Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Forward (+)

126634 .. 128864

Gene Structure 2231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1001600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGACGAAGCAATGGCAGCAAGGTATTGGTGTCATAGGTGTTCTCGAATGGTGGATCCCATCATGGAAGTAGAAATGAAATGCCCCTTTTGCCAAAGCGGATTTATTGAGGAAATGAATGGCACTACAAGGGAGAATCAAGACGCTGACTCTGATTTGGGTTCCGATCGTGCCCTCTCCCTCTGGGCCCCAATCCTGTTGGGCATGATGAACAATCCCCATCGTCGCCGGAGATTAAGACGATTCGACTTTGATGACGATGATGATGATGACAATGACAATGACAATGATGATGGTGACACTCGCCAGGGCGGAGATACTGAATTGGACAGAGAACTTGAATCAATCATCCGGAGGAGGAGGAGAAGCTCAGCCACTATTCTACAGCTGCTTCAAGGCATTCGAGCTGGATTGGCATCTGAGTCTGAGAATTCTGAGGGGGATAGGGAGAGGGATAGGGAAAGAGAAAGGGAGAGGGAGCGCGTAATTCTTATAAATCCTTTCAGTCAAACCATCATTGTTCAGGGATCTTACGATTCGAATCAGGGTCAAAACAACAATCACACCCCTATTGGTTCATTGGGCGATTATTACATCGGGCCTGGTTTAGATTTGTTGCTGCAACATTTGGCAGAGAATGATCCTAATAGATATGGGACTCCACCAGCGCAAAAGGAGGCAGTGGAAGCTCTACCCACTGTGACAATCAAGGAGAATTTGCAGTGTTCAGTGTGCTTGGATGATTTTGAGGTCGGTATAGAAGCAAAAGAGATGCCATGTAAGCACAAGTTTCATAGCGGGTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGTCCAGTTTGCAGGTTCCAGTTGCCTGCTGATGAATCAAAGCGTGATTCAGATATTTCCAGGAACAGCAGTAACTCGAGGGAGAGTGAAGAGATTGGTGATGATGTTGGTGGGGAAGAGGGAGATGGGGATGGGAGAAACGGAAACGGGAGAAGGTTTTCAATCCCGTGGCCTTTCAATGGTCTGTTTTCTCACTCAGGATCTCAGTCAGGTGGCAGTGTGGGCAATTCATCATCATCATCATCATCATCATCGGCAAATGCAACCGGAAGTGGAAGCACTTCTCAAACAGAAGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

379

Amino Acids

42.02

Weight (kDa)

4.64

Isoelectric Point (pI)

61.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	4e-12	zinc-ribbon
zf-RING_2	PF13639	241 - 283	1.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	241 - 282	8.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	241 - 269	1.3e-08	RING-like zinc finger
zf-C3HC4	PF00097	242 - 282	3.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	255 - 283	1.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	837
AccII	CGCG	1 cut(s)	483
AccIII	TCCGGA	1 cut(s)	351
AciI	CCGC	3 cut(s)	99, 312, 798
AclWI	GGATC	5 cut(s)	50, 63, 535, 635, 1042
AcsI	RAATTY	2 cut(s)	430, 715
AfiI	CCNNNNNNNGG	1 cut(s)	1013
AgsI	TTSAA	4 cut(s)	341, 395, 996, 1012
AjnI	CCWGG	3 cut(s)	306, 601, 893
AluBI	AGCT	5 cut(s)	369, 388, 407, 689, 823
AluI	AGCT	5 cut(s)	369, 388, 407, 689, 823
AlwI	GGATC	5 cut(s)	50, 63, 535, 635, 1042
Ama87I	CYCGRG	1 cut(s)	910
Aor13HI	TCCGGA	1 cut(s)	351
AoxI	GGCC	3 cut(s)	186, 599, 1004
ApaI	GGGCCC	1 cut(s)	190
ApeKI	GCWGC	3 cut(s)	17, 388, 619
ApoI	RAATTY	2 cut(s)	430, 715
Asp700I	GAANNNNTTC	2 cut(s)	991, 1114
AspLEI	GCGC	2 cut(s)	483, 670
AspS9I	GGNCC	3 cut(s)	186, 187, 599
AsuHPI	GGTGA	2 cut(s)	308, 944
AsuII	TTCGAA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	910
BaeGI	GKGCMC	2 cut(s)	175, 190
BamHI	GGATCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	29, 375, 606
BccI	CCATC	6 cut(s)	68, 228, 287, 521, 953, 959
BciT130I	CCWGG	3 cut(s)	308, 603, 895
BfmI	CTRYAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	837
BisI	GCNGC	3 cut(s)	18, 389, 620
BlpI	GCTNAGC	1 cut(s)	370
BlsI	GCNGC	3 cut(s)	19, 390, 621
Bme1390I	CCNGG	3 cut(s)	308, 603, 895
BmeT110I	CYCGRG	1 cut(s)	910
BmgT120I	GGNCC	3 cut(s)	186, 187, 599
BmiI	GGNNCC	5 cut(s)	57, 163, 188, 189, 851
BmrFI	CCNGG	3 cut(s)	308, 603, 895
BmsI	GCATC	2 cut(s)	425, 762
BpmI	CTGGAG	1 cut(s)	839
Bpu1102I	GCTNAGC	1 cut(s)	370
Bpu14I	TTCGAA	1 cut(s)	539
BsaBI	GATNNNNATC	2 cut(s)	415, 540
BsaJI	CCNNGG	3 cut(s)	307, 812, 1001
BsaWI	WCCGGW	2 cut(s)	351, 1100
Bsc4I	CCNNNNNNNGG	1 cut(s)	1013
Bse1I	ACTGG	2 cut(s)	839, 853
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	2 cut(s)	415, 540
BseAI	TCCGGA	1 cut(s)	351
BseBI	CCWGG	3 cut(s)	308, 603, 895
BseDI	CCNNGG	3 cut(s)	307, 812, 1001
BseGI	GGATG	3 cut(s)	348, 745, 970
BseJI	GATNNNNATC	2 cut(s)	415, 540
BseLI	CCNNNNNNNGG	1 cut(s)	1013
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	6 cut(s)	384, 411, 417, 426, 1044, 1052
BseNI	ACTGG	2 cut(s)	839, 853
BseRI	GAGGAG	3 cut(s)	370, 373, 376
BseSI	GKGCMC	2 cut(s)	175, 190
BseXI	GCAGC	3 cut(s)	29, 375, 606
Bsh1236I	CGCG	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	188, 601, 1006
BsiEI	CGRYCG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	910
BsiSI	CCGG	3 cut(s)	229, 352, 1101
BslFI	GGGAC	1 cut(s)	670
BslI	CCNNNNNNNGG	1 cut(s)	1013
BsmFI	GGGAC	1 cut(s)	670
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	3 cut(s)	188, 601, 1006
BsoBI	CYCGRG	1 cut(s)	910
Bsp119I	TTCGAA	1 cut(s)	539
Bsp120I	GGGCCC	1 cut(s)	186
Bsp1286I	GDGCHC	2 cut(s)	175, 190
Bsp13I	TCCGGA	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	55, 166, 527, 640, 1034
Bsp1720I	GCTNAGC	1 cut(s)	370
Bsp19I	CCATGG	1 cut(s)	812
BspACI	CCGC	3 cut(s)	99, 312, 798
BspANI	GGCC	3 cut(s)	188, 601, 1006
BspCNI	CTCAG	6 cut(s)	383, 412, 418, 427, 1043, 1051
BspEI	TCCGGA	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	5 cut(s)	57, 163, 188, 189, 851
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	5 cut(s)	50, 63, 535, 635, 1042
BspT104I	TTCGAA	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	839, 853
BssECI	CCNNGG	3 cut(s)	307, 812, 1001
BssMI	GATC	5 cut(s)	55, 166, 527, 640, 1034
BssT1I	CCWWGG	1 cut(s)	812
Bst2UI	CCWGG	3 cut(s)	308, 603, 895
Bst4CI	ACNGT	1 cut(s)	700
Bst6I	CTCTTC	3 cut(s)	918, 945, 1122
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	861
BstDEI	CTNAG	6 cut(s)	370, 420, 426, 435, 1030, 1038
BstDSI	CCRYGG	2 cut(s)	812, 1001
BstF5I	GGATG	3 cut(s)	348, 745, 970
BstFNI	CGCG	1 cut(s)	483
BstHHI	GCGC	2 cut(s)	483, 670
BstKTI	GATC	5 cut(s)	58, 169, 530, 643, 1037
BstMBI	GATC	5 cut(s)	55, 166, 527, 640, 1034
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 90, 413, 686, 781, 1056
BstNI	CCWGG	3 cut(s)	308, 603, 895
BstSCI	CCNGG	3 cut(s)	306, 601, 893
BstSFI	CTRYAG	1 cut(s)	383
BstSLI	GKGCMC	2 cut(s)	175, 190
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	29, 375, 606
BstX2I	RGATCY	3 cut(s)	55, 527, 1034
BstYI	RGATCY	3 cut(s)	55, 527, 1034
BsuRI	GGCC	3 cut(s)	188, 601, 1006
BtgI	CCRYGG	2 cut(s)	812, 1001
BtsCI	GGATG	3 cut(s)	348, 745, 970
BtsI	GCAGTG	3 cut(s)	687, 728, 1057
BtsIMutI	CAGTG	5 cut(s)	687, 696, 728, 735, 1057
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	1 cut(s)	861
CfoI	GCGC	2 cut(s)	483, 670
Cfr13I	GGNCC	3 cut(s)	186, 187, 599
CseI	GACGC	1 cut(s)	152
CviAII	CATG	4 cut(s)	64, 205, 777, 813
DdeI	CTNAG	6 cut(s)	370, 420, 426, 435, 1030, 1038
DpnI	GATC	5 cut(s)	57, 168, 529, 642, 1036
DpnII	GATC	5 cut(s)	55, 166, 527, 640, 1034
Eam1104I	CTCTTC	3 cut(s)	918, 945, 1122
EarI	CTCTTC	3 cut(s)	918, 945, 1122
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	812
Eco24I	GRGCYC	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	910
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	3 cut(s)	306, 601, 893
EcoT14I	CCWWGG	1 cut(s)	812
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	812
FaeI	CATG	4 cut(s)	67, 208, 780, 816
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	4 cut(s)	63, 204, 776, 812
FauI	CCCGC	1 cut(s)	791
Fnu4HI	GCNGC	3 cut(s)	18, 389, 620
FokI	GGATG	3 cut(s)	335, 752, 977
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	18, 389, 620
GlaI	GCGC	2 cut(s)	482, 669
GluI	GCNGC	3 cut(s)	18, 389, 620
GsuI	CTGGAG	1 cut(s)	839
HaeIII	GGCC	3 cut(s)	188, 601, 1006
HapII	CCGG	3 cut(s)	229, 352, 1101
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	483, 670
Hin1II	CATG	4 cut(s)	67, 208, 780, 816
Hin6I	GCGC	2 cut(s)	481, 668
HinP1I	GCGC	2 cut(s)	481, 668
HpaII	CCGG	3 cut(s)	229, 352, 1101
HphI	GGTGA	2 cut(s)	308, 944
Hpy188I	TCNGA	6 cut(s)	154, 166, 421, 427, 436, 886
Hpy188III	TCNNGA	4 cut(s)	45, 140, 352, 1032
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	981
HpyCH4III	ACNGT	1 cut(s)	700
HpyCH4V	TGCA	4 cut(s)	622, 721, 846, 1097
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 90, 413, 686, 781, 1056
HpyF3I	CTNAG	6 cut(s)	370, 420, 426, 435, 1030, 1038
Hsp92II	CATG	4 cut(s)	67, 208, 780, 816
HspAI	GCGC	2 cut(s)	481, 668
Kpn2I	TCCGGA	1 cut(s)	351
Kzo9I	GATC	5 cut(s)	55, 166, 527, 640, 1034
LmnI	GCTCC	2 cut(s)	478, 820
Lsp1109I	GCAGC	3 cut(s)	29, 375, 606
LweI	GCATC	2 cut(s)	425, 762
MaeIII	GTNAC	3 cut(s)	296, 700, 905
MalI	GATC	5 cut(s)	57, 168, 529, 642, 1036
MboI	GATC	5 cut(s)	55, 166, 527, 640, 1034
MboII	GAAGA	2 cut(s)	935, 962
MflI	RGATCY	3 cut(s)	55, 527, 1034
MhlI	GDGCHC	2 cut(s)	175, 190
MluCI	AATT	6 cut(s)	323, 430, 486, 715, 1060, 1132
MlyI	GAGTC	3 cut(s)	143, 431, 652
MroI	TCCGGA	1 cut(s)	351
MroXI	GAANNNNTTC	2 cut(s)	991, 1114
MseI	TTAA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	3 cut(s)	229, 352, 1101
MspR9I	CCNGG	3 cut(s)	308, 603, 895
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	3 cut(s)	308, 603, 895
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	6 cut(s)	17, 90, 413, 686, 781, 1056
NcoI	CCATGG	1 cut(s)	812
NdeII	GATC	5 cut(s)	55, 166, 527, 640, 1034
NlaIII	CATG	4 cut(s)	67, 208, 780, 816
NlaIV	GGNNCC	5 cut(s)	57, 163, 188, 189, 851
NmuCI	GTSAC	2 cut(s)	296, 700
NspV	TTCGAA	1 cut(s)	539
PaeR7I	CTCGAG	1 cut(s)	910
PctI	GAATGC	1 cut(s)	399
PdmI	GAANNNNTTC	2 cut(s)	991, 1114
PfeI	GAWTC	7 cut(s)	136, 243, 341, 536, 541, 869, 881
PfoI	TCCNGGA	1 cut(s)	893
PkrI	GCNGC	3 cut(s)	19, 390, 621
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	3 cut(s)	143, 430, 652
PpsI	GAGTC	3 cut(s)	143, 430, 652
PsiI	TTATAA	1 cut(s)	494
Psp6I	CCWGG	3 cut(s)	306, 601, 893
PspGI	CCWGG	3 cut(s)	306, 601, 893
PspN4I	GGNNCC	5 cut(s)	57, 163, 188, 189, 851
PspOMI	GGGCCC	1 cut(s)	186
PspPI	GGNCC	3 cut(s)	186, 187, 599
PspXI	VCTCGAGB	1 cut(s)	910
PsuI	RGATCY	3 cut(s)	55, 527, 1034
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	3 cut(s)	18, 389, 620
Sau3AI	GATC	5 cut(s)	55, 166, 527, 640, 1034
Sau96I	GGNCC	3 cut(s)	186, 187, 599
SchI	GAGTC	3 cut(s)	143, 431, 652
ScrFI	CCNGG	3 cut(s)	308, 603, 895
SduI	GDGCHC	2 cut(s)	175, 190
SfaNI	GCATC	2 cut(s)	425, 762
SfcI	CTRYAG	1 cut(s)	383
Sfr274I	CTCGAG	1 cut(s)	910
SfuI	TTCGAA	1 cut(s)	539
SlaI	CTCGAG	1 cut(s)	910
SmlI	CTYRAG	1 cut(s)	910
SmoI	CTYRAG	1 cut(s)	910
Sse9I	AATT	6 cut(s)	323, 430, 486, 715, 1060, 1132
SsiI	CCGC	3 cut(s)	99, 312, 798
StyD4I	CCNGG	3 cut(s)	306, 601, 893
StyI	CCWWGG	1 cut(s)	812
TaaI	ACNGT	1 cut(s)	700
TaqI	TCGA	5 cut(s)	46, 246, 403, 539, 911
TasI	AATT	6 cut(s)	323, 430, 486, 715, 1060, 1132
TfiI	GAWTC	7 cut(s)	136, 243, 341, 536, 541, 869, 881
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	5 cut(s)	687, 703, 728, 735, 1057
TseFI	GTSAC	2 cut(s)	296, 700
TseI	GCWGC	3 cut(s)	17, 388, 619
Tsp45I	GTSAC	2 cut(s)	296, 700
TspDTI	ATGAA	8 cut(s)	92, 131, 224, 567, 782, 815, 882, 1053
TspGWI	ACGGA	1 cut(s)	990
TspRI	CASTG	5 cut(s)	687, 703, 728, 735, 1057
XapI	RAATTY	2 cut(s)	430, 715
XhoI	CTCGAG	1 cut(s)	910
XmnI	GAANNNNTTC	2 cut(s)	991, 1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.