Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Reverse (-)

38122014 .. 38124944

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45930.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGGAAGCAATAGCAGCTAGGTATTGGTGCCACATGTGTTCTCAGATGGTGAACCCCATCATGGGAGAAGAAATGAAATGCCCTTTTTGCCAAAGCGGATTTATTGAGGAAATGGATGGCACCCCAAGGGACAATCCTGAAGCCGACTCTGAATTTGGGCCTGATCGACCTCTCTCCCTCTGGGCTCCAATCTTGATGGGCATGATGAGCAATCCCCGCAGACGACGGAGATTGAGACGGCAAGAGTTTGATGAGGAGGAGGATGAGGATAATGAGAATGATGATGTCCATGGGGGAGACACTGAACTGGACAGAGAACTTGAATCAATCATCCGAAGGAGGAGGAGAAGCTCATCTACCATTCTTCAACTGCTTCGAGGCATTCGAGCAGCTGGCTTGGCATCTGAATCAGATAATTCTGAGACTGATAGGGACAGGGATAGGGATAGGGACAGAGAAAGGGAAAGGGAACGCCTAATTCTTATCAATCCTTTTAATCAAACCATCATTCTTCATGGTTCGTATGATTCAAGTCAGGGTCAAAACAACAATCACACCCCTATTGGTTCCTTAGGTGATTACTTCATTGGGCCTGGTCTGGACTTATTGCTGCAACATTTGGCGGAGAATGATCCTAATAGATATGGAACACCACCTGCAAAAAAGGAGGCAGTGGAAGGTCTGCCCACTGTGACAGTTAAGGAGAATTTACAGTGTTCTGTGTGCTTGGATGATTTGGAGATTGGGGTTGAGGCAAAAGAAATGCCATGTAAGCATAAATTTCATGGAGAGTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGCCCAGTATGCAGGTTTCTGTTGCCTGCTGATGAAGCCAAATGCGATTCCAATAATTCTAGGAACAGCAGTAACCAGAGTGATGGCGAGAACATTGACGGTGATGGGGAAGAGGGAGATGTGGATGGGGATGGGATTGGGAGAAATGGAAGTGGCAGAAGGTTTCAAATTCCATGGCCCTTCAATCTGTTTTCATCCACAGAATCTCAAACTAGTGGCAGCGGGGGTAATTCTTCGTCATCAGCAAATGCAACTGGAAGTGGGAATGGGAGTGCTTCGTCTCAACCAGATGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

376

Amino Acids

41.7

Weight (kDa)

4.63

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	1.3e-12	zinc-ribbon
zf-RING_2	PF13639	239 - 281	1.4e-13	Ring finger domain
zf-C3HC4_2	PF13923	239 - 280	1.5e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	239 - 267	2e-08	RING-like zinc finger
zf-C3HC4	PF00097	240 - 280	2.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	252 - 281	8.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	667
Acc36I	ACCTGC	2 cut(s)	667, 831
AccB1I	GGYRCC	2 cut(s)	30, 122
AciI	CCGC	4 cut(s)	99, 220, 626, 1050
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	4 cut(s)	155, 709, 782, 996
AcuI	CTGAAG	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	64, 65
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	5 cut(s)	326, 371, 534, 995, 1012
AhlI	ACTAGT	1 cut(s)	1040
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	4 cut(s)	20, 354, 395, 817
AluI	AGCT	4 cut(s)	20, 354, 395, 817
Alw26I	GTCTC	4 cut(s)	232, 294, 419, 1113
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	3 cut(s)	161, 593, 1004
ApeKI	GCWGC	4 cut(s)	17, 392, 613, 1047
ApoI	RAATTY	4 cut(s)	155, 709, 782, 996
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspS9I	GGNCC	3 cut(s)	161, 593, 1005
AsuHPI	GGTGA	3 cut(s)	64, 590, 941
AxyI	CCTNAGG	1 cut(s)	574
BanI	GGYRCC	2 cut(s)	30, 122
BanII	GRGCYC	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BbvI	GCAGC	4 cut(s)	29, 404, 600, 1059
BccI	CCATC	9 cut(s)	43, 68, 113, 193, 515, 905, 926, 947, 953
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	597
BcoDI	GTCTC	4 cut(s)	232, 294, 419, 1113
BcuI	ACTAGT	1 cut(s)	1040
BfaI	CTAG	3 cut(s)	21, 888, 1041
BfuAI	ACCTGC	2 cut(s)	667, 831
BisI	GCNGC	4 cut(s)	18, 393, 614, 1048
BlsI	GCNGC	4 cut(s)	19, 394, 615, 1049
Bme1390I	CCNGG	1 cut(s)	597
BmgT120I	GGNCC	3 cut(s)	161, 593, 1005
BmiI	GGNNCC	4 cut(s)	32, 124, 189, 571
BmrFI	CCNGG	1 cut(s)	597
BmrI	ACTGGG	1 cut(s)	827
BmsI	GCATC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	827
BpmI	CTGGAG	1 cut(s)	833
BsaJI	CCNNGG	4 cut(s)	128, 292, 806, 1001
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 65
Bse1I	ACTGG	3 cut(s)	315, 833, 1087
Bse21I	CCTNAGG	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	4 cut(s)	128, 292, 806, 1001
BseGI	GGATG	7 cut(s)	124, 271, 333, 739, 958, 964, 1022
BseLI	CCNNNNNNNGG	2 cut(s)	64, 65
BseMII	CTCAG	2 cut(s)	59, 414
BseNI	ACTGG	3 cut(s)	315, 833, 1087
BseRI	GAGGAG	4 cut(s)	272, 275, 358, 361
BseXI	GCAGC	4 cut(s)	29, 404, 600, 1059
BshFI	GGCC	3 cut(s)	163, 595, 1006
BshNI	GGYRCC	2 cut(s)	30, 122
BslFI	GGGAC	3 cut(s)	146, 449, 467
BslI	CCNNNNNNNGG	2 cut(s)	64, 65
BsmAI	GTCTC	4 cut(s)	232, 294, 419, 1113
BsmBI	CGTCTC	2 cut(s)	232, 1113
BsmFI	GGGAC	3 cut(s)	146, 449, 467
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	3 cut(s)	163, 595, 1006
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	166, 634
Bsp19I	CCATGG	3 cut(s)	292, 806, 1001
BspACI	CCGC	4 cut(s)	99, 220, 626, 1050
BspANI	GGCC	3 cut(s)	163, 595, 1006
BspCNI	CTCAG	2 cut(s)	58, 415
BspLI	GGNNCC	4 cut(s)	32, 124, 189, 571
BspMI	ACCTGC	2 cut(s)	667, 831
BspPI	GGATC	1 cut(s)	629
BspT107I	GGYRCC	2 cut(s)	30, 122
BsrI	ACTGG	3 cut(s)	315, 833, 1087
BssECI	CCNNGG	4 cut(s)	128, 292, 806, 1001
BssMI	GATC	2 cut(s)	166, 634
BssT1I	CCWWGG	4 cut(s)	128, 292, 806, 1001
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	4 cut(s)	694, 700, 717, 929
Bst6I	CTCTTC	1 cut(s)	933
BstC8I	GCNNGC	2 cut(s)	397, 855
BstDEI	CTNAG	3 cut(s)	45, 423, 574
BstDSI	CCRYGG	3 cut(s)	292, 806, 1001
BstF5I	GGATG	7 cut(s)	124, 271, 333, 739, 958, 964, 1022
BstKTI	GATC	2 cut(s)	169, 637
BstMAI	GTCTC	4 cut(s)	232, 294, 419, 1113
BstMBI	GATC	2 cut(s)	166, 634
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 90, 210, 219, 401, 775, 837, 863
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	595
BstV1I	GCAGC	4 cut(s)	29, 404, 600, 1059
BstXI	CCANNNNNNTGG	1 cut(s)	911
Bsu36I	CCTNAGG	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	163, 595, 1006
BtgI	CCRYGG	3 cut(s)	292, 806, 1001
BtsCI	GGATG	7 cut(s)	124, 271, 333, 739, 958, 964, 1022
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	4 cut(s)	303, 681, 690, 722
BveI	ACCTGC	2 cut(s)	667, 831
Cac8I	GCNNGC	2 cut(s)	397, 855
Cfr13I	GGNCC	3 cut(s)	161, 593, 1005
CviAII	CATG	9 cut(s)	37, 64, 205, 293, 518, 771, 788, 807, 1002
DdeI	CTNAG	3 cut(s)	45, 423, 574
DpnI	GATC	2 cut(s)	168, 636
DpnII	GATC	2 cut(s)	166, 634
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
EciI	GGCGGA	1 cut(s)	641
Eco130I	CCWWGG	4 cut(s)	128, 292, 806, 1001
Eco24I	GRGCYC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	595
EcoT14I	CCWWGG	4 cut(s)	128, 292, 806, 1001
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	4 cut(s)	128, 292, 806, 1001
Esp3I	CGTCTC	2 cut(s)	232, 1113
FaeI	CATG	9 cut(s)	40, 67, 208, 296, 521, 774, 791, 810, 1005
FaqI	GGGAC	3 cut(s)	146, 449, 467
FatI	CATG	9 cut(s)	36, 63, 204, 292, 517, 770, 787, 806, 1001
FauI	CCCGC	2 cut(s)	227, 1043
Fnu4HI	GCNGC	4 cut(s)	18, 393, 614, 1048
FokI	GGATG	7 cut(s)	131, 278, 320, 746, 965, 971, 1009
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	4 cut(s)	18, 393, 614, 1048
FspBI	CTAG	3 cut(s)	21, 888, 1041
GluI	GCNGC	4 cut(s)	18, 393, 614, 1048
GsuI	CTGGAG	1 cut(s)	833
HaeIII	GGCC	3 cut(s)	163, 595, 1006
Hin1II	CATG	9 cut(s)	40, 67, 208, 296, 521, 774, 791, 810, 1005
HinfI	GANTC	6 cut(s)	149, 326, 410, 530, 875, 1031
HphI	GGTGA	3 cut(s)	64, 590, 941
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	6 cut(s)	48, 154, 338, 409, 415, 424
Hpy188III	TCNNGA	3 cut(s)	140, 196, 602
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	4 cut(s)	333, 674, 981, 1018
HpyCH4III	ACNGT	4 cut(s)	694, 700, 717, 929
HpyCH4V	TGCA	4 cut(s)	616, 662, 840, 1079
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 90, 210, 219, 401, 775, 837, 863
HpyF3I	CTNAG	3 cut(s)	45, 423, 574
Hsp92II	CATG	9 cut(s)	40, 67, 208, 296, 521, 774, 791, 810, 1005
Kzo9I	GATC	2 cut(s)	166, 634
LmnI	GCTCC	2 cut(s)	193, 814
Lsp1109I	GCAGC	4 cut(s)	29, 404, 600, 1059
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	3 cut(s)	21, 888, 1041
MaeIII	GTNAC	2 cut(s)	694, 899
MalI	GATC	2 cut(s)	168, 636
MboI	GATC	2 cut(s)	166, 634
MboII	GAAGA	5 cut(s)	83, 359, 506, 950, 1053
MfeI	CAATTG	1 cut(s)	1123
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	9 cut(s)	155, 418, 480, 709, 782, 883, 996, 1057, 1123
MlyI	GAGTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	498, 702
MspA1I	CMGCKG	2 cut(s)	395, 1050
MspR9I	CCNGG	1 cut(s)	597
MunI	CAATTG	1 cut(s)	1123
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	8 cut(s)	17, 90, 210, 219, 401, 775, 837, 863
NcoI	CCATGG	3 cut(s)	292, 806, 1001
NdeII	GATC	2 cut(s)	166, 634
NlaIII	CATG	9 cut(s)	40, 67, 208, 296, 521, 774, 791, 810, 1005
NlaIV	GGNNCC	4 cut(s)	32, 124, 189, 571
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	1 cut(s)	40
PaqCI	CACCTGC	1 cut(s)	667
PciI	ACATGT	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PctI	GAATGC	1 cut(s)	384
PfeI	GAWTC	5 cut(s)	326, 410, 530, 875, 1031
PkrI	GCNGC	4 cut(s)	19, 394, 615, 1049
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PscI	ACATGT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	4 cut(s)	32, 124, 189, 571
PspPI	GGNCC	3 cut(s)	161, 593, 1005
PvuII	CAGCTG	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	498, 702
SatI	GCNGC	4 cut(s)	18, 393, 614, 1048
Sau3AI	GATC	2 cut(s)	166, 634
Sau96I	GGNCC	3 cut(s)	161, 593, 1005
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	1 cut(s)	413
SpeI	ACTAGT	1 cut(s)	1040
Sse9I	AATT	9 cut(s)	155, 418, 480, 709, 782, 883, 996, 1057, 1123
SsiI	CCGC	4 cut(s)	99, 220, 626, 1050
SspMI	CTAG	3 cut(s)	21, 888, 1041
StyD4I	CCNGG	1 cut(s)	595
StyI	CCWWGG	4 cut(s)	128, 292, 806, 1001
TaaI	ACNGT	4 cut(s)	694, 700, 717, 929
TaqI	TCGA	3 cut(s)	169, 379, 388
TasI	AATT	9 cut(s)	155, 418, 480, 709, 782, 883, 996, 1057, 1123
TfiI	GAWTC	5 cut(s)	326, 410, 530, 875, 1031
Tru1I	TTAA	2 cut(s)	498, 702
Tru9I	TTAA	2 cut(s)	498, 702
TscAI	CASTG	4 cut(s)	310, 681, 697, 722
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	4 cut(s)	17, 392, 613, 1047
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	7 cut(s)	92, 506, 577, 776, 809, 876, 1011
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	4 cut(s)	310, 681, 697, 722
XapI	RAATTY	4 cut(s)	155, 709, 782, 996
XceI	RCATGY	1 cut(s)	40
XspI	CTAG	3 cut(s)	21, 888, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.