pycom04g18810

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0007241
Physical Location & Seq
Forward (+)
20690283 .. 20692172
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18810.2

Sequence Viewer

Length: 762 bp
ATGGAAATAGAGAAGGTTCCTGGTCAAGAGGTTGAAATGAGGCGGAAGGATTTGCTACCTGTTGTTCATCCTTTTCATAGGTTTCAGTCTGACTGGAATGGCAGGCATCTAATTGGACGAGGATCCTCGAGTTCATCTTCTGATTCTCATGAAGATAAAGAAAAGATTCAGGAAAATTCTGGTATTTCTGGTGAGAATTTGACATCTATTGGCTCAGCTGAAAATGGTAACCCAGATGCTGGTAATTCCCATCCATATATTCTCCAACCTGGAAATGGACAGAATGGCGAAAAAAGAGGGAGATCATTTTCGGTATCACCTCACTTGAACTATATCTCCACAAAGAAAAATATTACTTCAGTATCCCTGAAACAACCTACCTCAGGTGTTTCTGTTGGTGAGGATGGTAATTTTTCAAAGTGTCTATCCACTTTAACAAGCGGCTCCCCTTCAGCTGATAGAACAATTGCAACAAGGGTTCAGTCGGTGAATAGTGGTGGGGCCAGTGAAGGTTCCAATGTAAGTTCTAACCGTTATGATCGTAGTATGAACATGCTGGATGAGGGACCAGTACATGAATCACCGGATTTTGAGCCTTTTTTCCAAGAGGGGTATTGTAAAGCATCACCTCTGAGCAATTTTCGTGAGTCGACTGAAGTTGTAACTGATGTAGACAGCCCCTGTGATAGGGAGAAATGCGAGGAAGATGGTGATAGTGATGACATGCTTGGTGGTGTTTTTGCCTTCTCCGAGGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

254

Amino Acids

27.37

Weight (kDa)

4.82

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 239
AccI GTMKAC 2 cut(s) 650, 672
AciI CCGC 2 cut(s) 43, 441
AclWI GGATC 2 cut(s) 117, 130
AcsI RAATTY 2 cut(s) 175, 196
AcuI CTGAAG 3 cut(s) 342, 435, 675
AfaI GTAC 1 cut(s) 573
AfiI CCNNNNNNNGG 4 cut(s) 239, 275, 383, 687
AgsI TTSAA 3 cut(s) 35, 328, 417
AjnI CCWGG 2 cut(s) 19, 268
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 218, 455
AluI AGCT 2 cut(s) 218, 455
AlwI GGATC 2 cut(s) 117, 130
AlwNI CAGNNNCTG 2 cut(s) 239, 681
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 1 cut(s) 501
ApoI RAATTY 2 cut(s) 175, 196
Asp700I GAANNNNTTC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 501, 566
AsuHPI GGTGA 7 cut(s) 203, 309, 410, 499, 573, 618, 722
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 1 cut(s) 566
AxyI CCTNAGG 1 cut(s) 382
BaeI ACNNNNGTAYC 2 cut(s) 345, 378
BamHI GGATCC 1 cut(s) 122
BccI CCATC 3 cut(s) 258, 398, 701
BciT130I CCWGG 2 cut(s) 21, 270
BciVI GTATCC 1 cut(s) 373
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 1 cut(s) 442
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 443
Bme1390I CCNGG 2 cut(s) 21, 270
Bme18I GGWCC 1 cut(s) 566
BmeT110I CYCGRG 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 501, 566
BmiI GGNNCC 6 cut(s) 18, 124, 445, 502, 514, 567
BmrFI CCNGG 2 cut(s) 21, 270
BmsI GCATC 3 cut(s) 115, 226, 632
Bpu1102I GCTNAGC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 750
BsaWI WCCGGW 1 cut(s) 583
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 275, 383, 687
Bse1I ACTGG 3 cut(s) 98, 504, 569
Bse21I CCTNAGG 1 cut(s) 382
BseBI CCWGG 2 cut(s) 21, 270
BseDI CCNNGG 1 cut(s) 750
BseGI GGATG 4 cut(s) 67, 250, 409, 565
BseLI CCNNNNNNNGG 4 cut(s) 239, 275, 383, 687
BseMII CTCAG 3 cut(s) 228, 396, 623
BseNI ACTGG 3 cut(s) 98, 504, 569
BshFI GGCC 1 cut(s) 503
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 4 cut(s) 239, 275, 383, 687
BsmFI GGGAC 1 cut(s) 579
BsnI GGCC 1 cut(s) 503
BsoBI CYCGRG 1 cut(s) 127
Bsp143I GATC 3 cut(s) 122, 302, 538
Bsp1720I GCTNAGC 1 cut(s) 214
BspACI CCGC 2 cut(s) 43, 441
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 3 cut(s) 227, 395, 624
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 6 cut(s) 18, 124, 445, 502, 514, 567
BspPI GGATC 2 cut(s) 117, 130
BsrI ACTGG 3 cut(s) 98, 504, 569
BssECI CCNNGG 1 cut(s) 750
BssMI GATC 3 cut(s) 122, 302, 538
Bst2UI CCWGG 2 cut(s) 21, 270
Bst4CI ACNGT 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 214, 382, 632
BstEII GGTNACC 1 cut(s) 227
BstENI CCTNNNNNAGG 2 cut(s) 381, 685
BstF5I GGATG 4 cut(s) 67, 250, 409, 565
BstKTI GATC 3 cut(s) 125, 305, 541
BstMBI GATC 3 cut(s) 122, 302, 538
BstNI CCWGG 2 cut(s) 21, 270
BstNSI RCATGY 2 cut(s) 556, 727
BstPI GGTNACC 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 19, 268
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
Bsu36I CCTNAGG 1 cut(s) 382
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 503
BtsCI GGATG 4 cut(s) 67, 250, 409, 565
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 104
CaiI CAGNNNCTG 2 cut(s) 239, 681
CciI TCATGA 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 501, 566
Csp6I GTAC 1 cut(s) 572
CviAII CATG 4 cut(s) 149, 553, 575, 724
CviJI RGCY 7 cut(s) 213, 218, 444, 455, 503, 595, 678
CviKI_1 RGCY 7 cut(s) 213, 218, 444, 455, 503, 595, 678
CviQI GTAC 1 cut(s) 572
DdeI CTNAG 3 cut(s) 214, 382, 632
DpnI GATC 3 cut(s) 124, 304, 540
DpnII GATC 3 cut(s) 122, 302, 538
EciI GGCGGA 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 566
Eco57I CTGAAG 3 cut(s) 342, 435, 675
Eco81I CCTNAGG 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 227
EcoNI CCTNNNNNAGG 2 cut(s) 381, 685
EcoO65I GGTNACC 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 19, 268
FaeI CATG 4 cut(s) 152, 556, 578, 727
FaqI GGGAC 1 cut(s) 579
FatI CATG 4 cut(s) 148, 552, 574, 723
FblI GTMKAC 2 cut(s) 650, 672
Fnu4HI GCNGC 1 cut(s) 442
FokI GGATG 4 cut(s) 54, 237, 416, 572
Fsp4HI GCNGC 1 cut(s) 442
GluI GCNGC 1 cut(s) 442
HaeIII GGCC 1 cut(s) 503
HapII CCGG 1 cut(s) 584
Hin1II CATG 4 cut(s) 152, 556, 578, 727
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HinfI GANTC 4 cut(s) 143, 166, 578, 647
HpaII CCGG 1 cut(s) 584
HphI GGTGA 7 cut(s) 203, 309, 410, 499, 573, 618, 722
Hpy166II GTNNAC 2 cut(s) 651, 673
Hpy188I TCNGA 4 cut(s) 91, 142, 633, 751
Hpy188III TCNNGA 4 cut(s) 26, 149, 170, 644
Hpy8I GTNNAC 2 cut(s) 651, 673
HpyAV CCTTC 6 cut(s) 7, 40, 459, 503, 749, 754
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4V TGCA 1 cut(s) 470
HpyF3I CTNAG 3 cut(s) 214, 382, 632
Hsp92II CATG 4 cut(s) 152, 556, 578, 727
Kzo9I GATC 3 cut(s) 122, 302, 538
LmnI GCTCC 1 cut(s) 449
LweI GCATC 3 cut(s) 115, 226, 632
MaeIII GTNAC 2 cut(s) 227, 661
MalI GATC 3 cut(s) 124, 304, 540
MboI GATC 3 cut(s) 122, 302, 538
MboII GAAGA 3 cut(s) 129, 164, 716
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 1 cut(s) 122
MluCI AATT 7 cut(s) 111, 175, 196, 244, 409, 465, 637
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 1 cut(s) 434
MspA1I CMGCKG 2 cut(s) 218, 455
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 2 cut(s) 21, 270
MunI CAATTG 1 cut(s) 465
MvaI CCWGG 2 cut(s) 21, 270
NdeII GATC 3 cut(s) 122, 302, 538
NlaIII CATG 4 cut(s) 152, 556, 578, 727
NlaIV GGNNCC 6 cut(s) 18, 124, 445, 502, 514, 567
NspI RCATGY 2 cut(s) 556, 727
PaeR7I CTCGAG 1 cut(s) 127
PagI TCATGA 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 3 cut(s) 143, 166, 578
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 1 cut(s) 443
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
Psp6I CCWGG 2 cut(s) 19, 268
PspEI GGTNACC 1 cut(s) 227
PspGI CCWGG 2 cut(s) 19, 268
PspN4I GGNNCC 6 cut(s) 18, 124, 445, 502, 514, 567
PspPI GGNCC 2 cut(s) 501, 566
PspXI VCTCGAGB 1 cut(s) 127
PstNI CAGNNNCTG 2 cut(s) 239, 681
PsuI RGATCY 1 cut(s) 122
PvuII CAGCTG 2 cut(s) 218, 455
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
SalI GTCGAC 1 cut(s) 649
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 1 cut(s) 442
Sau3AI GATC 3 cut(s) 122, 302, 538
Sau96I GGNCC 2 cut(s) 501, 566
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 2 cut(s) 21, 270
SfaNI GCATC 3 cut(s) 115, 226, 632
Sfr274I CTCGAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 566
SlaI CTCGAG 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 7 cut(s) 111, 175, 196, 244, 409, 465, 637
SsiI CCGC 2 cut(s) 43, 441
SspI AATATT 1 cut(s) 352
StyD4I CCNGG 2 cut(s) 19, 268
TaaI ACNGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 128, 650
TasI AATT 7 cut(s) 111, 175, 196, 244, 409, 465, 637
TatI WGTACW 1 cut(s) 571
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 3 cut(s) 143, 166, 578
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 1 cut(s) 511
TspDTI ATGAA 6 cut(s) 56, 65, 123, 165, 563, 591
TspRI CASTG 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 566
XagI CCTNNNNNAGG 2 cut(s) 381, 685
XapI RAATTY 2 cut(s) 175, 196
XceI RCATGY 2 cut(s) 556, 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 127
XmiI GTMKAC 2 cut(s) 650, 672
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.