Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Forward (+)

238371 .. 240722

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGGAAGCAAGGTATTGGTGTCACGTGTGTTCTCAAATGGTGGATCCCATCATGGAAGTAGAAATGAAATGCCCATTTTGCCAAAGCGGATTTATTGAGGAAATGAATAGCAACACGAGGGACAGTCATGAAGCTGACTCTGATTTTGGATCAGATCGAGCCCTCTCCCTCTGGGCACCAATCTTGCTGGGAATGATGAACAATCCCCATCGACGCCGAAGATTAAGACGACTAGACTTTGATGAGGATGAGGATGATGATAATGATGATGGCGAGGCCCGCCATGGCGGAGACACTGAATTGGACAGGGAACTTGAATCAATCATCCGAAGGAGGAGGAGAAACTCGGCTACTATTCTACAGCTGCTTCAAGGCATTCGAGCTGGCTCGGCATCTGAGTCTGAGAATTCTGAGAGTGATAGGGATAGGGATAGGGATAGGGATAGGGAGAGAGAAAGGGAAAGGGAAAGGGAACGAGTAATTCTGATCAATCCTTTCAGTCAAACCATCATTGTTCAGGGTTCTTATGATTCGAATCAGGGCCAAAACAACAATCACACTCCTATGGGTTCATTAGGCGATTATTTTATTGGGCCTGGTTTAGATTTATTGCTGCAACATTTGGCAGAGAATGATCCTAACAGATATGGGACTCCGCCAGCGCAAAAGGAGGCAGTGGAAGCTCTGCCCACTGTGACAATCAAGGAGAATTTGCAGTGTTCAGTGTGCTTGGATGATTTTGAGGCTGGTGTAGAAGCAAAAGAGATGCCATGTAAGCATAAATTCCATAGCGGGTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGTCCAGTATGCAGGTTTCAGTTGCCTGCTGATGAATCCAAACGCGATTCTGATAATTCTAGGAACAGCAGTGACCAAAGGGAGAGTGAAAACATAGGTGGTGATGGTGGTGGGGTGGAGGGAGATGGGGATGGGAGAAACGGAAGCGGAAGAAGGTTTTCAATTCCATGGCCTTTCAATGGTCTGTTTTCTAACTCAGGATCTCAATCTAGTGGCAGTGGGGGTAATTCTTCCTCAGCAGCAAATGCAACTGGAAGTGGAAGCGCTTCTCGAACAGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

373

Amino Acids

41.44

Weight (kDa)

4.77

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	834
AccB1I	GGYRCC	1 cut(s)	178
AccII	CGCG	1 cut(s)	876
AciI	CCGC	6 cut(s)	90, 283, 291, 659, 795, 978
AclWI	GGATC	5 cut(s)	41, 54, 160, 632, 1039
AcsI	RAATTY	3 cut(s)	409, 712, 785
AcvI	CACGTG	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	217
AfeI	AGCGCT	1 cut(s)	1096
AfiI	CCNNNNNNNGG	1 cut(s)	1010
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	320, 374, 993, 1009
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	5 cut(s)	137, 367, 386, 686, 820
AluI	AGCT	5 cut(s)	137, 367, 386, 686, 820
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	5 cut(s)	41, 54, 160, 632, 1039
Aor51HI	AGCGCT	1 cut(s)	1096
AoxI	GGCC	4 cut(s)	279, 544, 596, 1001
ApeKI	GCWGC	3 cut(s)	367, 616, 1070
ApoI	RAATTY	3 cut(s)	409, 712, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
Asp700I	GAANNNNTTC	2 cut(s)	988, 1096
AspLEI	GCGC	2 cut(s)	667, 1097
AspS9I	GGNCC	3 cut(s)	280, 544, 596
AsuHPI	GGTGA	1 cut(s)	944
AsuII	TTCGAA	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	118
BbrPI	CACGTG	1 cut(s)	28
BbvCI	CCTCAGC	1 cut(s)	1066
BbvI	GCAGC	3 cut(s)	354, 603, 1082
BccI	CCATC	7 cut(s)	59, 219, 266, 518, 929, 950, 956
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	3 cut(s)	236, 891, 1041
BfmI	CTRYAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	1098
BfuAI	ACCTGC	1 cut(s)	834
BisI	GCNGC	3 cut(s)	368, 617, 1071
BlsI	GCNGC	3 cut(s)	369, 618, 1072
Bme1390I	CCNGG	1 cut(s)	600
BmgT120I	GGNCC	3 cut(s)	280, 544, 596
BmiI	GGNNCC	2 cut(s)	48, 180
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	404, 759
BpmI	CTGGAG	1 cut(s)	836
Bpu10I	CCTNAGC	1 cut(s)	1066
Bpu14I	TTCGAA	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	28
BsaBI	GATNNNNATC	2 cut(s)	537, 1036
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	286, 809, 998
Bsc4I	CCNNNNNNNGG	1 cut(s)	1010
Bse1I	ACTGG	2 cut(s)	836, 1087
Bse8I	GATNNNNATC	2 cut(s)	537, 1036
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	286, 809, 998
BseGI	GGATG	5 cut(s)	256, 262, 327, 742, 967
BseJI	GATNNNNATC	2 cut(s)	537, 1036
BseLI	CCNNNNNNNGG	1 cut(s)	1010
BseMII	CTCAG	5 cut(s)	390, 396, 405, 1041, 1080
BseNI	ACTGG	2 cut(s)	836, 1087
BseRI	GAGGAG	2 cut(s)	352, 355
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	354, 603, 1082
BseYI	CCCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	876
BshFI	GGCC	4 cut(s)	281, 546, 598, 1003
BshNI	GGYRCC	1 cut(s)	178
BslFI	GGGAC	2 cut(s)	137, 667
BslI	CCNNNNNNNGG	1 cut(s)	1010
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	2 cut(s)	137, 667
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	4 cut(s)	281, 546, 598, 1003
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	166, 181
Bsp143I	GATC	6 cut(s)	46, 152, 157, 489, 637, 1031
Bsp19I	CCATGG	3 cut(s)	286, 809, 998
BspACI	CCGC	6 cut(s)	90, 283, 291, 659, 795, 978
BspANI	GGCC	4 cut(s)	281, 546, 598, 1003
BspCNI	CTCAG	5 cut(s)	391, 397, 406, 1040, 1079
BspFNI	CGCG	1 cut(s)	876
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	48, 180
BspMI	ACCTGC	1 cut(s)	834
BspPI	GGATC	5 cut(s)	41, 54, 160, 632, 1039
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	836, 1087
BssECI	CCNNGG	3 cut(s)	286, 809, 998
BssMI	GATC	6 cut(s)	46, 152, 157, 489, 637, 1031
BssNI	GRCGYC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	3 cut(s)	286, 809, 998
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	128, 697
BstACI	GRCGYC	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	1076
BstBAI	YACGTR	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	4 cut(s)	283, 388, 663, 858
BstDEI	CTNAG	5 cut(s)	399, 405, 414, 1027, 1066
BstDSI	CCRYGG	3 cut(s)	286, 809, 998
BstF5I	GGATG	5 cut(s)	256, 262, 327, 742, 967
BstFNI	CGCG	1 cut(s)	876
BstH2I	RGCGCY	1 cut(s)	1098
BstHHI	GCGC	2 cut(s)	667, 1097
BstKTI	GATC	6 cut(s)	49, 155, 160, 492, 640, 1034
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	6 cut(s)	46, 152, 157, 489, 637, 1031
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 282, 392, 683, 778, 1076
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	181
BstUI	CGCG	1 cut(s)	876
BstV1I	GCAGC	3 cut(s)	354, 603, 1082
BstX2I	RGATCY	2 cut(s)	46, 1031
BstYI	RGATCY	2 cut(s)	46, 1031
BsuRI	GGCC	4 cut(s)	281, 546, 598, 1003
BtgI	CCRYGG	3 cut(s)	286, 809, 998
BtsCI	GGATG	5 cut(s)	256, 262, 327, 742, 967
BtsI	GCAGTG	4 cut(s)	684, 725, 907, 1054
BtsIMutI	CAGTG	7 cut(s)	297, 684, 693, 725, 732, 907, 1054
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	4 cut(s)	283, 388, 663, 858
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	2 cut(s)	667, 1097
Cfr13I	GGNCC	3 cut(s)	280, 544, 596
CseI	GACGC	1 cut(s)	225
CviAII	CATG	6 cut(s)	55, 131, 287, 774, 810, 999
DdeI	CTNAG	5 cut(s)	399, 405, 414, 1027, 1066
DpnI	GATC	6 cut(s)	48, 154, 159, 491, 639, 1033
DpnII	GATC	6 cut(s)	46, 152, 157, 489, 637, 1031
EciI	GGCGGA	2 cut(s)	306, 648
Eco130I	CCWWGG	3 cut(s)	286, 809, 998
Eco24I	GRGCYC	1 cut(s)	166
Eco47III	AGCGCT	1 cut(s)	1096
Eco72I	CACGTG	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	3 cut(s)	286, 809, 998
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	3 cut(s)	286, 809, 998
FaeI	CATG	6 cut(s)	58, 134, 290, 777, 813, 1002
FaqI	GGGAC	2 cut(s)	137, 667
FatI	CATG	6 cut(s)	54, 130, 286, 773, 809, 998
FauI	CCCGC	2 cut(s)	290, 788
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	368, 617, 1071
FokI	GGATG	5 cut(s)	263, 269, 314, 749, 974
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	3 cut(s)	368, 617, 1071
FspBI	CTAG	3 cut(s)	236, 891, 1041
GlaI	GCGC	2 cut(s)	666, 1096
GluI	GCNGC	3 cut(s)	368, 617, 1071
GsaI	CCCAGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	836
HaeII	RGCGCY	1 cut(s)	1098
HaeIII	GGCC	4 cut(s)	281, 546, 598, 1003
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	2 cut(s)	667, 1097
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	6 cut(s)	58, 134, 290, 777, 813, 1002
Hin6I	GCGC	2 cut(s)	665, 1095
HinP1I	GCGC	2 cut(s)	665, 1095
HinfI	GANTC	8 cut(s)	140, 320, 401, 533, 538, 655, 866, 878
HphI	GGTGA	1 cut(s)	944
Hpy188I	TCNGA	8 cut(s)	145, 157, 332, 400, 406, 415, 489, 883
Hpy188III	TCNNGA	3 cut(s)	131, 1029, 1101
Hpy99I	CGWCG	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	327, 978
HpyCH4III	ACNGT	2 cut(s)	128, 697
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	619, 718, 843, 1079
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 282, 392, 683, 778, 1076
HpyF3I	CTNAG	5 cut(s)	399, 405, 414, 1027, 1066
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	6 cut(s)	58, 134, 290, 777, 813, 1002
HspAI	GCGC	2 cut(s)	665, 1095
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	46, 152, 157, 489, 637, 1031
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	3 cut(s)	354, 603, 1082
LweI	GCATC	2 cut(s)	404, 759
MaeI	CTAG	3 cut(s)	236, 891, 1041
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	23, 697, 902
MalI	GATC	6 cut(s)	48, 154, 159, 491, 639, 1033
MboI	GATC	6 cut(s)	46, 152, 157, 489, 637, 1031
MboII	GAAGA	3 cut(s)	234, 993, 1053
MflI	RGATCY	2 cut(s)	46, 1031
MhlI	GDGCHC	2 cut(s)	166, 181
MluCI	AATT	9 cut(s)	302, 409, 483, 712, 785, 886, 993, 1057, 1114
MlyI	GAGTC	3 cut(s)	134, 410, 649
MroXI	GAANNNNTTC	2 cut(s)	988, 1096
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	876
MwoI	GCNNNNNNNGC	6 cut(s)	81, 282, 392, 683, 778, 1076
NcoI	CCATGG	3 cut(s)	286, 809, 998
NdeII	GATC	6 cut(s)	46, 152, 157, 489, 637, 1031
NlaIII	CATG	6 cut(s)	58, 134, 290, 777, 813, 1002
NlaIV	GGNNCC	2 cut(s)	48, 180
NmeAIII	GCCGAG	2 cut(s)	329, 371
NmuCI	GTSAC	3 cut(s)	23, 697, 902
NspV	TTCGAA	1 cut(s)	536
PagI	TCATGA	1 cut(s)	130
PctI	GAATGC	1 cut(s)	378
PdmI	GAANNNNTTC	2 cut(s)	988, 1096
PfeI	GAWTC	5 cut(s)	320, 533, 538, 866, 878
PkrI	GCNGC	3 cut(s)	369, 618, 1072
PleI	GAGTC	3 cut(s)	134, 409, 649
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
PpsI	GAGTC	3 cut(s)	134, 409, 649
Ppu21I	YACGTR	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	598
PspCI	CACGTG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	48, 180
PspPI	GGNCC	3 cut(s)	280, 544, 596
PsuI	RGATCY	2 cut(s)	46, 1031
PvuII	CAGCTG	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	3 cut(s)	368, 617, 1071
Sau3AI	GATC	6 cut(s)	46, 152, 157, 489, 637, 1031
Sau96I	GGNCC	3 cut(s)	280, 544, 596
SchI	GAGTC	3 cut(s)	134, 410, 649
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	2 cut(s)	166, 181
SfaNI	GCATC	2 cut(s)	404, 759
SfcI	CTRYAG	1 cut(s)	362
SfuI	TTCGAA	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	566
Sse9I	AATT	9 cut(s)	302, 409, 483, 712, 785, 886, 993, 1057, 1114
SsiI	CCGC	6 cut(s)	90, 283, 291, 659, 795, 978
SspMI	CTAG	3 cut(s)	236, 891, 1041
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	3 cut(s)	286, 809, 998
TaaI	ACNGT	2 cut(s)	128, 697
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	5 cut(s)	160, 214, 382, 536, 1102
TasI	AATT	9 cut(s)	302, 409, 483, 712, 785, 886, 993, 1057, 1114
TfiI	GAWTC	5 cut(s)	320, 533, 538, 866, 878
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	7 cut(s)	304, 684, 700, 725, 732, 907, 1054
TseFI	GTSAC	3 cut(s)	23, 697, 902
TseI	GCWGC	3 cut(s)	367, 616, 1070
Tsp45I	GTSAC	3 cut(s)	23, 697, 902
TspDTI	ATGAA	7 cut(s)	83, 122, 147, 215, 564, 812, 879
TspGWI	ACGGA	1 cut(s)	987
TspRI	CASTG	7 cut(s)	304, 684, 700, 725, 732, 907, 1054
XapI	RAATTY	3 cut(s)	409, 712, 785
XmnI	GAANNNNTTC	2 cut(s)	988, 1096
XspI	CTAG	3 cut(s)	236, 891, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.