Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Forward (+)

22817480 .. 22819730

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAGGAAACAATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTAATGGAATCTGAGATCAAATGTCCCTTTTGCCAAAGCGGATTCATCGAAGAAATGAGCGGTAATGGCGGTGGAGGTGGTGGCAGAGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACAGACCGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGAAGACGAAGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGAATGATGATAATGGTGATGACTTGACTACTAATGCTGATGGGAATGGGAATGATAGTAACAACAGTAATAATAACGTGTATCGTCATCATCGAGCTAGGAGACATGGTGGAGAGATTGATTTAGATAGAGAGTTTGAATCTATCTTGAGGAGAAGACGAAGAAGCTCAGGGAATATATTGCAGTTGCTTCAAGGGATTCGTGCAGGGATTGCTTCTGAGTATGAAAGCTCTGATAACAATTGGGATAATTCTCGAGAGAGGGATAGAGTTATAATGATTAATCCGTATAACCAATCGCTAGTTGTTCCTTCGGATCAGAATCAGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCTGGTTTAGATCTTTTGCTTCAGCATTTGGCTGAGAATGATCCTAATAGGCAAGGGACTCCACCTGCTCGTAAAGAAGCTGTTGAAGCTTTACCAACGGTTAAGATAATGGAACCTTTGCAATGTTCTGTTTGTTTGGATGATTTTGAGAAAGGTACGGAAGCTAAAGAGATGCCTTGTAAGCATAAGTTTCATGTTCGGTGTATTGTTCCCTGGCTTGAGCTTCATAGTTCTTGTCCTGTGTGTCGTTTTGAGCTTCCTTCTAGTGCTGATGATGATGATGAGACTAAGACTGATTCCGAGAGAGTGCTGAGAACAAGAAATGTTCGGGAAACGAGTAACGGAAACGTTGTTGAGAATGTGGGAAATGCGGATAGAGGAAGAGAGGATGAGGTGAGGAGTGGAAATGGGAGACGGTTTTCGTTTCCATGGCCGTTTAGTGGATTGTTCTCGTCTTCTTCTTCTTCGTCTTCTTCAACCTCTGGATCTCAATCTGGTGAGAACAATTTCTTCTCAAGATCTTCTGGTTCTTCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

396

Amino Acids

44.36

Weight (kDa)

5.36

Isoelectric Point (pI)

69.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	1.7e-13	zinc-ribbon
zf-RING_2	PF13639	258 - 300	1.5e-13	Ring finger domain
zf-RING_11	PF17123	258 - 286	8.8e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	258 - 299	2.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	259 - 299	1.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	270 - 300	7.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
AarI	CACCTGC	1 cut(s)	724
Acc36I	ACCTGC	1 cut(s)	724
AccB1I	GGYRCC	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	4 cut(s)	99, 120, 129, 1022
AclI	AACGTT	1 cut(s)	999
AclWI	GGATC	3 cut(s)	606, 686, 1144
AcoI	YGGCCR	1 cut(s)	1082
AcuI	CTGAAG	1 cut(s)	656
AfaI	GTAC	1 cut(s)	808
AfiI	CCNNNNNNNGG	1 cut(s)	1091
AflIII	ACRYGT	2 cut(s)	36, 360
AgsI	TTSAA	5 cut(s)	164, 422, 476, 737, 1128
AjnI	CCWGG	2 cut(s)	652, 863
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	9 cut(s)	20, 380, 450, 513, 731, 740, 815, 874, 907
AluI	AGCT	9 cut(s)	20, 380, 450, 513, 731, 740, 815, 874, 907
Alw26I	GTCTC	4 cut(s)	207, 379, 929, 1057
AlwI	GGATC	3 cut(s)	606, 686, 1144
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	1 cut(s)	1082
ApeKI	GCWGC	1 cut(s)	17
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	1157
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	5 cut(s)	64, 290, 311, 1057, 1160
AvaI	CYCGRG	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	211
BbsI	GAAGAC	4 cut(s)	253, 445, 1098, 1113
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	1069
BciT130I	CCWGG	2 cut(s)	654, 865
BcoDI	GTCTC	4 cut(s)	207, 379, 929, 1057
BfaI	CTAG	4 cut(s)	21, 381, 584, 915
BfuAI	ACCTGC	1 cut(s)	724
BglII	AGATCT	2 cut(s)	661, 1169
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	654, 865
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	2 cut(s)	213, 765
BmrFI	CCNGG	2 cut(s)	654, 865
BmsI	GCATC	1 cut(s)	813
BpiI	GAAGAC	4 cut(s)	253, 445, 1098, 1113
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
Bpu10I	CCTNAGC	1 cut(s)	451
BpuEI	CTTGAG	3 cut(s)	451, 890, 1150
BsaBI	GATNNNNATC	2 cut(s)	603, 1141
BsaJI	CCNNGG	2 cut(s)	863, 1079
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	1091
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	779
Bse8I	GATNNNNATC	2 cut(s)	603, 1141
BseBI	CCWGG	2 cut(s)	654, 865
BseDI	CCNNGG	2 cut(s)	863, 1079
BseGI	GGATG	3 cut(s)	613, 796, 1045
BseJI	GATNNNNATC	2 cut(s)	603, 1141
BseLI	CCNNNNNNNGG	1 cut(s)	1091
BseMI	GCAATG	1 cut(s)	779
BseMII	CTCAG	5 cut(s)	63, 465, 492, 675, 953
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	448, 1063
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	1084
BshNI	GGYRCC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	537
BslFI	GGGAC	2 cut(s)	69, 721
BslI	CCNNNNNNNGG	1 cut(s)	1091
BsmAI	GTCTC	4 cut(s)	207, 379, 929, 1057
BsmBI	CGTCTC	1 cut(s)	1057
BsmFI	GGGAC	2 cut(s)	69, 721
BsnI	GGCC	1 cut(s)	1084
BsoBI	CYCGRG	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	7 cut(s)	75, 266, 598, 661, 691, 1136, 1169
Bsp19I	CCATGG	1 cut(s)	1079
BspACI	CCGC	4 cut(s)	99, 120, 129, 1022
BspANI	GGCC	1 cut(s)	1084
BspCNI	CTCAG	5 cut(s)	64, 464, 493, 676, 954
BspLI	GGNNCC	2 cut(s)	213, 765
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	3 cut(s)	606, 686, 1144
BspT107I	GGYRCC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	779
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	863, 1079
BssMI	GATC	7 cut(s)	75, 266, 598, 661, 691, 1136, 1169
BssT1I	CCWWGG	1 cut(s)	1079
Bst2UI	CCWGG	2 cut(s)	654, 865
Bst4CI	ACNGT	4 cut(s)	194, 350, 751, 1068
Bst6I	CTCTTC	2 cut(s)	276, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstDEI	CTNAG	6 cut(s)	72, 451, 501, 684, 939, 962
BstDSI	CCRYGG	1 cut(s)	1079
BstF5I	GGATG	3 cut(s)	613, 796, 1045
BstKTI	GATC	7 cut(s)	78, 269, 601, 664, 694, 1139, 1172
BstMAI	GTCTC	4 cut(s)	207, 379, 929, 1057
BstMBI	GATC	7 cut(s)	75, 266, 598, 661, 691, 1136, 1169
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 494, 737, 832
BstNI	CCWGG	2 cut(s)	654, 865
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	652, 863
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	4 cut(s)	253, 445, 1098, 1113
BstX2I	RGATCY	3 cut(s)	661, 1136, 1169
BstYI	RGATCY	3 cut(s)	661, 1136, 1169
BsuRI	GGCC	1 cut(s)	1084
BtgI	CCRYGG	1 cut(s)	1079
BtsCI	GGATG	3 cut(s)	613, 796, 1045
BveI	ACCTGC	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	650
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	807
CviAII	CATG	4 cut(s)	37, 389, 845, 1080
CviQI	GTAC	1 cut(s)	807
DdeI	CTNAG	6 cut(s)	72, 451, 501, 684, 939, 962
DpnI	GATC	7 cut(s)	77, 268, 600, 663, 693, 1138, 1171
DpnII	GATC	7 cut(s)	75, 266, 598, 661, 691, 1136, 1169
EaeI	YGGCCR	1 cut(s)	1082
Eam1104I	CTCTTC	2 cut(s)	276, 1027
EarI	CTCTTC	2 cut(s)	276, 1027
Eco130I	CCWWGG	1 cut(s)	1079
Eco47I	GGWCC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	652, 863
EcoT14I	CCWWGG	1 cut(s)	1079
ErhI	CCWWGG	1 cut(s)	1079
Esp3I	CGTCTC	1 cut(s)	1057
FaeI	CATG	4 cut(s)	40, 392, 848, 1083
FaqI	GGGAC	2 cut(s)	69, 721
FatI	CATG	4 cut(s)	36, 388, 844, 1079
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	3 cut(s)	600, 803, 1052
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	4 cut(s)	21, 381, 584, 915
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	1084
Hin1II	CATG	4 cut(s)	40, 392, 848, 1083
HindIII	AAGCTT	1 cut(s)	738
HphI	GGTGA	5 cut(s)	64, 290, 311, 1057, 1160
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	9 cut(s)	73, 172, 271, 502, 517, 598, 603, 609, 952
Hpy188III	TCNNGA	7 cut(s)	164, 430, 537, 539, 980, 1134, 1167
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	4 cut(s)	249, 603, 627, 921
HpyCH4III	ACNGT	4 cut(s)	194, 350, 751, 1068
HpyCH4IV	ACGT	2 cut(s)	360, 999
HpyCH4V	TGCA	4 cut(s)	197, 466, 488, 772
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 494, 737, 832
HpyF3I	CTNAG	6 cut(s)	72, 451, 501, 684, 939, 962
HpySE526I	ACGT	2 cut(s)	360, 999
Hsp92II	CATG	4 cut(s)	40, 392, 848, 1083
Kzo9I	GATC	7 cut(s)	75, 266, 598, 661, 691, 1136, 1169
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	813
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	4 cut(s)	21, 381, 584, 915
MaeII	ACGT	2 cut(s)	360, 999
MaeIII	GTNAC	3 cut(s)	32, 341, 989
MalI	GATC	7 cut(s)	77, 268, 600, 663, 693, 1138, 1171
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	7 cut(s)	75, 266, 598, 661, 691, 1136, 1169
MfeI	CAATTG	1 cut(s)	523
MflI	RGATCY	3 cut(s)	661, 1136, 1169
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	3 cut(s)	523, 532, 1156
MlyI	GAGTC	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	1157
MseI	TTAA	2 cut(s)	564, 753
MspR9I	CCNGG	2 cut(s)	654, 865
MunI	CAATTG	1 cut(s)	523
MvaI	CCWGG	2 cut(s)	654, 865
MwoI	GCNNNNNNNGC	4 cut(s)	126, 494, 737, 832
NcoI	CCATGG	1 cut(s)	1079
NdeII	GATC	7 cut(s)	75, 266, 598, 661, 691, 1136, 1169
NlaIII	CATG	4 cut(s)	40, 392, 848, 1083
NlaIV	GGNNCC	2 cut(s)	213, 765
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	537
PaqCI	CACCTGC	1 cut(s)	724
PciI	ACATGT	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	1157
PfeI	GAWTC	9 cut(s)	55, 68, 102, 167, 422, 481, 604, 610, 947
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
PscI	ACATGT	1 cut(s)	36
PshBI	ATTAAT	1 cut(s)	564
PsiI	TTATAA	1 cut(s)	557
Psp1406I	AACGTT	1 cut(s)	999
Psp6I	CCWGG	2 cut(s)	652, 863
PspGI	CCWGG	2 cut(s)	652, 863
PspN4I	GGNNCC	2 cut(s)	213, 765
PspPI	GGNCC	1 cut(s)	650
PsuI	RGATCY	3 cut(s)	661, 1136, 1169
RsaI	GTAC	1 cut(s)	808
RsaNI	GTAC	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	564, 753
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	7 cut(s)	75, 266, 598, 661, 691, 1136, 1169
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	654, 865
SduI	GDGCHC	1 cut(s)	214
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	1 cut(s)	813
Sfr274I	CTCGAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	537
SmlI	CTYRAG	4 cut(s)	430, 537, 869, 1165
SmoI	CTYRAG	4 cut(s)	430, 537, 869, 1165
Sse9I	AATT	3 cut(s)	523, 532, 1156
SsiI	CCGC	4 cut(s)	99, 120, 129, 1022
SspMI	CTAG	4 cut(s)	21, 381, 584, 915
StyD4I	CCNGG	2 cut(s)	652, 863
StyI	CCWWGG	1 cut(s)	1079
TaaI	ACNGT	4 cut(s)	194, 350, 751, 1068
TaiI	ACGT	2 cut(s)	363, 1002
TaqI	TCGA	4 cut(s)	108, 244, 376, 538
TasI	AATT	3 cut(s)	523, 532, 1156
TfiI	GAWTC	9 cut(s)	55, 68, 102, 167, 422, 481, 604, 610, 947
Tru1I	TTAA	2 cut(s)	564, 753
Tru9I	TTAA	2 cut(s)	564, 753
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	6 cut(s)	94, 522, 609, 634, 833, 866
TspGWI	ACGGA	3 cut(s)	558, 824, 1008
VpaK11BI	GGWCC	1 cut(s)	650
VspI	ATTAAT	1 cut(s)	564
XceI	RCATGY	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	1157
XspI	CTAG	4 cut(s)	21, 381, 584, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.