Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Forward (+)

4367181 .. 4369029

Gene Structure 1849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAAGATGCATCAGAGACTAGCTACTGGTGTCACATGTGCTCCCGATCGGTGATTCCATTGATTCAAGACGAAATCATCAAATGCAATTTCTGTCAAAGTGGTTTTGTTGAAGAAATGGATAATAATGATGACCATCAGGCTGCTGATTCTCTCTGGACTCCTATCTTGATGGAGATGATGAACAACAATCACGACCAACATTCTACCAATCAGGAAGACTCAGAATCTATTCTTGAAGATGAAGACGAAGACGAAGATGATGGTGATGATGGTGATCAGAACAATGATGGAGAAATTGATATAACTCATCAACTTGAAGAGATTAGGAGGATAAGGACTAGACATTCAACTGCTATTGTTAATCTGCTTCAGGGGATTCGAGCTGGATTATTGATCGAATCCGAGAACAACGAGGATAATCCCGATAATAGCGAGCTTGTCGTCTTGATCAACTCATTTAACCAAAGGATCAGGGTTCATCAAGATTCTGTAGACACCACTTCTGTTCCTTCTGGATCTTTGGGTGACTATTTCATTGGACCTGGATTCGAGACGTTGCTTCAGCGTTTGGCTGAGAATGATCTGAACAACAGGTATGGGACACCTCCAGCTACAAAAGAAGCGGTTGAGGCATTGGCGATGGTGAAAATCGAAGATAGTTTGTTGCAGTGTAGTGTGTGTTTGGATGATTTTGAGATTGGAATGGAGGCTAAAGAGATGCCGTGTAAGCATAAGTTTCATAGTGACTGCTTGTTGCCATGGCTTGAGCTTCATAGCTCATGCCCTGTTTGCAGATATCTGCTTCCTACAGGAGATGATGATGAGCCAAAGACTGATGCAGAAACATCGAGAAACGATGATAACAATGAAGATATCAGTAATGCTTCTATGGCTAGTAATGGATCATCACCAGACTCAAGTTCGAACAATTCATCGGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

315

Amino Acids

35.24

Weight (kDa)

4.11

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 40	8.8e-13	zinc-ribbon
zf-rbx1	PF12678	220 - 266	4.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	224 - 266	6.6e-14	Ring finger domain
zf-C3HC4_2	PF13923	224 - 265	4.2e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	224 - 252	1.6e-08	RING-like zinc finger
zf-C3HC4	PF00097	225 - 265	2.9e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	1 cut(s)	626
AclWI	GGATC	3 cut(s)	479, 526, 913
AcuI	CTGAAG	2 cut(s)	356, 548
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	5 cut(s)	68, 113, 239, 320, 351
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	6 cut(s)	24, 386, 439, 614, 772, 780
AluI	AGCT	6 cut(s)	24, 386, 439, 614, 772, 780
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	2 cut(s)	11, 548
AlwI	GGATC	3 cut(s)	479, 526, 913
ApeKI	GCWGC	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	6 cut(s)	64, 278, 287, 539, 658, 903
AsuII	TTCGAA	1 cut(s)	926
AvaII	GGWCC	1 cut(s)	542
BbsI	GAAGAC	3 cut(s)	225, 252, 258
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	6 cut(s)	144, 166, 257, 266, 284, 637
BceAI	ACGGC	1 cut(s)	709
BcgI	CGANNNNNNTGC	2 cut(s)	831, 865
BciT130I	CCWGG	1 cut(s)	546
BclI	TGATCA	2 cut(s)	277, 450
BcoDI	GTCTC	2 cut(s)	11, 548
BfaI	CTAG	3 cut(s)	21, 342, 897
BfmI	CTRYAG	2 cut(s)	492, 810
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	20, 711, 829
BpiI	GAAGAC	3 cut(s)	225, 252, 258
BpmI	CTGGAG	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	926
BpuEI	CTTGAG	2 cut(s)	788, 904
BsaBI	GATNNNNATC	2 cut(s)	135, 276
BsaJI	CCNNGG	1 cut(s)	761
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse1I	ACTGG	1 cut(s)	32
Bse8I	GATNNNNATC	2 cut(s)	135, 276
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	761
BseGI	GGATG	1 cut(s)	694
BseJI	GATNNNNATC	2 cut(s)	135, 276
BseMII	CTCAG	2 cut(s)	237, 567
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	616
BsmAI	GTCTC	2 cut(s)	11, 548
BsmBI	CGTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	616
Bsp119I	TTCGAA	1 cut(s)	926
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	8 cut(s)	47, 277, 396, 450, 471, 518, 583, 905
Bsp19I	CCATGG	1 cut(s)	761
BspACI	CCGC	1 cut(s)	626
BspCNI	CTCAG	2 cut(s)	236, 568
BspPI	GGATC	3 cut(s)	479, 526, 913
BspT104I	TTCGAA	1 cut(s)	926
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	761
BssMI	GATC	8 cut(s)	47, 277, 396, 450, 471, 518, 583, 905
BssT1I	CCWWGG	1 cut(s)	761
Bst2UI	CCWGG	1 cut(s)	546
Bst6I	CTCTTC	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	926
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	2 cut(s)	223, 576
BstDSI	CCRYGG	1 cut(s)	761
BstF5I	GGATG	1 cut(s)	694
BstKTI	GATC	8 cut(s)	50, 280, 399, 453, 474, 521, 586, 908
BstMAI	GTCTC	2 cut(s)	11, 548
BstMBI	GATC	8 cut(s)	47, 277, 396, 450, 471, 518, 583, 905
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	4 cut(s)	632, 730, 792, 893
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	2 cut(s)	492, 810
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	3 cut(s)	225, 252, 258
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BtgI	CCRYGG	1 cut(s)	761
BtgZI	GCGATG	1 cut(s)	656
BtsCI	GGATG	1 cut(s)	694
BtsI	GCAGTG	1 cut(s)	677
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	542
CviAII	CATG	3 cut(s)	37, 762, 783
DdeI	CTNAG	2 cut(s)	223, 576
DpnI	GATC	8 cut(s)	49, 279, 398, 452, 473, 520, 585, 907
DpnII	GATC	8 cut(s)	47, 277, 396, 450, 471, 518, 583, 905
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	761
Eco32I	GATATC	2 cut(s)	800, 877
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	356, 548
EcoRII	CCWGG	1 cut(s)	544
EcoRV	GATATC	2 cut(s)	800, 877
EcoT14I	CCWWGG	1 cut(s)	761
EcoT22I	ATGCAT	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	761
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	3 cut(s)	40, 765, 786
FaiI	YATR	9 cut(s)	38, 305, 600, 735, 744, 763, 777, 784, 893
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	3 cut(s)	36, 761, 782
FbaI	TGATCA	2 cut(s)	277, 450
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	701
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	3 cut(s)	21, 342, 897
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	594
Hin1II	CATG	3 cut(s)	40, 765, 786
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HpaI	GTTAAC	1 cut(s)	943
HphI	GGTGA	6 cut(s)	64, 278, 287, 539, 658, 903
Hpy166II	GTNNAC	2 cut(s)	496, 943
Hpy188I	TCNGA	5 cut(s)	16, 226, 282, 406, 588
Hpy8I	GTNNAC	2 cut(s)	496, 943
HpyAV	CCTTC	1 cut(s)	522
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	5 cut(s)	11, 87, 670, 795, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	632, 730, 792, 893
HpyF3I	CTNAG	2 cut(s)	223, 576
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	3 cut(s)	40, 765, 786
Ksp22I	TGATCA	2 cut(s)	277, 450
KspAI	GTTAAC	1 cut(s)	943
Kzo9I	GATC	8 cut(s)	47, 277, 396, 450, 471, 518, 583, 905
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	3 cut(s)	20, 711, 829
MaeI	CTAG	3 cut(s)	21, 342, 897
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	3 cut(s)	32, 527, 746
MalI	GATC	8 cut(s)	49, 279, 398, 452, 473, 520, 585, 907
MboI	GATC	8 cut(s)	47, 277, 396, 450, 471, 518, 583, 905
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	3 cut(s)	88, 297, 931
MlyI	GAGTC	3 cut(s)	154, 215, 911
MnlI	CCTC	5 cut(s)	324, 409, 618, 625, 703
Mph1103I	ATGCAT	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	363, 462, 942
MspR9I	CCNGG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	4 cut(s)	632, 730, 792, 893
NcoI	CCATGG	1 cut(s)	761
NdeII	GATC	8 cut(s)	47, 277, 396, 450, 471, 518, 583, 905
NlaIII	CATG	3 cut(s)	40, 765, 786
NmuCI	GTSAC	3 cut(s)	32, 527, 746
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	926
PciI	ACATGT	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	8 cut(s)	55, 64, 149, 227, 379, 401, 488, 549
PkrI	GCNGC	1 cut(s)	145
Ple19I	CGATCG	1 cut(s)	50
PleI	GAGTC	3 cut(s)	154, 215, 911
PpsI	GAGTC	3 cut(s)	154, 215, 911
PscI	ACATGT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	518
PvuI	CGATCG	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	363, 462, 942
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	8 cut(s)	47, 277, 396, 450, 471, 518, 583, 905
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	3 cut(s)	154, 215, 911
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	3 cut(s)	20, 711, 829
SfcI	CTRYAG	2 cut(s)	492, 810
SfuI	TTCGAA	1 cut(s)	926
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	767, 919
SmoI	CTYRAG	2 cut(s)	767, 919
Sse9I	AATT	3 cut(s)	88, 297, 931
SsiI	CCGC	1 cut(s)	626
SspMI	CTAG	3 cut(s)	21, 342, 897
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	761
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	6 cut(s)	382, 399, 552, 654, 851, 926
TasI	AATT	3 cut(s)	88, 297, 931
TfiI	GAWTC	8 cut(s)	55, 64, 149, 227, 379, 401, 488, 549
Tru1I	TTAA	3 cut(s)	363, 462, 942
Tru9I	TTAA	3 cut(s)	363, 462, 942
TscAI	CASTG	1 cut(s)	677
TseFI	GTSAC	3 cut(s)	32, 527, 746
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	3 cut(s)	32, 527, 746
TspDTI	ATGAA	8 cut(s)	197, 258, 470, 526, 731, 764, 885, 924
TspRI	CASTG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	542
XceI	RCATGY	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	3 cut(s)	21, 342, 897
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.