Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Reverse (-)

86884814 .. 86887730

Gene Structure 2917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G050330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAGGAAGCAATGGCAGCTAGGTACTGGTGCTACAGGTGTTCTGAAATGGTGAACCCCGTCATGGGAGTTGAAATGAAATGCCCATTTTGCCAGAGCGGATTTATTGAGGAGATGGATGGCACCACTAGGGACAATCATGAACCCGACTCTGAATTTGGACCCGATCGACCTCTCTCCCTCTGGGCTCCAATCTTGATGGGGATGATGAACAACAATCCCCGTAGACGACGGAGATTGAGACGACAAGAGTTCGATGAGGATGATGATGAGGATAATGAGAATGATGATGCCCATGGGGGAGAGACTGAACTGGACAGAGAACTTGAATCAATCATCCGAAGGAGGAGGAGAAGCTCATCTTCCATTCTTCAACTGCTTCGAGGCATTCGAGCTGCTGGCTTGGCATCTGAATCAGACAATTCTGAGAGTGATAGGGACAGGGACAGGGACAGGGATAGGGACAGAGAAAGGGAAAGGGAACGCCTAATTCTTATCAACCCTTTCAATCAAACCATCATTCTTCATGGTTCTTACGATTCAAGTCAGGGTCAAAACAACAATCACACTGCTATTGGTTCATTAGGTGATTACTTTATTGGCCCTGGTCTGGACTTATTGCTGCAACATTTGGCAGAGAATGATCCTAATAGATATGGAACTCCTCCGGCACAAAAGGAGGCAGTGGAAGCTCTGCCCACTGTGACAATTAAGGAGAATTTGCAATGTTCTGTGTGCTTGGATGATTTTAAGATTGGTGTTGAAGCAAAAGAAATGCCATGTAAGCATAAATTTCATGGTGACTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGCCCAGTTTGCAGGTTTCAGTTGCCTGCTGATGAAGCCAAACATGATTCCAATAATTCTAGAAACAGCAGTAACCAGAGGGATAGTGAGAACGCTGGCGGTGCTGGGGAAGAGGGAGATGAGGATGGGGATGGTATTGCGATTGAGAGAAATGGAGTGGCAGAAGGTTTCAATTTCCGTGGCCTTTCAATCTGTTTTCATCGACAGAATCTCAATCTAGTGGCAGTGGGGGTAATTCTTCCTCGTCAGCAAATGCAACTGGAAGCGGGAGTGGGAGTGGTTCGTCTCAAACAGATGACAATTGAATTCGAATATATGGAATCTGTTCCTCCTATCCTTCATACATATTGGGTTCTTGTTCATTATGTGGCTTCAATGGTCTGCTGCGCTGCTACCTGTGTACATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

415

Amino Acids

46.97

Weight (kDa)

4.94

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	3.9e-11	zinc-ribbon
zf-RING_2	PF13639	242 - 284	1.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	242 - 283	1.7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	242 - 270	3.7e-09	RING-like zinc finger
zf-C3HC4	PF00097	243 - 283	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	257 - 284	1.5e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	3 cut(s)	99, 936, 1103
AclWI	GGATC	1 cut(s)	638
AcsI	RAATTY	4 cut(s)	155, 718, 791, 1142
AfaI	GTAC	2 cut(s)	26, 1239
AfiI	CCNNNNNNNGG	3 cut(s)	64, 65, 610
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	5 cut(s)	20, 357, 395, 692, 826
AluI	AGCT	5 cut(s)	20, 357, 395, 692, 826
Alw26I	GTCTC	3 cut(s)	235, 299, 1127
AlwI	GGATC	1 cut(s)	638
AoxI	GGCC	2 cut(s)	601, 1018
ApeKI	GCWGC	5 cut(s)	17, 395, 622, 1221, 1226
ApoI	RAATTY	4 cut(s)	155, 718, 791, 1142
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	1 cut(s)	1161
AspLEI	GCGC	1 cut(s)	1226
AspS9I	GGNCC	2 cut(s)	161, 602
AsuHPI	GGTGA	3 cut(s)	64, 599, 812
AsuII	TTCGAA	1 cut(s)	1146
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	5 cut(s)	29, 382, 609, 1208, 1213
BccI	CCATC	6 cut(s)	109, 113, 193, 524, 956, 962
BciT130I	CCWGG	1 cut(s)	606
BcoDI	GTCTC	3 cut(s)	235, 299, 1127
BfaI	CTAG	4 cut(s)	21, 129, 897, 1055
BfmI	CTRYAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	840
BisI	GCNGC	5 cut(s)	18, 396, 623, 1222, 1227
BlsI	GCNGC	5 cut(s)	19, 397, 624, 1223, 1228
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	161, 602
BmiI	GGNNCC	3 cut(s)	124, 163, 189
BmrFI	CCNGG	1 cut(s)	606
BmrI	ACTGGG	1 cut(s)	836
BmsI	GCATC	2 cut(s)	280, 416
BmuI	ACTGGG	1 cut(s)	836
BpmI	CTGGAG	1 cut(s)	842
Bpu14I	TTCGAA	1 cut(s)	1146
BsaJI	CCNNGG	4 cut(s)	295, 604, 815, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	1098, 1128
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 65, 610
Bse1I	ACTGG	4 cut(s)	32, 318, 842, 1101
Bse3DI	GCAATG	2 cut(s)	18, 731
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	4 cut(s)	295, 604, 815, 1015
BseGI	GGATG	7 cut(s)	124, 210, 268, 336, 748, 967, 973
BseLI	CCNNNNNNNGG	3 cut(s)	64, 65, 610
BseMI	GCAATG	2 cut(s)	18, 731
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	4 cut(s)	32, 318, 842, 1101
BseRI	GAGGAG	4 cut(s)	125, 361, 364, 654
BseXI	GCAGC	5 cut(s)	29, 382, 609, 1208, 1213
BseYI	CCCAGC	1 cut(s)	941
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	603, 1020
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	668
BslFI	GGGAC	5 cut(s)	146, 452, 458, 464, 476
BslI	CCNNNNNNNGG	3 cut(s)	64, 65, 610
BsmAI	GTCTC	3 cut(s)	235, 299, 1127
BsmBI	CGTCTC	2 cut(s)	235, 1127
BsmFI	GGGAC	5 cut(s)	146, 452, 458, 464, 476
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	603, 1020
Bsp119I	TTCGAA	1 cut(s)	1146
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	1237
Bsp143I	GATC	2 cut(s)	166, 643
Bsp19I	CCATGG	2 cut(s)	295, 815
BspACI	CCGC	3 cut(s)	99, 936, 1103
BspANI	GGCC	2 cut(s)	603, 1020
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	124, 163, 189
BspMI	ACCTGC	1 cut(s)	840
BspPI	GGATC	1 cut(s)	638
BspT104I	TTCGAA	1 cut(s)	1146
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	2 cut(s)	18, 731
BsrGI	TGTACA	1 cut(s)	1237
BsrI	ACTGG	4 cut(s)	32, 318, 842, 1101
BssECI	CCNNGG	4 cut(s)	295, 604, 815, 1015
BssMI	GATC	2 cut(s)	166, 643
BssT1I	CCWWGG	2 cut(s)	295, 815
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	703, 806
Bst6I	CTCTTC	1 cut(s)	942
BstAUI	TGTACA	1 cut(s)	1237
BstBI	TTCGAA	1 cut(s)	1146
BstC8I	GCNNGC	3 cut(s)	400, 864, 934
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	3 cut(s)	295, 815, 1015
BstF5I	GGATG	7 cut(s)	124, 210, 268, 336, 748, 967, 973
BstHHI	GCGC	1 cut(s)	1226
BstKTI	GATC	2 cut(s)	169, 646
BstMAI	GTCTC	3 cut(s)	235, 299, 1127
BstMBI	GATC	2 cut(s)	166, 643
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 90, 404, 689, 784, 846, 872, 938
BstNI	CCWGG	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	34
BstV1I	GCAGC	5 cut(s)	29, 382, 609, 1208, 1213
BsuRI	GGCC	2 cut(s)	603, 1020
BtgI	CCRYGG	3 cut(s)	295, 815, 1015
BtsCI	GGATG	7 cut(s)	124, 210, 268, 336, 748, 967, 973
BtsI	GCAGTG	3 cut(s)	567, 690, 1068
BtsIMutI	CAGTG	4 cut(s)	567, 690, 699, 1068
BveI	ACCTGC	1 cut(s)	840
Cac8I	GCNNGC	3 cut(s)	400, 864, 934
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	1226
Cfr13I	GGNCC	2 cut(s)	161, 602
Csp6I	GTAC	2 cut(s)	25, 1238
CspCI	CAANNNNNGTGG	2 cut(s)	997, 1032
CviAII	CATG	8 cut(s)	64, 140, 296, 527, 780, 797, 816, 881
CviQI	GTAC	2 cut(s)	25, 1238
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	168, 645
DpnII	GATC	2 cut(s)	166, 643
Eam1104I	CTCTTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	942
Eco130I	CCWWGG	2 cut(s)	295, 815
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	1142
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	2 cut(s)	295, 815
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	295, 815
Esp3I	CGTCTC	2 cut(s)	235, 1127
FaeI	CATG	8 cut(s)	67, 143, 299, 530, 783, 800, 819, 884
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	5 cut(s)	146, 452, 458, 464, 476
FatI	CATG	8 cut(s)	63, 139, 295, 526, 779, 796, 815, 880
FauI	CCCGC	1 cut(s)	1096
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	18, 396, 623, 1222, 1227
FokI	GGATG	7 cut(s)	131, 217, 275, 323, 755, 974, 980
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	5 cut(s)	18, 396, 623, 1222, 1227
FspBI	CTAG	4 cut(s)	21, 129, 897, 1055
GlaI	GCGC	1 cut(s)	1225
GluI	GCNGC	5 cut(s)	18, 396, 623, 1222, 1227
GsaI	CCCAGC	1 cut(s)	945
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	2 cut(s)	603, 1020
HapII	CCGG	1 cut(s)	668
HhaI	GCGC	1 cut(s)	1226
Hin1II	CATG	8 cut(s)	67, 143, 299, 530, 783, 800, 819, 884
Hin6I	GCGC	1 cut(s)	1224
HinP1I	GCGC	1 cut(s)	1224
HinfI	GANTC	7 cut(s)	149, 329, 413, 539, 884, 1045, 1157
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	3 cut(s)	64, 599, 812
Hpy166II	GTNNAC	3 cut(s)	55, 227, 1238
Hpy188I	TCNGA	6 cut(s)	46, 154, 341, 412, 418, 427
Hpy188III	TCNNGA	4 cut(s)	140, 196, 611, 897
Hpy8I	GTNNAC	3 cut(s)	55, 227, 1238
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	3 cut(s)	336, 995, 1184
HpyCH4III	ACNGT	2 cut(s)	703, 806
HpyCH4V	TGCA	4 cut(s)	625, 724, 849, 1093
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 90, 404, 689, 784, 846, 872, 938
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	8 cut(s)	67, 143, 299, 530, 783, 800, 819, 884
HspAI	GCGC	1 cut(s)	1224
Kzo9I	GATC	2 cut(s)	166, 643
LmnI	GCTCC	2 cut(s)	193, 823
Lsp1109I	GCAGC	5 cut(s)	29, 382, 609, 1208, 1213
LweI	GCATC	2 cut(s)	280, 416
MaeI	CTAG	4 cut(s)	21, 129, 897, 1055
MaeIII	GTNAC	3 cut(s)	703, 800, 908
MalI	GATC	2 cut(s)	168, 645
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	2 cut(s)	166, 643
MboII	GAAGA	5 cut(s)	354, 362, 515, 959, 1067
MfeI	CAATTG	1 cut(s)	1137
MhlI	GDGCHC	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	1161
MseI	TTAA	2 cut(s)	711, 750
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	1 cut(s)	606
MunI	CAATTG	1 cut(s)	1137
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	8 cut(s)	17, 90, 404, 689, 784, 846, 872, 938
NcoI	CCATGG	2 cut(s)	295, 815
NdeII	GATC	2 cut(s)	166, 643
NlaIII	CATG	8 cut(s)	67, 143, 299, 530, 783, 800, 819, 884
NlaIV	GGNNCC	3 cut(s)	124, 163, 189
NmuCI	GTSAC	2 cut(s)	703, 800
NspV	TTCGAA	1 cut(s)	1146
PagI	TCATGA	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PctI	GAATGC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	1161
PfeI	GAWTC	6 cut(s)	329, 413, 539, 884, 1045, 1157
PkrI	GCNGC	5 cut(s)	19, 397, 624, 1223, 1228
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	604
PspFI	CCCAGC	1 cut(s)	941
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	3 cut(s)	124, 163, 189
PspPI	GGNCC	2 cut(s)	161, 602
PvuI	CGATCG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	26, 1239
RsaNI	GTAC	2 cut(s)	25, 1238
SaqAI	TTAA	2 cut(s)	711, 750
SatI	GCNGC	5 cut(s)	18, 396, 623, 1222, 1227
Sau3AI	GATC	2 cut(s)	166, 643
Sau96I	GGNCC	2 cut(s)	161, 602
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	280, 416
SfcI	CTRYAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	1146
SinI	GGWCC	1 cut(s)	161
SsiI	CCGC	3 cut(s)	99, 936, 1103
SspMI	CTAG	4 cut(s)	21, 129, 897, 1055
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	2 cut(s)	295, 815
TaaI	ACNGT	2 cut(s)	703, 806
TaqI	TCGA	6 cut(s)	169, 255, 382, 391, 1039, 1146
TatI	WGTACW	1 cut(s)	1237
TfiI	GAWTC	6 cut(s)	329, 413, 539, 884, 1045, 1157
Tru1I	TTAA	2 cut(s)	711, 750
Tru9I	TTAA	2 cut(s)	711, 750
TscAI	CASTG	4 cut(s)	574, 690, 706, 1068
TseFI	GTSAC	2 cut(s)	703, 800
TseI	GCWGC	5 cut(s)	17, 395, 622, 1221, 1226
Tsp45I	GTSAC	2 cut(s)	703, 800
TspGWI	ACGGA	2 cut(s)	247, 1004
TspRI	CASTG	4 cut(s)	574, 690, 706, 1068
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	4 cut(s)	155, 718, 791, 1142
XbaI	TCTAGA	1 cut(s)	896
XmiI	GTMKAC	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	1161
XspI	CTAG	4 cut(s)	21, 129, 897, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.