Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Reverse (-)

20729125 .. 20731356

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAAGAAGCAGTTGTAACGAGGTATTGGTGTCATATGTGTTCTCAAACTGTGAATCCAGTCATGGAAGCTGAGATCAAATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATGGAAGATGACGACGATCATGATTCTTCTGATCCGGCTGATGTTAGAGCAAACAACTCTCTTTGGGCGCCTATCTTGATGGAACTTATGAATGATCCTGTGCGTCGTAGGAGAAACCAGAGTGTTGAGTCTGTTGAAGATAATCAAAACGAGGTACAGACCGAGAACAATGAAGACGATGGAGAAAATGATTTGGATTGGCAGCTTCAAGAGATTCTCAGGAGAAGGAGAAGACATTCCGCTGCTGTTTTGCAGTTGCTTCAGGGGATACGAGCAGGGTTGTCTGTAGAATCTGAGAGTACTGGTAATGGAGGTAATAATCCGGGACGGGTGATCTTGATCAATACCTCCAATCAGACTATCACGGTTCAAAACTCTGCTGATATGGATTCTGTACCTGCTGGTTCTTTAGGTGACTATTTCATTGGTCCTGGATTTGAAATGTTGCTTCAACGTCTAGCTGAGAATGATCCCAACAGATATGGAACACCTCCTGCTAAAAAAGAAGCTGTCGAGGCTTTGGCTACTGTGAAAATCGAAGAGACTCTGCAATGTTCGGTTTGTTTAGATGATTTTGAGATTGGAACTGAGGCAAAGCTGATGCCCTGTACGCACAAGTTTCATAGTGACTGCTTGTTACCATGGCTTGAGCTTCACAGTTCATGCCCGGTTTGCAGATATCAGTTACCTGCAGATGAAGCCAAGACTGATTCAGTAACAACAACGAGCGATAACAATGGAAGCAGTAGTGCTTCTGCTACAACCAGCCATGGAGCTGAGAACAGCGATGGAAACCGGCGCCAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGAACGAGAACAATGACGGAAGCGGATTCTCGATCCCGTGGCCGTTTAGCACCTTGTTCTCCTCGTCGCAAGATAGCAATGCACCAACGGATTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

351

Amino Acids

38.96

Weight (kDa)

4.23

Isoelectric Point (pI)

72.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 39	9.8e-14	zinc-ribbon
zf-RING_2	PF13639	222 - 264	1.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	222 - 263	2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	222 - 250	1.1e-09	RING-like zinc finger
zf-C3HC4	PF00097	223 - 263	3.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	234 - 264	9.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	520, 811
AccB1I	GGYRCC	2 cut(s)	181, 912
AciI	CCGC	2 cut(s)	354, 978
AclWI	GGATC	4 cut(s)	140, 203, 578, 982
AcoI	YGGCCR	1 cut(s)	995
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	2 cut(s)	182, 913
AfaI	GTAC	4 cut(s)	270, 415, 510, 724
AgsI	TTSAA	6 cut(s)	110, 251, 323, 485, 554, 566
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	7 cut(s)	71, 319, 575, 623, 712, 766, 890
AluI	AGCT	7 cut(s)	71, 319, 575, 623, 712, 766, 890
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	4 cut(s)	140, 203, 578, 982
AoxI	GGCC	1 cut(s)	995
ApeKI	GCWGC	2 cut(s)	316, 356
Asp700I	GAANNNNTTC	1 cut(s)	349
AspLEI	GCGC	2 cut(s)	184, 915
AspS9I	GGNCC	1 cut(s)	542
AsuC2I	CCSGG	2 cut(s)	438, 782
AsuHPI	GGTGA	2 cut(s)	457, 539
AvaII	GGWCC	1 cut(s)	542
BanI	GGYRCC	2 cut(s)	181, 912
BbsI	GAAGAC	2 cut(s)	294, 352
BbvI	GCAGC	2 cut(s)	328, 343
BccI	CCATC	3 cut(s)	187, 287, 896
BceAI	ACGGC	1 cut(s)	982
BciT130I	CCWGG	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	375
BclI	TGATCA	1 cut(s)	453
BcnI	CCSGG	2 cut(s)	438, 782
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	2 cut(s)	572, 1050
BfmI	CTRYAG	2 cut(s)	399, 804
BfoI	RGCGCY	2 cut(s)	185, 916
BfuAI	ACCTGC	2 cut(s)	520, 811
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	2 cut(s)	317, 357
BlsI	GCNGC	2 cut(s)	318, 358
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	3 cut(s)	438, 546, 782
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	2 cut(s)	183, 914
BmrFI	CCNGG	3 cut(s)	438, 546, 782
BmsI	GCATC	1 cut(s)	705
BpiI	GAAGAC	2 cut(s)	294, 352
BpuEI	CTTGAG	1 cut(s)	782
BpuMI	CCSGG	2 cut(s)	438, 782
BsaBI	GATNNNNATC	1 cut(s)	452
BsaHI	GRCGYC	2 cut(s)	182, 913
BsaJI	CCNNGG	3 cut(s)	755, 883, 992
Bse118I	RCCGGY	1 cut(s)	909
Bse1I	ACTGG	2 cut(s)	59, 421
Bse3DI	GCAATG	2 cut(s)	671, 1039
Bse8I	GATNNNNATC	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	755, 883, 992
BseJI	GATNNNNATC	1 cut(s)	452
BseMI	GCAATG	2 cut(s)	671, 1039
BseMII	CTCAG	6 cut(s)	63, 346, 399, 567, 693, 882
BseNI	ACTGG	2 cut(s)	59, 421
BseRI	GAGGAG	6 cut(s)	956, 959, 962, 965, 968, 1006
BseXI	GCAGC	2 cut(s)	328, 343
BshFI	GGCC	1 cut(s)	997
BshNI	GGYRCC	2 cut(s)	181, 912
BsiSI	CCGG	4 cut(s)	149, 437, 782, 910
BslFI	GGGAC	2 cut(s)	69, 453
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	2 cut(s)	69, 453
BsnI	GGCC	1 cut(s)	997
Bsp143I	GATC	8 cut(s)	75, 130, 145, 208, 447, 453, 583, 987
Bsp19I	CCATGG	2 cut(s)	755, 883
BspACI	CCGC	2 cut(s)	354, 978
BspANI	GGCC	1 cut(s)	997
BspCNI	CTCAG	6 cut(s)	64, 345, 400, 568, 694, 883
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	183, 914
BspMAI	CTGCAG	1 cut(s)	808
BspMI	ACCTGC	2 cut(s)	520, 811
BspPI	GGATC	4 cut(s)	140, 203, 578, 982
BspT107I	GGYRCC	2 cut(s)	181, 912
BsrDI	GCAATG	2 cut(s)	671, 1039
BsrFI	RCCGGY	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	59, 421
BssAI	RCCGGY	1 cut(s)	909
BssECI	CCNNGG	3 cut(s)	755, 883, 992
BssMI	GATC	8 cut(s)	75, 130, 145, 208, 447, 453, 583, 987
BssNI	GRCGYC	2 cut(s)	182, 913
BssT1I	CCWWGG	2 cut(s)	755, 883
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	4 cut(s)	52, 481, 643, 773
Bst6I	CTCTTC	2 cut(s)	648, 933
BstACI	GRCGYC	2 cut(s)	182, 913
BstDEI	CTNAG	6 cut(s)	72, 332, 408, 576, 702, 891
BstDSI	CCRYGG	3 cut(s)	755, 883, 992
BstH2I	RGCGCY	2 cut(s)	185, 916
BstHHI	GCGC	2 cut(s)	184, 915
BstKTI	GATC	8 cut(s)	78, 133, 148, 211, 450, 456, 586, 990
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	8 cut(s)	75, 130, 145, 208, 447, 453, 583, 987
BstMWI	GCNNNNNNNGC	4 cut(s)	629, 724, 786, 812
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	3 cut(s)	436, 544, 780
BstSFI	CTRYAG	2 cut(s)	399, 804
BstV1I	GCAGC	2 cut(s)	328, 343
BstV2I	GAAGAC	2 cut(s)	294, 352
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	997
BtgI	CCRYGG	3 cut(s)	755, 883, 992
BtgZI	GCGATG	1 cut(s)	915
BveI	ACCTGC	2 cut(s)	520, 811
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	2 cut(s)	184, 915
Cfr10I	RCCGGY	1 cut(s)	909
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	4 cut(s)	269, 414, 509, 723
CviAII	CATG	5 cut(s)	64, 134, 756, 777, 884
CviQI	GTAC	4 cut(s)	269, 414, 509, 723
DdeI	CTNAG	6 cut(s)	72, 332, 408, 576, 702, 891
DinI	GGCGCC	2 cut(s)	183, 914
DpnI	GATC	8 cut(s)	77, 132, 147, 210, 449, 455, 585, 989
DpnII	GATC	8 cut(s)	75, 130, 145, 208, 447, 453, 583, 987
EaeI	YGGCCR	1 cut(s)	995
Eam1104I	CTCTTC	2 cut(s)	648, 933
EarI	CTCTTC	2 cut(s)	648, 933
Eco130I	CCWWGG	2 cut(s)	755, 883
Eco32I	GATATC	1 cut(s)	794
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	794
EcoT14I	CCWWGG	2 cut(s)	755, 883
EgeI	GGCGCC	2 cut(s)	183, 914
EheI	GGCGCC	2 cut(s)	183, 914
ErhI	CCWWGG	2 cut(s)	755, 883
FaeI	CATG	5 cut(s)	67, 137, 759, 780, 887
FaqI	GGGAC	2 cut(s)	69, 453
FatI	CATG	5 cut(s)	63, 133, 755, 776, 883
FauNDI	CATATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	317, 357
Fsp4HI	GCNGC	2 cut(s)	317, 357
FspBI	CTAG	2 cut(s)	572, 1050
GlaI	GCGC	2 cut(s)	183, 914
GluI	GCNGC	2 cut(s)	317, 357
HaeII	RGCGCY	2 cut(s)	185, 916
HaeIII	GGCC	1 cut(s)	997
HapII	CCGG	4 cut(s)	149, 437, 782, 910
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	184, 915
Hin1I	GRCGYC	2 cut(s)	182, 913
Hin1II	CATG	5 cut(s)	67, 137, 759, 780, 887
Hin6I	GCGC	2 cut(s)	182, 913
HinP1I	GCGC	2 cut(s)	182, 913
HpaII	CCGG	4 cut(s)	149, 437, 782, 910
HphI	GGTGA	2 cut(s)	457, 539
Hpy188I	TCNGA	3 cut(s)	145, 409, 471
Hpy188III	TCNNGA	6 cut(s)	134, 190, 323, 334, 451, 985
Hpy99I	CGWCG	3 cut(s)	131, 222, 1024
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	4 cut(s)	52, 481, 643, 773
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	5 cut(s)	367, 664, 789, 806, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	629, 724, 786, 812
HpyF3I	CTNAG	6 cut(s)	72, 332, 408, 576, 702, 891
HpySE526I	ACGT	1 cut(s)	568
Hsp92I	GRCGYC	2 cut(s)	182, 913
Hsp92II	CATG	5 cut(s)	67, 137, 759, 780, 887
HspAI	GCGC	2 cut(s)	182, 913
KasI	GGCGCC	2 cut(s)	181, 912
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	8 cut(s)	75, 130, 145, 208, 447, 453, 583, 987
LmnI	GCTCC	1 cut(s)	887
Lsp1109I	GCAGC	2 cut(s)	328, 343
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	2 cut(s)	572, 1050
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	6 cut(s)	16, 527, 740, 750, 798, 829
MalI	GATC	8 cut(s)	77, 132, 147, 210, 449, 455, 585, 989
MboI	GATC	8 cut(s)	75, 130, 145, 208, 447, 453, 583, 987
Mly113I	GGCGCC	2 cut(s)	182, 913
MlyI	GAGTC	2 cut(s)	251, 652
MroXI	GAANNNNTTC	1 cut(s)	349
MseI	TTAA	1 cut(s)	1054
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	4 cut(s)	149, 437, 782, 910
MspR9I	CCNGG	3 cut(s)	438, 546, 782
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	4 cut(s)	629, 724, 786, 812
NarI	GGCGCC	2 cut(s)	182, 913
NciI	CCSGG	2 cut(s)	438, 782
NcoI	CCATGG	2 cut(s)	755, 883
NdeI	CATATG	1 cut(s)	36
NdeII	GATC	8 cut(s)	75, 130, 145, 208, 447, 453, 583, 987
NlaIII	CATG	5 cut(s)	67, 137, 759, 780, 887
NlaIV	GGNNCC	2 cut(s)	183, 914
NmuCI	GTSAC	2 cut(s)	527, 740
PagI	TCATGA	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	8 cut(s)	55, 137, 328, 404, 503, 824, 981, 1046
PfoI	TCCNGGA	2 cut(s)	436, 544
PkrI	GCNGC	2 cut(s)	318, 358
PleI	GAGTC	2 cut(s)	250, 652
PluTI	GGCGCC	2 cut(s)	185, 916
PpsI	GAGTC	2 cut(s)	250, 652
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	183, 914
PspPI	GGNCC	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	808
RsaI	GTAC	4 cut(s)	270, 415, 510, 724
RsaNI	GTAC	4 cut(s)	269, 414, 509, 723
SaqAI	TTAA	1 cut(s)	1054
SatI	GCNGC	2 cut(s)	317, 357
Sau3AI	GATC	8 cut(s)	75, 130, 145, 208, 447, 453, 583, 987
Sau96I	GGNCC	1 cut(s)	542
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	2 cut(s)	251, 652
ScrFI	CCNGG	3 cut(s)	438, 546, 782
SfaNI	GCATC	1 cut(s)	705
SfcI	CTRYAG	2 cut(s)	399, 804
SfoI	GGCGCC	2 cut(s)	183, 914
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
SsiI	CCGC	2 cut(s)	354, 978
SspDI	GGCGCC	2 cut(s)	181, 912
SspMI	CTAG	2 cut(s)	572, 1050
StyD4I	CCNGG	3 cut(s)	436, 544, 780
StyI	CCWWGG	2 cut(s)	755, 883
TaaI	ACNGT	4 cut(s)	52, 481, 643, 773
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	3 cut(s)	627, 651, 986
TaqII	GACCGA	1 cut(s)	290
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	8 cut(s)	55, 137, 328, 404, 503, 824, 981, 1046
Tru1I	TTAA	1 cut(s)	1054
Tru9I	TTAA	1 cut(s)	1054
TseFI	GTSAC	2 cut(s)	527, 740
TseI	GCWGC	2 cut(s)	316, 356
Tsp45I	GTSAC	2 cut(s)	527, 740
TspDTI	ATGAA	6 cut(s)	218, 300, 526, 725, 765, 825
TspGWI	ACGGA	1 cut(s)	987
VpaK11BI	GGWCC	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	2 cut(s)	572, 1050
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.