Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Forward (+)

146333 .. 147472

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAGGACGCAATTGCAGCAAGGTATTGGTGCCACATGTGTTCTCAAATGGTGAATCCCATCATGGAAATAGAAATGAAATGCCCCTTTTGCCAAAGCGGATTTATTGAGGAAATGAATGGCACTACGAGGGATAATCAAGAGGCTGACTCTGATTTTGGATCCGATCGAGCACTCTCCCTCTGGGCTCCGATCTTGCTTGGCATGATGAACAATCCCCGTCGTCGTAGAAGATTAAGACGACTAGACTTTGATGAAGATGATGATGATGACAATGACAATGATGATGGTGAGACTCGCCAGGGCAGAGACACTGAATTGGACAGAGAACTTGAATCAATCATCCGAAGGAGGAGGAGAAGCTCAGCTTCTTTTCTACAGCTGCTTCAAGGCATTCGAGCTGGCTTGGCATCTGAATCTGAGAATTCTGAGGGTGATAGGGATAGGGATAGAGGGAGAGAAAGAGAACGGGAGAGGGAGCGTGTAATTCTTATCAATCCTTTCAATCAAACCATCATTGTTCAGGGATCTTACGATTCGAATCAGGGTCAAATCAACAATCACACCCCTATCAGTTCATTAGGCGATTATTTCATTGGGCCTGGTTTGGATTTGTTGCTGCAACATTTGGCAGAGAATGATCCTAATAGGTATGGGACTCCGCCAGCACAAAAGGAGGCAGTGGAAGCGCTGCCCGCTGTGACAATCAAGGAGAATATGCAGTGTTCAGTGTGCTTGGATGATTTTGAGGTTGGTGTAGAAGCCAAAGAGATGCCATGTAAGCATAAGTTTCATAGCGGGTGTATTCTGCCATGGTTGGACCTTCATAGTTCCTGTCCGGTTTGCAGGTTCCAGTTGCCTACTGATGAATCAAAGCGTGATTCAGATATTTCCAGGACCAGCAGTAACTCGAGGGAGAGTGAAGAGATTGGCGATGTTGGTGGTGGTGGTGGTGGGGAAGAGGGAGATGGGGATGGGGATGGGAGAAATGGAAACGGGAGAAGGTTTTCAATTCCGTGGCCTTTCAGTAGTCTGTTTTCTCACTCAGGATCTCAGTCGGGTGGCAGTGGGGGAAATTCATCGTCAGCAGCAGCGAATGCAACTGGAAGTGGAAGTGCTTCTCAAACAGAAGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

380

Amino Acids

41.95

Weight (kDa)

4.69

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	5.4e-12	zinc-ribbon
zf-RING_2	PF13639	241 - 283	1.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	241 - 282	7.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	241 - 269	6.4e-09	RING-like zinc finger
zf-C3HC4	PF00097	242 - 282	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	253 - 283	1.9e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	30
AciI	CCGC	4 cut(s)	99, 662, 696, 798
AclWI	GGATC	5 cut(s)	156, 169, 535, 635, 1057
AcsI	RAATTY	2 cut(s)	424, 1075
AfeI	AGCGCT	1 cut(s)	690
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	4 cut(s)	335, 389, 505, 1011
AjnI	CCWGG	3 cut(s)	300, 601, 893
AluBI	AGCT	4 cut(s)	363, 368, 382, 401
AluI	AGCT	4 cut(s)	363, 368, 382, 401
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	287, 303
AlwI	GGATC	5 cut(s)	156, 169, 535, 635, 1057
Ama87I	CYCGRG	1 cut(s)	910
Aor51HI	AGCGCT	1 cut(s)	690
AoxI	GGCC	2 cut(s)	599, 1019
ApeKI	GCWGC	6 cut(s)	17, 382, 619, 691, 1088, 1091
ApoI	RAATTY	2 cut(s)	424, 1075
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	2 cut(s)	1006, 1117
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	3 cut(s)	599, 820, 897
AsuHPI	GGTGA	3 cut(s)	64, 302, 446
AsuII	TTCGAA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	910
AvaII	GGWCC	2 cut(s)	820, 897
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	6 cut(s)	29, 369, 606, 678, 1100, 1103
BccI	CCATC	6 cut(s)	68, 281, 521, 962, 968, 974
BciT130I	CCWGG	3 cut(s)	302, 603, 895
BcoDI	GTCTC	2 cut(s)	287, 303
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	377
BfoI	RGCGCY	1 cut(s)	692
BfuAI	ACCTGC	1 cut(s)	837
BisI	GCNGC	6 cut(s)	18, 383, 620, 692, 1089, 1092
BlpI	GCTNAGC	1 cut(s)	364
BlsI	GCNGC	6 cut(s)	19, 384, 621, 693, 1090, 1093
Bme1390I	CCNGG	3 cut(s)	302, 603, 895
Bme18I	GGWCC	2 cut(s)	820, 897
BmeT110I	CYCGRG	1 cut(s)	910
BmgT120I	GGNCC	3 cut(s)	599, 820, 897
BmiI	GGNNCC	4 cut(s)	32, 163, 189, 851
BmrFI	CCNGG	3 cut(s)	302, 603, 895
BmsI	GCATC	2 cut(s)	419, 762
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
Bpu1102I	GCTNAGC	1 cut(s)	364
Bpu14I	TTCGAA	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	3 cut(s)	301, 812, 1016
BsaWI	WCCGGW	1 cut(s)	838
Bse1I	ACTGG	2 cut(s)	853, 1108
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	3 cut(s)	302, 603, 895
BseDI	CCNNGG	3 cut(s)	301, 812, 1016
BseGI	GGATG	4 cut(s)	342, 745, 979, 985
BseJI	GATNNNNATC	1 cut(s)	540
BseMII	CTCAG	5 cut(s)	378, 411, 420, 1059, 1067
BseNI	ACTGG	2 cut(s)	853, 1108
BseRI	GAGGAG	2 cut(s)	367, 370
BseXI	GCAGC	6 cut(s)	29, 369, 606, 678, 1100, 1103
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	601, 1021
BshNI	GGYRCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	910
BsiSI	CCGG	1 cut(s)	839
BslFI	GGGAC	1 cut(s)	670
BsmAI	GTCTC	2 cut(s)	287, 303
BsmFI	GGGAC	1 cut(s)	670
BsmI	GAATGC	2 cut(s)	393, 1102
BsnI	GGCC	2 cut(s)	601, 1021
BsoBI	CYCGRG	1 cut(s)	910
Bsp119I	TTCGAA	1 cut(s)	539
Bsp1286I	GDGCHC	2 cut(s)	175, 190
Bsp143I	GATC	6 cut(s)	161, 166, 192, 527, 640, 1049
Bsp1720I	GCTNAGC	1 cut(s)	364
Bsp19I	CCATGG	1 cut(s)	812
BspACI	CCGC	4 cut(s)	99, 662, 696, 798
BspANI	GGCC	2 cut(s)	601, 1021
BspCNI	CTCAG	5 cut(s)	377, 412, 421, 1058, 1066
BspLI	GGNNCC	4 cut(s)	32, 163, 189, 851
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	5 cut(s)	156, 169, 535, 635, 1057
BspT104I	TTCGAA	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	853, 1108
BssECI	CCNNGG	3 cut(s)	301, 812, 1016
BssMI	GATC	6 cut(s)	161, 166, 192, 527, 640, 1049
BssT1I	CCWWGG	1 cut(s)	812
Bst2UI	CCWGG	3 cut(s)	302, 603, 895
Bst6I	CTCTTC	3 cut(s)	918, 954, 1125
BstAPI	GCANNNNNTGC	1 cut(s)	1097
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	403, 666, 696
BstDEI	CTNAG	5 cut(s)	364, 420, 429, 1045, 1053
BstDSI	CCRYGG	2 cut(s)	812, 1016
BstF5I	GGATG	4 cut(s)	342, 745, 979, 985
BstH2I	RGCGCY	1 cut(s)	692
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	6 cut(s)	164, 169, 195, 530, 643, 1052
BstMAI	GTCTC	2 cut(s)	287, 303
BstMBI	GATC	6 cut(s)	161, 166, 192, 527, 640, 1049
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 90, 407, 686, 695, 781, 1097
BstNI	CCWGG	3 cut(s)	302, 603, 895
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	3 cut(s)	300, 601, 893
BstSFI	CTRYAG	1 cut(s)	377
BstV1I	GCAGC	6 cut(s)	29, 369, 606, 678, 1100, 1103
BstX2I	RGATCY	3 cut(s)	161, 527, 1049
BstYI	RGATCY	3 cut(s)	161, 527, 1049
BsuRI	GGCC	2 cut(s)	601, 1021
BtgI	CCRYGG	2 cut(s)	812, 1016
BtgZI	GCGATG	1 cut(s)	948
BtsCI	GGATG	4 cut(s)	342, 745, 979, 985
BtsI	GCAGTG	3 cut(s)	687, 728, 1072
BtsIMutI	CAGTG	5 cut(s)	312, 687, 728, 735, 1072
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	3 cut(s)	403, 666, 696
CfoI	GCGC	1 cut(s)	691
Cfr13I	GGNCC	3 cut(s)	599, 820, 897
CseI	GACGC	1 cut(s)	17
CviAII	CATG	5 cut(s)	37, 64, 205, 777, 813
DdeI	CTNAG	5 cut(s)	364, 420, 429, 1045, 1053
DpnI	GATC	6 cut(s)	163, 168, 194, 529, 642, 1051
DpnII	GATC	6 cut(s)	161, 166, 192, 527, 640, 1049
Eam1104I	CTCTTC	3 cut(s)	918, 954, 1125
EarI	CTCTTC	3 cut(s)	918, 954, 1125
EciI	GGCGGA	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	812
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	820, 897
Eco47III	AGCGCT	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	910
EcoRI	GAATTC	1 cut(s)	424
EcoRII	CCWGG	3 cut(s)	300, 601, 893
EcoT14I	CCWWGG	1 cut(s)	812
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	812
FaeI	CATG	5 cut(s)	40, 67, 208, 780, 816
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	5 cut(s)	36, 63, 204, 776, 812
FauI	CCCGC	2 cut(s)	703, 791
Fnu4HI	GCNGC	6 cut(s)	18, 383, 620, 692, 1089, 1092
FokI	GGATG	4 cut(s)	329, 752, 986, 992
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	6 cut(s)	18, 383, 620, 692, 1089, 1092
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	6 cut(s)	18, 383, 620, 692, 1089, 1092
HaeII	RGCGCY	1 cut(s)	692
HaeIII	GGCC	2 cut(s)	601, 1021
HapII	CCGG	1 cut(s)	839
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	5 cut(s)	40, 67, 208, 780, 816
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	3 cut(s)	64, 302, 446
Hpy188I	TCNGA	8 cut(s)	154, 166, 192, 347, 415, 421, 430, 886
Hpy188III	TCNNGA	2 cut(s)	140, 1047
Hpy99I	CGWCG	2 cut(s)	225, 228
HpyAV	CCTTC	3 cut(s)	342, 833, 996
HpyCH4V	TGCA	5 cut(s)	17, 622, 721, 846, 1100
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 90, 407, 686, 695, 781, 1097
HpyF3I	CTNAG	5 cut(s)	364, 420, 429, 1045, 1053
Hsp92II	CATG	5 cut(s)	40, 67, 208, 780, 816
HspAI	GCGC	1 cut(s)	689
Kzo9I	GATC	6 cut(s)	161, 166, 192, 527, 640, 1049
LmnI	GCTCC	2 cut(s)	193, 478
Lsp1109I	GCAGC	6 cut(s)	29, 369, 606, 678, 1100, 1103
LweI	GCATC	2 cut(s)	419, 762
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	700, 905
MalI	GATC	6 cut(s)	163, 168, 194, 529, 642, 1051
MboI	GATC	6 cut(s)	161, 166, 192, 527, 640, 1049
MboII	GAAGA	4 cut(s)	243, 269, 935, 971
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	3 cut(s)	161, 527, 1049
MhlI	GDGCHC	2 cut(s)	175, 190
MluCI	AATT	7 cut(s)	12, 317, 424, 486, 1011, 1075, 1135
MlyI	GAGTC	3 cut(s)	143, 289, 652
MmeI	TCCRAC	1 cut(s)	798
MroXI	GAANNNNTTC	2 cut(s)	1006, 1117
MseI	TTAA	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	382, 698
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	3 cut(s)	302, 603, 895
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	2 cut(s)	393, 1102
MvaI	CCWGG	3 cut(s)	302, 603, 895
MwoI	GCNNNNNNNGC	7 cut(s)	17, 90, 407, 686, 695, 781, 1097
NcoI	CCATGG	1 cut(s)	812
NdeII	GATC	6 cut(s)	161, 166, 192, 527, 640, 1049
NlaIII	CATG	5 cut(s)	40, 67, 208, 780, 816
NlaIV	GGNNCC	4 cut(s)	32, 163, 189, 851
NmuCI	GTSAC	1 cut(s)	700
NspI	RCATGY	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	539
PaeR7I	CTCGAG	1 cut(s)	910
PciI	ACATGT	1 cut(s)	36
PctI	GAATGC	2 cut(s)	393, 1102
PdmI	GAANNNNTTC	2 cut(s)	1006, 1117
PfeI	GAWTC	7 cut(s)	55, 335, 416, 536, 541, 869, 881
PfoI	TCCNGGA	1 cut(s)	893
PkrI	GCNGC	6 cut(s)	19, 384, 621, 693, 1090, 1093
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	3 cut(s)	143, 289, 652
PpsI	GAGTC	3 cut(s)	143, 289, 652
PscI	ACATGT	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	300, 601, 893
PspGI	CCWGG	3 cut(s)	300, 601, 893
PspN4I	GGNNCC	4 cut(s)	32, 163, 189, 851
PspPI	GGNCC	3 cut(s)	599, 820, 897
PspXI	VCTCGAGB	1 cut(s)	910
PsuI	RGATCY	3 cut(s)	161, 527, 1049
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	6 cut(s)	18, 383, 620, 692, 1089, 1092
Sau3AI	GATC	6 cut(s)	161, 166, 192, 527, 640, 1049
Sau96I	GGNCC	3 cut(s)	599, 820, 897
SchI	GAGTC	3 cut(s)	143, 289, 652
ScrFI	CCNGG	3 cut(s)	302, 603, 895
SduI	GDGCHC	2 cut(s)	175, 190
SfaNI	GCATC	2 cut(s)	419, 762
SfcI	CTRYAG	1 cut(s)	377
Sfr274I	CTCGAG	1 cut(s)	910
SfuI	TTCGAA	1 cut(s)	539
SinI	GGWCC	2 cut(s)	820, 897
SlaI	CTCGAG	1 cut(s)	910
SmlI	CTYRAG	1 cut(s)	910
SmoI	CTYRAG	1 cut(s)	910
Sse9I	AATT	7 cut(s)	12, 317, 424, 486, 1011, 1075, 1135
SsiI	CCGC	4 cut(s)	99, 662, 696, 798
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	300, 601, 893
StyI	CCWWGG	1 cut(s)	812
TaqI	TCGA	4 cut(s)	169, 397, 539, 911
TasI	AATT	7 cut(s)	12, 317, 424, 486, 1011, 1075, 1135
TfiI	GAWTC	7 cut(s)	55, 335, 416, 536, 541, 869, 881
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	5 cut(s)	319, 687, 728, 735, 1072
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	6 cut(s)	17, 382, 619, 691, 1088, 1091
Tsp45I	GTSAC	1 cut(s)	700
TspGWI	ACGGA	1 cut(s)	1005
TspRI	CASTG	5 cut(s)	319, 687, 728, 735, 1072
VpaK11BI	GGWCC	2 cut(s)	820, 897
XapI	RAATTY	2 cut(s)	424, 1075
XceI	RCATGY	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	910
XmnI	GAANNNNTTC	2 cut(s)	1006, 1117
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.