cut(s) 1630, 1887
PstNI CAGNNNCTG 3 cut(s) 373, 2399, 2865
PsuI RGATCY 7 cut(s) 229, 363, 407, 1250, 2173, 2296, 2477
PvuII CAGCTG 1 cut(s) 1325
RsaI GTAC 6 cut(s) 986, 1488, 1767, 1842, 2140, 2748
RsaNI GTAC 6 cut(s) 985, 1487, 1766, 1841, 2139, 2747
RseI CAYNNNNRTG 2 cut(s) 570, 1455
SapI GCTCTTC 1 cut(s) 1840
SatI GCNGC 6 cut(s) 162, 936, 1617, 1629, 2394, 2628
Sau96I GGNCC 7 cut(s) 236, 392, 761, 776, 1460, 2676, 2741
ScaI AGTACT 1 cut(s) 986
SchI GAGTC 6 cut(s) 197, 735, 1174, 2033, 2605, 2747
ScrFI CCNGG 8 cut(s) 200, 781, 858, 1111, 1591, 1803, 1830, 2144
SduI GDGCHC 3 cut(s) 1138, 1293, 1734
SexAI ACCWGGT 1 cut(s) 198
SfaNI GCATC 6 cut(s) 295, 424, 605, 658, 2401, 2807
SfcI CTRYAG 2 cut(s) 1626, 1883
SinI GGWCC 5 cut(s) 236, 392, 761, 776, 2741
SmiMI CAYNNNNRTG 2 cut(s) 570, 1455
SmlI CTYRAG 3 cut(s) 387, 2039, 2317
SmoI CTYRAG 3 cut(s) 387, 2039, 2317
SpeI ACTAGT 1 cut(s) 1142
SphI GCATGC 1 cut(s) 216
SsiI CCGC 9 cut(s) 123, 162, 174, 182, 592, 839, 1115, 2233, 2916
SspI AATATT 3 cut(s) 751, 1216, 2527
SspMI CTAG 7 cut(s) 227, 378, 534, 680, 921, 1143, 1464
StyD4I CCNGG 8 cut(s) 198, 779, 856, 1109, 1589, 1801, 1828, 2142
StyI CCWWGG 4 cut(s) 730, 765, 912, 1490
TaiI ACGT 3 cut(s) 340, 1246, 1899
TaqI TCGA 4 cut(s) 596, 1199, 1382, 2223
TatI WGTACW 4 cut(s) 984, 1765, 1840, 2746
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 9 cut(s) 381, 402, 446, 588, 917, 2095, 2313, 2333, 2822
TscAI CASTG 6 cut(s) 700, 1020, 1830, 1892, 2674, 2763
TseFI GTSAC 5 cut(s) 349, 673, 2288, 2381, 2490
TseI GCWGC 5 cut(s) 935, 1616, 1628, 2393, 2627
Tsp45I GTSAC 5 cut(s) 349, 673, 2288, 2381, 2490
TspGWI ACGGA 2 cut(s) 145, 1470
TspRI CASTG 6 cut(s) 700, 1020, 1830, 1892, 2674, 2763
Van91I CCANNNNNTGG 3 cut(s) 736, 887, 1790
VneI GTGCAC 1 cut(s) 1289
VpaK11BI GGWCC 5 cut(s) 236, 392, 761, 776, 2741
XagI CCTNNNNNAGG 2 cut(s) 2735, 2869
XapI RAATTY 5 cut(s) 98, 1024, 1276, 2161, 2354
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 4 cut(s) 216, 257, 441, 2911
XcmI CCANNNNNNNNNTGG 2 cut(s) 737, 2447
XmnI GAANNNNTTC 4 cut(s) 689, 1639, 2205, 2355
XspI CTAG 7 cut(s) 227, 378, 534, 680, 921, 1143, 1464
ZrmI AGTACT 1 cut(s) 986
Zsp2I ATGCAT 1 cut(s) 1937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.