Rroxscaffold_6G00430460

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0007241
Physical Location & Seq
Reverse (-)
50585164 .. 50591979
6816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430460.1

Sequence Viewer

Length: 2949 bp
ATGAAGAAGAACCTTTACAACGGCAACAACACGAAAGTTCAGACTAATCATCATCATCATCATCACAGCAATAATGGCTTCCTTCCTAATTCTCTGAAATTCATTTCCTCGTGCATTAAGACCGCCTCCTCCGGGGTCCGGTCGGCCAGCGCCTCCGTCGCCGCTTCCATCTCCGCTGACCCGCACGAGTCCCGAGACCAGGTGTTGTGGGCATGCTTTGACAGACTAGATCTTGGTCCATCTTCCTTCAAACATGTTCTGCTACTCGGTTATGTCAATGGCTTTCAAGTCCTTGATGTTGAAGATGCCTCTGATGTCAGTGAGCTTGTATCAAAACGTGATGATCCAGTCACATTTTTACAGATCCAGCCCCTGCCTAGAATCTCTCAAGGTCCTGAAGGATTCAGATCTTCGCATCCATTACTCATGGTTGTTGCATGTGAAGAATCAAAGAACTCTGGTATGACACAAAATGGAAGAGATGGTTTGGTAAATGGTTATACTGAGCCTCAAACAAGCAACTCTGCTATGTCTCCTAGAGTTGTTCGGTTTTATTCACTAAGGTCTCACAGTTATGTTCATGTTCTGAGATTCCGCTCGACTGTGTATATGGTTAGATGCAGTCCTCAGATAGTGGCTGTTGGTCTTGCCTCTCAAATATACTGCTTTGATGCTGTCACTCTAGAGAACAAGTTCAGTGTTCTTACTTATCCTGTCCCCCAGTTGGGAGTCCAAGGACTGGTTGGGGTTAATATTGGATATGGTCCCATGGCTGTTGGTCCCAGGTGGTTGGCTTATGCCTCCAACAACCCTTTACTGTCAAACACTTGCCGACTAAGCCCGCAAAGTCTTACACCTCCAGGTGTCAGTCCATCAACTTCACCAAGTAATGGAAATCTGGTGGCTCGGTATGCCATGGAATCTAGTAAGCAGTTAGCTGCTGGGTTGCTAAATCTGGGAGACATGGGCTACAAAACTTTGTCCAAGTACTATCAACCAGATGGTTCCAGCTCTCCAGTGTCATCAAATTCTATCTGGAAAGTTGGGAAGGTTGGATCACATTCAACAGAAACAGATATAGCTGGAATGGTTGTTGTAAAAGACATTGTTTCCAGGGCGATTGTTTCACAATTTAGGGCACATACTAGTCCCATTTCTGCTCTATGTTTTGACCCAAGTGGGACTCTCCTTGTTACTGCCTCGATACATGGAAACAATATTAACATTTTTCGGATAATGCCATCACGTATTGGATCTGGCACCCAGAACTATGACTTGAATTCCTCTCATGTGCACCTTTACAAGCTCCATCGTGGCATGACATCAGCTGTAATCCAAGACATATGTTTTAGTCAATACAGTCAATGGATTACAATTGTTTCATCGAGGGGGACTTGCCATATTTTTACTCTTTCCCCCTTTGGTGGTGATACTACTCACAAGCAGAGTTCTCATGTTGATGGGCCTAGTCATTTGCCAGTTCCGTCTGTACCGTGGTGGTTCACTCCTTATTTCCTGACAAACCAGCAACTTTTTTCTCCACCACCACCCCCTGTTACCCTTTCTGTGGTTAGCAGAATAAAAGATAACTCCGGGTGGATCAATACAGTTAGTCATGCTGCGTCTTCTGCGGCCGGAAAAGCTTCCATTCCATCTGGCGCTGTTACTGCTGTATTTCATAATTCTGTTGCTCATGATCTGCAAACTTCTCATTTAAAGGTAACTGCTCTGGAGCACCTTTTGGTTTACACTCCTTCTGGTCATGCAGTACAGTTTAAACTACTTCCAAGAGTTGGGATAGAGCCTGGTGAAGCTACATCAAGAACAGTGCCAGGCTCTTCAGTACAGATACAGGATGAGGAGTTGCGAGTGAAAGTTGAACCTCTGCAGTGGTGGGATGTTTGCCGAAGAACTGATTGGCCTGAAAGAGAGGAATGCATTTCTGGGATTAAACTTATGAGACAAGAAGATGAGGAGACAGTCATGGATACTTTTGATTGTGATGTTAATGATATTGGGGATAAGGAGTCGGTGAAACCGCTTGAGCGATCTCACTTGTATCTCGCCAATGCTGAGGTTCAGATTAACTGTGGAAGGATTCCAATCTGGCAAAAGTCTAAGATATATTTCTATACAATGAGTACCCTGGGAGCCATTGAACACAATTTTACTGAAGATCTTACTGGAGGAGAGATTGAAATAGAAAAGGTTCCTGTTCACGAGGTCGAAATTAGGCGGAAGAATTTGCTACCTGTTTCTGATCAATTCCAAAGAGTGCAGTCTAATTGGAGTGACAGGGATCTTATTGGAAGAGGATTCTCAAGTTCGTCTTCTGATTCTCATGAAGCTAATGAAAAATTTCTGGAAAATGTTGGTATTTCTGGTGACAAGTTGGCATCAACTGGCAACCCAGATGCCGGGGTTTCTTATCCATCCATTCTCCAATCTGGGAATGGAAATAATGGGGAAACAAGAGGGAGATCTTTTTTGGCGTCACCTCTACTGAACCAAAGCTCCATAAAGAATAATATTGTTACAATACCTTCAAAAAAACCTACTTCAGGTGTTTCTCTGGTTAAGGATAGTAATTTTTCAAAGAGTCAATCCACTTTAACAGGTGGTTCCCTTGCTGCTGATAGTACTATTGCACAAGAGGTTCATTTGGCGAACAGTGGTGGGGCCAATGAAAGTTCAAATGTAAGTTCTAACCGTTCTGATCTGAGTATGAACATCATTGATGAGGGACCAGTACATGACTCACTGGATTTTGAGCAGTTTTTCCAAGAGGGGTATTGTAAAGCATCACCTTTGAGCAACTTTCCTGAATCAACTGAAGTTGTAACTGATGTGGACAGTAGCAACAGCCCCTGTGATAGGGAGAAATGCGAGGAAGATGGCGACGATGATGACATGCTTGGTGGTGTATTTGACTTCTCCGAGGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

982

Amino Acids

106.95

Weight (kDa)

5.83

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 86 - 479 3.5e-36 BCAS3, WD40 repeat
BCAS3 PF12490 615 - 752 2e-46 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1259
AccB7I CCANNNNNTGG 3 cut(s) 739, 890, 1793
AccBSI CCGCTC 1 cut(s) 597
AciI CCGC 9 cut(s) 123, 162, 174, 182, 595, 842, 1631, 2039, 2236
AclWI GGATC 6 cut(s) 338, 358, 1063, 1261, 1607, 2307
AcoI YGGCCR 2 cut(s) 144, 1632
AcsI RAATTY 5 cut(s) 98, 1027, 1279, 2242, 2357
AcuI CTGAAG 5 cut(s) 417, 1824, 2193, 2544, 2853
AcyI GRCGYC 1 cut(s) 2492
AfaI GTAC 7 cut(s) 989, 1491, 1770, 1845, 2143, 2641, 2751
AflIII ACRYGT 1 cut(s) 253
AhlI ACTAGT 1 cut(s) 1145
AjnI CCWGG 7 cut(s) 198, 782, 859, 1112, 1804, 1831, 2145
AjuI GAANNNNNNNTTGG 2 cut(s) 1900, 1932
AloI GAACNNNNNNTCC 2 cut(s) 2498, 2530
Alw21I GWGCWC 2 cut(s) 1296, 1737
Alw26I GTCTC 6 cut(s) 189, 537, 570, 954, 1954, 1970
Alw44I GTGCAC 1 cut(s) 1292
AlwI GGATC 6 cut(s) 338, 358, 1063, 1261, 1607, 2307
AlwNI CAGNNNCTG 2 cut(s) 373, 2868
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 5 cut(s) 144, 1463, 1632, 1919, 2679
ApaLI GTGCAC 1 cut(s) 1292
ApeKI GCWGC 3 cut(s) 938, 1619, 2630
ApoI RAATTY 5 cut(s) 98, 1027, 1279, 2242, 2357
Asp700I GAANNNNTTC 4 cut(s) 692, 1642, 2208, 2358
AspLEI GCGC 2 cut(s) 152, 1661
AspS9I GGNCC 8 cut(s) 136, 236, 392, 764, 779, 1463, 2679, 2744
AsuC2I CCSGG 3 cut(s) 133, 1594, 2419
AsuHPI GGTGA 7 cut(s) 873, 1439, 1820, 2044, 2396, 2487, 2796
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 6 cut(s) 136, 236, 392, 764, 779, 2744
BaeGI GKGCMC 2 cut(s) 1141, 1296
BanI GGYRCC 1 cut(s) 1259
BarI GAAGNNNNNNTAC 1 cut(s) 31
BauI CACGAG 3 cut(s) 109, 185, 2219
BbsI GAAGAC 2 cut(s) 1617, 2322
Bbv12I GWGCWC 2 cut(s) 1296, 1737
BbvCI CCTCAGC 1 cut(s) 2073
BbvI GCAGC 3 cut(s) 925, 1606, 2617
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 7 cut(s) 200, 784, 861, 1114, 1806, 1833, 2147
BciVI GTATCC 1 cut(s) 1981
BclI TGATCA 1 cut(s) 2260
BcnI CCSGG 3 cut(s) 133, 1594, 2419
BcoDI GTCTC 6 cut(s) 189, 537, 570, 954, 1954, 1970
BcuI ACTAGT 1 cut(s) 1145
BfaI CTAG 7 cut(s) 227, 378, 537, 683, 924, 1146, 1467
BfmI CTRYAG 1 cut(s) 1886
BfoI RGCGCY 2 cut(s) 153, 1662
BfuI GTATCC 1 cut(s) 1981
BglII AGATCT 4 cut(s) 229, 407, 2176, 2480
BisI GCNGC 5 cut(s) 162, 939, 1620, 1632, 2631
BlsI GCNGC 5 cut(s) 163, 940, 1621, 1633, 2632
BmcAI AGTACT 2 cut(s) 989, 2641
Bme18I GGWCC 6 cut(s) 136, 236, 392, 764, 779, 2744
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 8 cut(s) 136, 236, 392, 764, 779, 1463, 2679, 2744
BmrI ACTGGG 1 cut(s) 715
BmsI GCATC 7 cut(s) 295, 424, 608, 661, 2404, 2405, 2810
BmuI ACTGGG 1 cut(s) 715
BpiI GAAGAC 2 cut(s) 1617, 2322
BpmI CTGGAG 4 cut(s) 843, 999, 1751, 2205
Bpu10I CCTNAGC 1 cut(s) 2073
BpuEI CTTGAG 3 cut(s) 372, 2063, 2305
BpuMI CCSGG 3 cut(s) 133, 1594, 2419
BsaAI YACGTR 1 cut(s) 1247
BsaBI GATNNNNATC 2 cut(s) 406, 2102
BsaHI GRCGYC 1 cut(s) 2492
BsaI GGTCTC 2 cut(s) 189, 570
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 2498, 2528
Bse1I ACTGG 9 cut(s) 347, 721, 744, 1016, 1478, 2188, 2407, 2747, 2766
Bse8I GATNNNNATC 2 cut(s) 406, 2102
BseBI CCWGG 7 cut(s) 200, 784, 861, 1114, 1806, 1833, 2147
BseGI GGATG 4 cut(s) 415, 1861, 1903, 2432
BseJI GATNNNNATC 2 cut(s) 406, 2102
BseMII CTCAG 5 cut(s) 495, 578, 641, 2064, 2711
BseNI ACTGG 9 cut(s) 347, 721, 744, 1016, 1478, 2188, 2407, 2747, 2766
BseRI GAGGAG 4 cut(s) 118, 1874, 1988, 2202
BseSI GKGCMC 2 cut(s) 1141, 1296
BseX3I CGGCCG 1 cut(s) 1632
BseXI GCAGC 3 cut(s) 925, 1606, 2617
BseYI CCCAGC 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 2297
Bsh1285I CGRYCG 2 cut(s) 143, 1635
BshFI GGCC 5 cut(s) 146, 1465, 1634, 1921, 2681
BshNI GGYRCC 1 cut(s) 1259
BsiEI CGRYCG 2 cut(s) 143, 1635
BsiHKAI GWGCWC 2 cut(s) 1296, 1737
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 5 cut(s) 132, 139, 1593, 1635, 2418
BslFI GGGAC 8 cut(s) 175, 701, 750, 765, 1134, 1195, 1405, 2757
BsmAI GTCTC 6 cut(s) 189, 537, 570, 954, 1954, 1970
BsmFI GGGAC 8 cut(s) 175, 701, 750, 765, 1134, 1195, 1405, 2757
BsmI GAATGC 1 cut(s) 1940
BsnI GGCC 5 cut(s) 146, 1465, 1634, 1921, 2681
Bso31I GGTCTC 2 cut(s) 189, 570
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 1141, 1296, 1737
Bsp19I CCATGG 2 cut(s) 768, 915
BspACI CCGC 9 cut(s) 123, 162, 174, 182, 595, 842, 1631, 2039, 2236
BspANI GGCC 5 cut(s) 146, 1465, 1634, 1921, 2681
BspCNI CTCAG 5 cut(s) 496, 579, 640, 2065, 2712
BspHI TCATGA 2 cut(s) 1693, 2341
BspMAI CTGCAG 1 cut(s) 1890
BspPI GGATC 6 cut(s) 338, 358, 1063, 1261, 1607, 2307
BspQI GCTCTTC 1 cut(s) 1843
BspT107I GGYRCC 1 cut(s) 1259
BspTNI GGTCTC 2 cut(s) 189, 570
BsrBI CCGCTC 1 cut(s) 597
BsrI ACTGG 9 cut(s) 347, 721, 744, 1016, 1478, 2188, 2407, 2747, 2766
BssNI GRCGYC 1 cut(s) 2492
BssSI CACGAG 3 cut(s) 109, 185, 2219
BssT1I CCWWGG 3 cut(s) 733, 768, 915
Bst2BI CACGAG 3 cut(s) 109, 185, 2219
Bst2UI CCWGG 7 cut(s) 200, 784, 861, 1114, 1806, 1833, 2147
Bst6I CTCTTC 3 cut(s) 472, 1843, 2305
BstACI GRCGYC 1 cut(s) 2492
BstBAI YACGTR 1 cut(s) 1247
BstC8I GCNNGC 3 cut(s) 148, 214, 842
BstDEI CTNAG 8 cut(s) 504, 560, 587, 627, 836, 2073, 2118, 2720
BstDSI CCRYGG 3 cut(s) 768, 915, 1493
BstENI CCTNNNNNAGG 2 cut(s) 2559, 2872
BstF5I GGATG 4 cut(s) 415, 1861, 1903, 2432
BstH2I RGCGCY 2 cut(s) 153, 1662
BstHHI GCGC 2 cut(s) 152, 1661
BstMAI GTCTC 6 cut(s) 189, 537, 570, 954, 1954, 1970
BstMCI CGRYCG 2 cut(s) 143, 1635
BstMWI GCNNNNNNNGC 7 cut(s) 75, 158, 837, 911, 1628, 1640, 1667
BstNI CCWGG 7 cut(s) 200, 784, 861, 1114, 1806, 1833, 2147
BstNSI RCATGY 4 cut(s) 216, 257, 441, 2914
BstSFI CTRYAG 1 cut(s) 1886
BstSLI GKGCMC 2 cut(s) 1141, 1296
BstV1I GCAGC 3 cut(s) 925, 1606, 2617
BstV2I GAAGAC 2 cut(s) 1617, 2322
BstX2I RGATCY 7 cut(s) 229, 363, 407, 1253, 2176, 2299, 2480
BstXI CCANNNNNNTGG 1 cut(s) 790
BstYI RGATCY 7 cut(s) 229, 363, 407, 1253, 2176, 2299, 2480
BstZI CGGCCG 1 cut(s) 1632
BsuI GTATCC 1 cut(s) 1981
BsuRI GGCC 5 cut(s) 146, 1465, 1634, 1921, 2681
BtgI CCRYGG 3 cut(s) 768, 915, 1493
BtsCI GGATG 4 cut(s) 415, 1861, 1903, 2432
BtsI GCAGTG 1 cut(s) 1895
BtsIMutI CAGTG 7 cut(s) 325, 703, 1023, 1833, 1895, 2677, 2759
Cac8I GCNNGC 3 cut(s) 148, 214, 842
CaiI CAGNNNCTG 2 cut(s) 373, 2868
CciI TCATGA 2 cut(s) 1693, 2341
CfoI GCGC 2 cut(s) 152, 1661
Cfr13I GGNCC 8 cut(s) 136, 236, 392, 764, 779, 1463, 2679, 2744
CseI GACGC 2 cut(s) 1611, 2481
CsiI ACCWGGT 1 cut(s) 198
Csp6I GTAC 7 cut(s) 988, 1490, 1769, 1844, 2142, 2640, 2750
CviQI GTAC 7 cut(s) 988, 1490, 1769, 1844, 2142, 2640, 2750
DdeI CTNAG 8 cut(s) 504, 560, 587, 627, 836, 2073, 2118, 2720
DraI TTTAAA 2 cut(s) 1716, 1777
EaeI YGGCCR 2 cut(s) 144, 1632
EagI CGGCCG 1 cut(s) 1632
Eam1104I CTCTTC 3 cut(s) 472, 1843, 2305
EarI CTCTTC 3 cut(s) 472, 1843, 2305
EciI GGCGGA 1 cut(s) 2251
EclXI CGGCCG 1 cut(s) 1632
Eco130I CCWWGG 3 cut(s) 733, 768, 915
Eco31I GGTCTC 2 cut(s) 189, 570
Eco47I GGWCC 6 cut(s) 136, 236, 392, 764, 779, 2744
Eco52I CGGCCG 1 cut(s) 1632
Eco57I CTGAAG 5 cut(s) 417, 1824, 2193, 2544, 2853
Eco88I CYCGRG 1 cut(s) 192
EcoNI CCTNNNNNAGG 2 cut(s) 2559, 2872
EcoO109I RGGNCCY 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 1279
EcoRII CCWGG 7 cut(s) 198, 782, 859, 1112, 1804, 1831, 2145
EcoT14I CCWWGG 3 cut(s) 733, 768, 915
EcoT22I ATGCAT 1 cut(s) 1940
ErhI CCWWGG 3 cut(s) 733, 768, 915
FalI AAGNNNNNCTT 2 cut(s) 2314, 2346
FaqI GGGAC 8 cut(s) 175, 701, 750, 765, 1134, 1195, 1405, 2757
FauI CCCGC 2 cut(s) 189, 849
FauNDI CATATG 1 cut(s) 1343
FbaI TGATCA 1 cut(s) 2260
Fnu4HI GCNGC 5 cut(s) 162, 939, 1620, 1632, 2631
FokI GGATG 4 cut(s) 402, 1868, 1910, 2419
Fsp4HI GCNGC 5 cut(s) 162, 939, 1620, 1632, 2631
FspBI CTAG 7 cut(s) 227, 378, 537, 683, 924, 1146, 1467
GlaI GCGC 2 cut(s) 151, 1660
GluI GCNGC 5 cut(s) 162, 939, 1620, 1632, 2631
GsaI CCCAGC 1 cut(s) 945
GsuI CTGGAG 4 cut(s) 843, 999, 1751, 2205
HaeII RGCGCY 2 cut(s) 153, 1662
HaeIII GGCC 5 cut(s) 146, 1465, 1634, 1921, 2681
HapII CCGG 5 cut(s) 132, 139, 1593, 1635, 2418
HgaI GACGC 2 cut(s) 1611, 2481
HhaI GCGC 2 cut(s) 152, 1661
Hin1I GRCGYC 1 cut(s) 2492
Hin6I GCGC 2 cut(s) 150, 1659
HinP1I GCGC 2 cut(s) 150, 1659
HindIII AAGCTT 1 cut(s) 1641
HpaII CCGG 5 cut(s) 132, 139, 1593, 1635, 2418
HphI GGTGA 7 cut(s) 873, 1439, 1820, 2044, 2396, 2487, 2796
Hpy166II GTNNAC 5 cut(s) 1294, 1503, 1747, 2218, 2851
Hpy8I GTNNAC 5 cut(s) 1294, 1503, 1747, 2218, 2851
Hpy99I CGWCG 2 cut(s) 161, 2903
HpyAV CCTTC 8 cut(s) 92, 256, 392, 1042, 1764, 2088, 2553, 2936
HpyCH4IV ACGT 2 cut(s) 337, 1246
HpyF10VI GCNNNNNNNGC 7 cut(s) 75, 158, 837, 911, 1628, 1640, 1667
HpyF3I CTNAG 8 cut(s) 504, 560, 587, 627, 836, 2073, 2118, 2720
HpySE526I ACGT 2 cut(s) 337, 1246
Hsp92I GRCGYC 1 cut(s) 2492
HspAI GCGC 2 cut(s) 150, 1659
Ksp22I TGATCA 1 cut(s) 2260
LguI GCTCTTC 1 cut(s) 1843
LmnI GCTCC 4 cut(s) 1311, 1732, 2150, 2519
Lsp1109I GCAGC 3 cut(s) 925, 1606, 2617
LweI GCATC 7 cut(s) 295, 424, 608, 661, 2404, 2405, 2810
MabI ACCWGGT 1 cut(s) 198
MaeI CTAG 7 cut(s) 227, 378, 537, 683, 924, 1146, 1467
MaeII ACGT 2 cut(s) 337, 1246
MbiI CCGCTC 1 cut(s) 597
MfeI CAATTG 1 cut(s) 1374
MflI RGATCY 7 cut(s) 229, 363, 407, 1253, 2176, 2299, 2480
MhlI GDGCHC 3 cut(s) 1141, 1296, 1737
MlyI GAGTC 6 cut(s) 197, 738, 1177, 2036, 2608, 2750
MmeI TCCRAC 2 cut(s) 828, 1033
Mph1103I ATGCAT 1 cut(s) 1940
MroXI GAANNNNTTC 4 cut(s) 692, 1642, 2208, 2358
MslI CAYNNNNRTG 2 cut(s) 573, 1458
MspA1I CMGCKG 2 cut(s) 176, 1328
MspI CCGG 5 cut(s) 132, 139, 1593, 1635, 2418
MssI GTTTAAAC 1 cut(s) 1777
MunI CAATTG 1 cut(s) 1374
Mva1269I GAATGC 1 cut(s) 1940
MvaI CCWGG 7 cut(s) 200, 784, 861, 1114, 1806, 1833, 2147
MwoI GCNNNNNNNGC 7 cut(s) 75, 158, 837, 911, 1628, 1640, 1667
NciI CCSGG 3 cut(s) 133, 1594, 2419
NcoI CCATGG 2 cut(s) 768, 915
NdeI CATATG 1 cut(s) 1343
NmuCI GTSAC 5 cut(s) 349, 676, 2291, 2384, 2493
NsiI ATGCAT 1 cut(s) 1940
NspI RCATGY 4 cut(s) 216, 257, 441, 2914
PaeI GCATGC 1 cut(s) 216
PagI TCATGA 2 cut(s) 1693, 2341
PasI CCCWGGG 1 cut(s) 2146
PciI ACATGT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 1843
PctI GAATGC 1 cut(s) 1940
PdmI GAANNNNTTC 4 cut(s) 692, 1642, 2208, 2358
PfeI GAWTC 9 cut(s) 381, 402, 446, 591, 920, 2098, 2316, 2336, 2825
PflMI CCANNNNNTGG 3 cut(s) 739, 890, 1793
PkrI GCNGC 5 cut(s) 163, 940, 1621, 1633, 2632
PleI GAGTC 6 cut(s) 196, 737, 1177, 2035, 2607, 2750
PmeI GTTTAAAC 1 cut(s) 1777
PpsI GAGTC 6 cut(s) 196, 737, 1177, 2035, 2607, 2750
Ppu21I YACGTR 1 cut(s) 1247
PpuMI RGGWCCY 1 cut(s) 392
PscI ACATGT 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 392
Psp6I CCWGG 7 cut(s) 198, 782, 859, 1112, 1804, 1831, 2145
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 7 cut(s) 198, 782, 859, 1112, 1804, 1831, 2145
PspPI GGNCC 8 cut(s) 136, 236, 392, 764, 779, 1463, 2679, 2744
PspPPI RGGWCCY 1 cut(s) 392
PstI CTGCAG 1 cut(s) 1890
PstNI CAGNNNCTG 2 cut(s) 373, 2868
PsuI RGATCY 7 cut(s) 229, 363, 407, 1253, 2176, 2299, 2480
PvuII CAGCTG 1 cut(s) 1328
RsaI GTAC 7 cut(s) 989, 1491, 1770, 1845, 2143, 2641, 2751
RsaNI GTAC 7 cut(s) 988, 1490, 1769, 1844, 2142, 2640, 2750
RseI CAYNNNNRTG 2 cut(s) 573, 1458
SapI GCTCTTC 1 cut(s) 1843
SatI GCNGC 5 cut(s) 162, 939, 1620, 1632, 2631
Sau96I GGNCC 8 cut(s) 136, 236, 392, 764, 779, 1463, 2679, 2744
ScaI AGTACT 2 cut(s) 989, 2641
SchI GAGTC 6 cut(s) 197, 738, 1177, 2036, 2608, 2750
SduI GDGCHC 3 cut(s) 1141, 1296, 1737
SexAI ACCWGGT 1 cut(s) 198
SfaNI GCATC 7 cut(s) 295, 424, 608, 661, 2404, 2405, 2810
SfcI CTRYAG 1 cut(s) 1886
SinI GGWCC 6 cut(s) 136, 236, 392, 764, 779, 2744
SmiMI CAYNNNNRTG 2 cut(s) 573, 1458
SmlI CTYRAG 3 cut(s) 387, 2042, 2320
SmoI CTYRAG 3 cut(s) 387, 2042, 2320
SpeI ACTAGT 1 cut(s) 1145
SphI GCATGC 1 cut(s) 216
SsiI CCGC 9 cut(s) 123, 162, 174, 182, 595, 842, 1631, 2039, 2236
SspI AATATT 3 cut(s) 754, 1219, 2530
SspMI CTAG 7 cut(s) 227, 378, 537, 683, 924, 1146, 1467
StyI CCWWGG 3 cut(s) 733, 768, 915
TaiI ACGT 2 cut(s) 340, 1249
TaqI TCGA 4 cut(s) 599, 1202, 1385, 2226
TatI WGTACW 5 cut(s) 987, 1768, 1843, 2639, 2749
TauI GCSGC 2 cut(s) 164, 1634
TfiI GAWTC 9 cut(s) 381, 402, 446, 591, 920, 2098, 2316, 2336, 2825
TscAI CASTG 7 cut(s) 325, 703, 1023, 1833, 1895, 2677, 2766
TseFI GTSAC 5 cut(s) 349, 676, 2291, 2384, 2493
TseI GCWGC 3 cut(s) 938, 1619, 2630
Tsp45I GTSAC 5 cut(s) 349, 676, 2291, 2384, 2493
TspGWI ACGGA 2 cut(s) 145, 1473
TspRI CASTG 7 cut(s) 325, 703, 1023, 1833, 1895, 2677, 2766
Van91I CCANNNNNTGG 3 cut(s) 739, 890, 1793
VneI GTGCAC 1 cut(s) 1292
VpaK11BI GGWCC 6 cut(s) 136, 236, 392, 764, 779, 2744
XagI CCTNNNNNAGG 2 cut(s) 2559, 2872
XapI RAATTY 5 cut(s) 98, 1027, 1279, 2242, 2357
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 4 cut(s) 216, 257, 441, 2914
XcmI CCANNNNNNNNNTGG 2 cut(s) 740, 2450
XmnI GAANNNNTTC 4 cut(s) 692, 1642, 2208, 2358
XspI CTAG 7 cut(s) 227, 378, 537, 683, 924, 1146, 1467
ZrmI AGTACT 2 cut(s) 989, 2641
Zsp2I ATGCAT 1 cut(s) 1940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.