Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Reverse (-)

89633128 .. 89635884

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG566500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAGGAAGCAATGGCAGCTAGGTACTGGTGCTACAGGTGTTCTGAAATGGTGAACCCCGTCATGGGAGTTGAAATGAAATGCCCATTTTGCCAGAGCGGATTTATTGAGGAGATGGATGGCACCACTAGGGACAATCATGAACCCGACTCTGAATTTGGACCCGATCGACCTCTCTCCCTCTGGGCTCCAATCTTGATGGGGATGATGAACAACAATCCCCGTAGACGACGGAGATTGAGACGACATGAGTTCGATGAGGATGATGATGAGGATAATGAGAATGATGATGCCCATGGGGGAGAGACTGAACTGGACAGAGAACTTGAATCAATCATCCGAAGGAGGAGGAGAAGCTCATCTTCCATTCTTCAACTGCTTCGAGGCATTCGAGCTGCTGGCTTGGCATCTGAATCAGAGAATTCTGAGAGTGATAGGGACAGGGACAGGGACAGGGATAGGGATAGGGACAGAGAAAGGGAAAGGGAACGCCTAATTCTTATCAACCCTTTCAATCAAACCATCATTCTTCATGGTTCTTACGATTCAAGTCAGGGTCAAAACAACAATCACACTGCTATTGGTTCATTAGGTGATTACTTTATTGGCCCTGGTCTGGACTTATTGCTGCAACATTTGGCAGAGAATGATCCTAATAGATATGGAACTCCTCCGGCACAAAAGGAGGCAGTGGAAGCTCTGCCCACTGTGACAATTAAGGAGAATTTGCAATGTTCTGTGTGCTTGGATGATTTTAAGATTGGTGTTGAAGCAAAAGAAATGCCATGTAAGCATAAATTTCATGGTGACTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGCCCAGTTTGCAGGTTTCAGTTGCCTGCTGATGAAGCCAAACATGATTCCAATAATTCTAGAAACAGCAGTAACCAGAGGGATAGTGAGAACGCTGGCGGTGCTGGGGAAGAGGGAGATGAGGATGGGGATGGTATTGCGATTGAGAGAAATGGAAGTGGCAGAAGGTTTCAATTTCCGTGGCCTTTCAATATGTTTTCATCGACAGAATCTCAATCTAGTGGCAGTGGGGGTAATTCTTCCTCGTCAGCAAATGCAACTGGAAGCGGGAGTGGGAGTGGTTCGTCTCAAACAGATGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

382

Amino Acids

42.74

Weight (kDa)

4.79

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	3.5e-11	zinc-ribbon
zf-RING_2	PF13639	244 - 286	9.4e-14	Ring finger domain
zf-C3HC4_2	PF13923	244 - 285	1.5e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	244 - 272	3.3e-09	RING-like zinc finger
zf-C3HC4	PF00097	245 - 285	1.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	259 - 286	1.4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	846
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	3 cut(s)	99, 942, 1110
AclWI	GGATC	1 cut(s)	644
AcsI	RAATTY	4 cut(s)	155, 421, 724, 797
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	64, 65, 616
AgsI	TTSAA	8 cut(s)	74, 329, 374, 514, 549, 770, 1016, 1033
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	5 cut(s)	20, 357, 395, 698, 832
AluI	AGCT	5 cut(s)	20, 357, 395, 698, 832
Alw26I	GTCTC	3 cut(s)	235, 299, 1134
AlwI	GGATC	1 cut(s)	644
AoxI	GGCC	2 cut(s)	607, 1025
ApeKI	GCWGC	3 cut(s)	17, 395, 628
ApoI	RAATTY	4 cut(s)	155, 421, 724, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspS9I	GGNCC	2 cut(s)	161, 608
AsuHPI	GGTGA	3 cut(s)	64, 605, 818
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	29, 382, 615
BccI	CCATC	6 cut(s)	109, 113, 193, 530, 962, 968
BciT130I	CCWGG	1 cut(s)	612
BcoDI	GTCTC	3 cut(s)	235, 299, 1134
BfaI	CTAG	4 cut(s)	21, 129, 903, 1062
BfmI	CTRYAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	846
BisI	GCNGC	3 cut(s)	18, 396, 629
BlsI	GCNGC	3 cut(s)	19, 397, 630
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	161, 608
BmiI	GGNNCC	3 cut(s)	124, 163, 189
BmrFI	CCNGG	1 cut(s)	612
BmrI	ACTGGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	280, 416
BmuI	ACTGGG	1 cut(s)	842
BpmI	CTGGAG	1 cut(s)	848
BsaJI	CCNNGG	4 cut(s)	295, 610, 821, 1022
BsaXI	ACNNNNNCTCC	2 cut(s)	1105, 1135
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 65, 616
Bse1I	ACTGG	4 cut(s)	32, 318, 848, 1108
Bse3DI	GCAATG	2 cut(s)	18, 737
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	4 cut(s)	295, 610, 821, 1022
BseGI	GGATG	7 cut(s)	124, 210, 268, 336, 754, 973, 979
BseLI	CCNNNNNNNGG	3 cut(s)	64, 65, 616
BseMI	GCAATG	2 cut(s)	18, 737
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	4 cut(s)	32, 318, 848, 1108
BseRI	GAGGAG	4 cut(s)	125, 361, 364, 660
BseXI	GCAGC	3 cut(s)	29, 382, 615
BseYI	CCCAGC	1 cut(s)	947
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	609, 1027
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	5 cut(s)	146, 452, 458, 464, 482
BslI	CCNNNNNNNGG	3 cut(s)	64, 65, 616
BsmAI	GTCTC	3 cut(s)	235, 299, 1134
BsmBI	CGTCTC	2 cut(s)	235, 1134
BsmFI	GGGAC	5 cut(s)	146, 452, 458, 464, 482
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	609, 1027
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	166, 649
Bsp19I	CCATGG	2 cut(s)	295, 821
BspACI	CCGC	3 cut(s)	99, 942, 1110
BspANI	GGCC	2 cut(s)	609, 1027
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	124, 163, 189
BspMI	ACCTGC	1 cut(s)	846
BspPI	GGATC	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	2 cut(s)	18, 737
BsrI	ACTGG	4 cut(s)	32, 318, 848, 1108
BssECI	CCNNGG	4 cut(s)	295, 610, 821, 1022
BssMI	GATC	2 cut(s)	166, 649
BssT1I	CCWWGG	2 cut(s)	295, 821
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	709, 812
Bst6I	CTCTTC	1 cut(s)	948
BstC8I	GCNNGC	3 cut(s)	400, 870, 940
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	3 cut(s)	295, 821, 1022
BstF5I	GGATG	7 cut(s)	124, 210, 268, 336, 754, 973, 979
BstKTI	GATC	2 cut(s)	169, 652
BstMAI	GTCTC	3 cut(s)	235, 299, 1134
BstMBI	GATC	2 cut(s)	166, 649
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 90, 404, 695, 790, 852, 878, 944
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	1 cut(s)	34
BstV1I	GCAGC	3 cut(s)	29, 382, 615
BsuRI	GGCC	2 cut(s)	609, 1027
BtgI	CCRYGG	3 cut(s)	295, 821, 1022
BtsCI	GGATG	7 cut(s)	124, 210, 268, 336, 754, 973, 979
BtsI	GCAGTG	3 cut(s)	573, 696, 1075
BtsIMutI	CAGTG	4 cut(s)	573, 696, 705, 1075
BveI	ACCTGC	1 cut(s)	846
Cac8I	GCNNGC	3 cut(s)	400, 870, 940
CciI	TCATGA	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	161, 608
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	1004, 1039
CviAII	CATG	9 cut(s)	64, 140, 248, 296, 533, 786, 803, 822, 887
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	168, 651
DpnII	GATC	2 cut(s)	166, 649
Eam1104I	CTCTTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	948
Eco130I	CCWWGG	2 cut(s)	295, 821
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	2 cut(s)	295, 821
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	295, 821
Esp3I	CGTCTC	2 cut(s)	235, 1134
FaeI	CATG	9 cut(s)	67, 143, 251, 299, 536, 789, 806, 825, 890
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	5 cut(s)	146, 452, 458, 464, 482
FatI	CATG	9 cut(s)	63, 139, 247, 295, 532, 785, 802, 821, 886
FauI	CCCGC	1 cut(s)	1103
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	18, 396, 629
FokI	GGATG	7 cut(s)	131, 217, 275, 323, 761, 980, 986
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	18, 396, 629
FspBI	CTAG	4 cut(s)	21, 129, 903, 1062
GluI	GCNGC	3 cut(s)	18, 396, 629
GsaI	CCCAGC	1 cut(s)	951
GsuI	CTGGAG	1 cut(s)	848
HaeIII	GGCC	2 cut(s)	609, 1027
HapII	CCGG	1 cut(s)	674
Hin1II	CATG	9 cut(s)	67, 143, 251, 299, 536, 789, 806, 825, 890
HinfI	GANTC	6 cut(s)	149, 329, 413, 545, 890, 1052
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	3 cut(s)	64, 605, 818
Hpy166II	GTNNAC	2 cut(s)	55, 227
Hpy188I	TCNGA	6 cut(s)	46, 154, 341, 412, 418, 427
Hpy188III	TCNNGA	4 cut(s)	140, 196, 617, 903
Hpy8I	GTNNAC	2 cut(s)	55, 227
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	2 cut(s)	336, 1002
HpyCH4III	ACNGT	2 cut(s)	709, 812
HpyCH4V	TGCA	4 cut(s)	631, 730, 855, 1100
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 90, 404, 695, 790, 852, 878, 944
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	9 cut(s)	67, 143, 251, 299, 536, 789, 806, 825, 890
Kzo9I	GATC	2 cut(s)	166, 649
LmnI	GCTCC	2 cut(s)	193, 829
Lsp1109I	GCAGC	3 cut(s)	29, 382, 615
LweI	GCATC	2 cut(s)	280, 416
MaeI	CTAG	4 cut(s)	21, 129, 903, 1062
MaeIII	GTNAC	3 cut(s)	709, 806, 914
MalI	GATC	2 cut(s)	168, 651
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	2 cut(s)	166, 649
MboII	GAAGA	5 cut(s)	354, 362, 521, 965, 1074
MfeI	CAATTG	1 cut(s)	1144
MhlI	GDGCHC	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	717, 756
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	1 cut(s)	1144
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	8 cut(s)	17, 90, 404, 695, 790, 852, 878, 944
NcoI	CCATGG	2 cut(s)	295, 821
NdeII	GATC	2 cut(s)	166, 649
NlaIII	CATG	9 cut(s)	67, 143, 251, 299, 536, 789, 806, 825, 890
NlaIV	GGNNCC	3 cut(s)	124, 163, 189
NmuCI	GTSAC	2 cut(s)	709, 806
PagI	TCATGA	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	5 cut(s)	329, 413, 545, 890, 1052
PkrI	GCNGC	3 cut(s)	19, 397, 630
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	3 cut(s)	124, 163, 189
PspPI	GGNCC	2 cut(s)	161, 608
PvuI	CGATCG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	717, 756
SatI	GCNGC	3 cut(s)	18, 396, 629
Sau3AI	GATC	2 cut(s)	166, 649
Sau96I	GGNCC	2 cut(s)	161, 608
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	280, 416
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	1 cut(s)	161
SsiI	CCGC	3 cut(s)	99, 942, 1110
SspMI	CTAG	4 cut(s)	21, 129, 903, 1062
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	2 cut(s)	295, 821
TaaI	ACNGT	2 cut(s)	709, 812
TaqI	TCGA	5 cut(s)	169, 255, 382, 391, 1046
TfiI	GAWTC	5 cut(s)	329, 413, 545, 890, 1052
Tru1I	TTAA	2 cut(s)	717, 756
Tru9I	TTAA	2 cut(s)	717, 756
TscAI	CASTG	4 cut(s)	580, 696, 712, 1075
TseFI	GTSAC	2 cut(s)	709, 806
TseI	GCWGC	3 cut(s)	17, 395, 628
Tsp45I	GTSAC	2 cut(s)	709, 806
TspDTI	ATGAA	9 cut(s)	92, 156, 224, 521, 576, 791, 824, 891, 1032
TspGWI	ACGGA	2 cut(s)	247, 1011
TspRI	CASTG	4 cut(s)	580, 696, 712, 1075
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	4 cut(s)	155, 421, 724, 797
XbaI	TCTAGA	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	4 cut(s)	21, 129, 903, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.