Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Reverse (-)

88082577 .. 88083728

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAGGAAGCAATGGCAGCTAGGTACTGGTGCTACATGTGTTCTCAAATGGTGAACCCCGTCATGGGAGTCGAAATGAAATGCCCATTTTGTCAGAGCGGATTTATTGAGGAAATGGATGGCACCACAAGGGACAATCATGAACCCGACTCTGAATTTGGACCTGATCGACCTCTCTCCCTCTGGGCTCCAATCTTGATGGGGATGATGAACAATCCCCGTAGACGACGGCGATTGAGACGACAAGAGTTTGAAGAGGATGATGATGAGGATAATGAGAATGATGATGCCCATGGGGGAGACACTGACCTGGACAGAGAAAGGAGGAGGAGAAGCTCATCTTCCATTCTTCAACTGCTTCGAGGCATTCGAGCTGCTGGCTTGGCATCTGAATCAGAGAATTCTGAGAGTGATAGGGACAGGGACAGGGACAGGGACAGGGATAGATATTCGGACAGAGAAAGGGAACGGGAACGCCTAATTCTTATCAATCCTTTCAATCAGACCATCATTCTTCATGGTTCTTACGATTCAAGTCAGGGTCAAAACAACAATCACGCCGCTCTTGGTTCATTAGGTGATTATTTTGTTGGGCCTGGTCTGGACTTATTGCTGCAACATTTGGCAGAGAATGATCCTAATAGATATGGAACTCCTCCAGCACAAAAGGAGGCGGTGGAAGCTCTGCCCACTGTGACAATTAAGGAAAATTTGCAGTGTTCTGTGTGCTTGGATGATTTTAAGATTGGTGTTGAAGCAAAAGAAATGCCATGTAAGCATAAATTTCATGGTGACTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGCCCAGTTTGCAGGTTTCAGTTGCCTGCTGATGAAGCCAAACATGATTCCAATAATTCTAGAAACAGCAGTAACCAGAGGGATAGTGAGAATACTGGCGGTGCTGGTGAAGAGGGAGATGAGGATGGGGATGGGGATGGGGATGGGGATGGTATTGCGATTGGGAGAAATGGAAGTGGCAGAAGGTTTCAAATTCCGTGGCCTTTCAATCTGTTTTCATCGACAGAATCTCAATCTAGTGGCAGTGGGGGTAATTCTTCCTCATCAGCAAATGCAACTGGAAGCTGGAGTGGGAGTGGTTCGTCTCAAACAGATGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

384

Amino Acids

42.62

Weight (kDa)

4.67

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	7.9e-12	zinc-ribbon
zf-RING_2	PF13639	239 - 281	9.5e-14	Ring finger domain
zf-C3HC4_2	PF13923	239 - 280	1.5e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	239 - 267	3.3e-09	RING-like zinc finger
zf-C3HC4	PF00097	240 - 280	1.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	254 - 281	1.4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	831
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	2 cut(s)	99, 563
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	4 cut(s)	99, 561, 674, 927
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	5 cut(s)	155, 400, 709, 782, 1020
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	64, 65
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	7 cut(s)	254, 353, 499, 534, 755, 1019, 1036
AjnI	CCWGG	2 cut(s)	309, 595
AluBI	AGCT	6 cut(s)	20, 336, 374, 683, 817, 1113
AluI	AGCT	6 cut(s)	20, 336, 374, 683, 817, 1113
Alw26I	GTCTC	3 cut(s)	232, 294, 1137
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	2 cut(s)	593, 1028
ApeKI	GCWGC	3 cut(s)	17, 374, 613
ApoI	RAATTY	5 cut(s)	155, 400, 709, 782, 1020
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspS9I	GGNCC	2 cut(s)	161, 593
AsuHPI	GGTGA	4 cut(s)	64, 590, 803, 947
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	29, 361, 600
BccI	CCATC	8 cut(s)	113, 193, 515, 947, 953, 959, 965, 971
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	311, 597
BcoDI	GTCTC	3 cut(s)	232, 294, 1137
BfaI	CTAG	3 cut(s)	21, 888, 1065
BfuAI	ACCTGC	1 cut(s)	831
BisI	GCNGC	4 cut(s)	18, 375, 561, 614
BlsI	GCNGC	4 cut(s)	19, 376, 562, 615
Bme1390I	CCNGG	2 cut(s)	311, 597
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	161, 593
BmiI	GGNNCC	2 cut(s)	124, 189
BmrFI	CCNGG	2 cut(s)	311, 597
BmrI	ACTGGG	1 cut(s)	827
BmsI	GCATC	2 cut(s)	277, 395
BmuI	ACTGGG	1 cut(s)	827
BpmI	CTGGAG	3 cut(s)	642, 833, 1135
BsaJI	CCNNGG	3 cut(s)	292, 806, 1025
BsaXI	ACNNNNNCTCC	2 cut(s)	1108, 1138
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 65
Bse1I	ACTGG	4 cut(s)	32, 833, 928, 1111
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	311, 597
BseDI	CCNNGG	3 cut(s)	292, 806, 1025
BseGI	GGATG	9 cut(s)	124, 210, 265, 739, 958, 964, 970, 976, 982
BseLI	CCNNNNNNNGG	2 cut(s)	64, 65
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	4 cut(s)	32, 833, 928, 1111
BseRI	GAGGAG	3 cut(s)	340, 343, 645
BseXI	GCAGC	3 cut(s)	29, 361, 600
BshFI	GGCC	2 cut(s)	595, 1030
BshNI	GGYRCC	1 cut(s)	122
BslFI	GGGAC	5 cut(s)	146, 431, 437, 443, 449
BslI	CCNNNNNNNGG	2 cut(s)	64, 65
BsmAI	GTCTC	3 cut(s)	232, 294, 1137
BsmBI	CGTCTC	2 cut(s)	232, 1137
BsmFI	GGGAC	5 cut(s)	146, 431, 437, 443, 449
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	595, 1030
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	166, 634
Bsp19I	CCATGG	2 cut(s)	292, 806
BspACI	CCGC	4 cut(s)	99, 561, 674, 927
BspANI	GGCC	2 cut(s)	595, 1030
BspCNI	CTCAG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	124, 189
BspMI	ACCTGC	1 cut(s)	831
BspPI	GGATC	1 cut(s)	629
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	2 cut(s)	99, 563
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	4 cut(s)	32, 833, 928, 1111
BssECI	CCNNGG	3 cut(s)	292, 806, 1025
BssMI	GATC	2 cut(s)	166, 634
BssT1I	CCWWGG	2 cut(s)	292, 806
Bst2UI	CCWGG	2 cut(s)	311, 597
Bst4CI	ACNGT	2 cut(s)	694, 797
Bst6I	CTCTTC	2 cut(s)	249, 933
BstC8I	GCNNGC	2 cut(s)	379, 855
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	3 cut(s)	292, 806, 1025
BstF5I	GGATG	9 cut(s)	124, 210, 265, 739, 958, 964, 970, 976, 982
BstKTI	GATC	2 cut(s)	169, 637
BstMAI	GTCTC	3 cut(s)	232, 294, 1137
BstMBI	GATC	2 cut(s)	166, 634
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 383, 680, 775, 837, 863
BstNI	CCWGG	2 cut(s)	311, 597
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	309, 595
BstV1I	GCAGC	3 cut(s)	29, 361, 600
BsuRI	GGCC	2 cut(s)	595, 1030
BtgI	CCRYGG	3 cut(s)	292, 806, 1025
BtsCI	GGATG	9 cut(s)	124, 210, 265, 739, 958, 964, 970, 976, 982
BtsI	GCAGTG	2 cut(s)	722, 1078
BtsIMutI	CAGTG	4 cut(s)	303, 690, 722, 1078
BveI	ACCTGC	1 cut(s)	831
Cac8I	GCNNGC	2 cut(s)	379, 855
CciI	TCATGA	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	161, 593
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	1007, 1042
CviAII	CATG	9 cut(s)	37, 64, 140, 293, 518, 771, 788, 807, 872
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	2 cut(s)	168, 636
DpnII	GATC	2 cut(s)	166, 634
Eam1104I	CTCTTC	2 cut(s)	249, 933
EarI	CTCTTC	2 cut(s)	249, 933
Eco130I	CCWWGG	2 cut(s)	292, 806
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	309, 595
EcoT14I	CCWWGG	2 cut(s)	292, 806
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	292, 806
Esp3I	CGTCTC	2 cut(s)	232, 1137
FaeI	CATG	9 cut(s)	40, 67, 143, 296, 521, 774, 791, 810, 875
FalI	AAGNNNNNCTT	2 cut(s)	325, 357
FaqI	GGGAC	5 cut(s)	146, 431, 437, 443, 449
FatI	CATG	9 cut(s)	36, 63, 139, 292, 517, 770, 787, 806, 871
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	4 cut(s)	18, 375, 561, 614
FokI	GGATG	9 cut(s)	131, 217, 272, 746, 965, 971, 977, 983, 989
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	4 cut(s)	18, 375, 561, 614
FspBI	CTAG	3 cut(s)	21, 888, 1065
GluI	GCNGC	4 cut(s)	18, 375, 561, 614
GsuI	CTGGAG	3 cut(s)	642, 833, 1135
HaeIII	GGCC	2 cut(s)	595, 1030
Hin1II	CATG	9 cut(s)	40, 67, 143, 296, 521, 774, 791, 810, 875
HinfI	GANTC	6 cut(s)	69, 149, 392, 530, 875, 1055
HphI	GGTGA	4 cut(s)	64, 590, 803, 947
Hpy166II	GTNNAC	2 cut(s)	55, 224
Hpy188I	TCNGA	7 cut(s)	96, 154, 391, 397, 406, 454, 504
Hpy188III	TCNNGA	4 cut(s)	140, 196, 602, 888
Hpy8I	GTNNAC	2 cut(s)	55, 224
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	1005
HpyCH4III	ACNGT	2 cut(s)	694, 797
HpyCH4V	TGCA	4 cut(s)	616, 715, 840, 1103
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 383, 680, 775, 837, 863
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	9 cut(s)	40, 67, 143, 296, 521, 774, 791, 810, 875
Kzo9I	GATC	2 cut(s)	166, 634
LmnI	GCTCC	2 cut(s)	193, 814
Lsp1109I	GCAGC	3 cut(s)	29, 361, 600
LweI	GCATC	2 cut(s)	277, 395
MaeI	CTAG	3 cut(s)	21, 888, 1065
MaeIII	GTNAC	3 cut(s)	694, 791, 899
MalI	GATC	2 cut(s)	168, 636
MbiI	CCGCTC	2 cut(s)	99, 563
MboI	GATC	2 cut(s)	166, 634
MboII	GAAGA	6 cut(s)	266, 333, 341, 506, 950, 1077
MfeI	CAATTG	1 cut(s)	1147
MhlI	GDGCHC	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	78, 143
MseI	TTAA	2 cut(s)	702, 741
MspR9I	CCNGG	2 cut(s)	311, 597
MunI	CAATTG	1 cut(s)	1147
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	2 cut(s)	311, 597
MwoI	GCNNNNNNNGC	6 cut(s)	17, 383, 680, 775, 837, 863
NcoI	CCATGG	2 cut(s)	292, 806
NdeII	GATC	2 cut(s)	166, 634
NlaIII	CATG	9 cut(s)	40, 67, 143, 296, 521, 774, 791, 810, 875
NlaIV	GGNNCC	2 cut(s)	124, 189
NmuCI	GTSAC	2 cut(s)	694, 791
NspI	RCATGY	1 cut(s)	40
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	392, 530, 875, 1055
PkrI	GCNGC	4 cut(s)	19, 376, 562, 615
PleI	GAGTC	2 cut(s)	77, 143
PpsI	GAGTC	2 cut(s)	77, 143
PscI	ACATGT	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	309, 595
PspGI	CCWGG	2 cut(s)	309, 595
PspN4I	GGNNCC	2 cut(s)	124, 189
PspPI	GGNCC	2 cut(s)	161, 593
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	702, 741
SatI	GCNGC	4 cut(s)	18, 375, 561, 614
Sau3AI	GATC	2 cut(s)	166, 634
Sau96I	GGNCC	2 cut(s)	161, 593
SchI	GAGTC	2 cut(s)	78, 143
ScrFI	CCNGG	2 cut(s)	311, 597
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	277, 395
SinI	GGWCC	1 cut(s)	161
SsiI	CCGC	4 cut(s)	99, 561, 674, 927
SspMI	CTAG	3 cut(s)	21, 888, 1065
StyD4I	CCNGG	2 cut(s)	309, 595
StyI	CCWWGG	2 cut(s)	292, 806
TaaI	ACNGT	2 cut(s)	694, 797
TaqI	TCGA	5 cut(s)	72, 169, 361, 370, 1049
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	4 cut(s)	392, 530, 875, 1055
Tru1I	TTAA	2 cut(s)	702, 741
Tru9I	TTAA	2 cut(s)	702, 741
TscAI	CASTG	4 cut(s)	310, 697, 722, 1078
TseFI	GTSAC	2 cut(s)	694, 791
TseI	GCWGC	3 cut(s)	17, 374, 613
Tsp45I	GTSAC	2 cut(s)	694, 791
TspDTI	ATGAA	9 cut(s)	92, 156, 224, 506, 561, 776, 809, 876, 1035
TspGWI	ACGGA	1 cut(s)	1014
TspRI	CASTG	4 cut(s)	310, 697, 722, 1078
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	5 cut(s)	155, 400, 709, 782, 1020
XbaI	TCTAGA	1 cut(s)	887
XceI	RCATGY	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	3 cut(s)	21, 888, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.