Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Forward (+)

167535 .. 169885

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1001300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGGACGCAATTGCCGCAAGGTATTGGTGCCACAGGTGTTCTGAAATAGTAAATCCCATCATGGAAGTAGAAATGAAATGCCCCTTATGCCAAAGCGGATTTATTGAGGAAATGAATGGCACTATGAGGGATAATCAAGACGCTGACTCTGATTTTGGATCCGATCGAGCACTCTCCCTCTGGGCTCCGATCTTGCTTGGCATGATGAACAATCCCCGTCGTCGTAGAAGATTAAGACGACTAGACTTTGATGAAGATAGATTAAGACGACTAGACTTTGATGAAGATGATGATGATGACAATGACAATGATGATGGTGAGACTCGCCAGGGTGGAGACACGGAATTGGACAGAGAACTTGAATCAATCATCCGAAGGAGGAGGAGAAGCTCAGCTTCTATTCTACAGCTGCTTCAAGGCATTCGAGCTGGCTTGGCATCTGAATCTGAGAATTCTGAGGGTGATAGGGATAGGGATCGAGGGAGAGAAAGAGAACGGGAGAGGGAGCGTGTAATTCTTATCAATCCTTTCAATCAAACCATCATTGTTCAGGGATCTTATGATTCGAATCAGGGTCAAATCAACAATCACACCCCTATCAGTTCATTAGGCGATTTTTTTGTTGGGCCTGGTTTGGATTTGTTGCTGGAACATTTGGCAGAGAATGATCCTAATAGGTATGGGACTCCGCCAGCACAAAAGGAGGCAGTGGAAGCGCTGCCCGCTGTGACAATCAAGGAGAATATGCAGTGTTCAGTGTGCTTGGATGATTTTGAGGTTGGTGTAGAAGCTAAAGAGATGCCATGTAAGCATAAGTTTCATAGCGGGTGTATTCTGCCATGGTTGGAGCTTCATAGTTCCTGTCCGGTTTGCAGGTTCCAGTTGCCTGCACATGAATCAAAGCGTGATTCAGATATTTCCAGGAATAGCAGTAACTCGAGGGAGAGTGAAGAGATTGGCGATGTTGGTGGTGGTGGTGGTGGGGAAGAGGGAGATGGGGATGGGGATGGGGATGGGGATGGGAGAAACGGTAACGGGAGAAGGTTTTCAATTCCGTGGCCTTTCAGTAGTCTGTTTTCTCACTCAGGATCTCAGTCAGGTGGCAGTGGGGGAAATTCATCGTCAGCAGCAGCAAATGGAACCGGAAGCGCTTCTCAAACAGAAGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

392

Amino Acids

43.29

Weight (kDa)

4.66

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	4.4e-10	zinc-ribbon
zf-RING_2	PF13639	251 - 293	8.2e-14	Ring finger domain
zf-C3HC4_2	PF13923	251 - 292	5.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	251 - 279	6.6e-09	RING-like zinc finger
zf-C3HC4	PF00097	252 - 292	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	263 - 293	1.2e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	30
AciI	CCGC	5 cut(s)	18, 99, 692, 726, 828
AclWI	GGATC	6 cut(s)	156, 169, 486, 565, 665, 1099
AcsI	RAATTY	2 cut(s)	454, 1117
AfeI	AGCGCT	2 cut(s)	720, 1153
AgsI	TTSAA	4 cut(s)	365, 419, 535, 1053
AjnI	CCWGG	3 cut(s)	330, 631, 923
AluBI	AGCT	6 cut(s)	393, 398, 412, 431, 794, 853
AluI	AGCT	6 cut(s)	393, 398, 412, 431, 794, 853
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	317, 333
AlwI	GGATC	6 cut(s)	156, 169, 486, 565, 665, 1099
Ama87I	CYCGRG	1 cut(s)	940
Aor51HI	AGCGCT	2 cut(s)	720, 1153
AoxI	GGCC	2 cut(s)	629, 1061
ApeKI	GCWGC	4 cut(s)	412, 721, 1130, 1133
ApoI	RAATTY	2 cut(s)	454, 1117
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	2 cut(s)	1048, 1153
AspLEI	GCGC	2 cut(s)	721, 1154
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	332, 476
AsuII	TTCGAA	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	940
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	4 cut(s)	399, 708, 1142, 1145
BccI	CCATC	8 cut(s)	68, 311, 551, 992, 998, 1004, 1010, 1016
BciT130I	CCWGG	3 cut(s)	332, 633, 925
BcoDI	GTCTC	2 cut(s)	317, 333
BfaI	CTAG	2 cut(s)	245, 275
BfmI	CTRYAG	1 cut(s)	407
BfoI	RGCGCY	2 cut(s)	722, 1155
BfuAI	ACCTGC	1 cut(s)	867
BisI	GCNGC	5 cut(s)	18, 413, 722, 1131, 1134
BlpI	GCTNAGC	1 cut(s)	394
BlsI	GCNGC	5 cut(s)	19, 414, 723, 1132, 1135
Bme1390I	CCNGG	3 cut(s)	332, 633, 925
BmeT110I	CYCGRG	1 cut(s)	940
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	5 cut(s)	32, 163, 189, 881, 1144
BmrFI	CCNGG	3 cut(s)	332, 633, 925
BmsI	GCATC	2 cut(s)	449, 792
Bpu1102I	GCTNAGC	1 cut(s)	394
Bpu14I	TTCGAA	1 cut(s)	569
BsaBI	GATNNNNATC	2 cut(s)	477, 570
BsaJI	CCNNGG	3 cut(s)	331, 842, 1058
BsaWI	WCCGGW	2 cut(s)	868, 1145
BsaXI	ACNNNNNCTCC	2 cut(s)	1018, 1048
Bse1I	ACTGG	1 cut(s)	883
Bse8I	GATNNNNATC	2 cut(s)	477, 570
BseBI	CCWGG	3 cut(s)	332, 633, 925
BseDI	CCNNGG	3 cut(s)	331, 842, 1058
BseGI	GGATG	6 cut(s)	372, 775, 1009, 1015, 1021, 1027
BseJI	GATNNNNATC	2 cut(s)	477, 570
BseMII	CTCAG	5 cut(s)	408, 441, 450, 1101, 1109
BseNI	ACTGG	1 cut(s)	883
BseRI	GAGGAG	2 cut(s)	397, 400
BseXI	GCAGC	4 cut(s)	399, 708, 1142, 1145
BsgI	GTGCAG	1 cut(s)	876
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	631, 1063
BshNI	GGYRCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	940
BsiSI	CCGG	2 cut(s)	869, 1146
BslFI	GGGAC	1 cut(s)	700
BsmAI	GTCTC	2 cut(s)	317, 333
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	631, 1063
BsoBI	CYCGRG	1 cut(s)	940
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	175, 190
Bsp143I	GATC	7 cut(s)	161, 166, 192, 478, 557, 670, 1091
Bsp1720I	GCTNAGC	1 cut(s)	394
Bsp19I	CCATGG	1 cut(s)	842
BspACI	CCGC	5 cut(s)	18, 99, 692, 726, 828
BspANI	GGCC	2 cut(s)	631, 1063
BspCNI	CTCAG	5 cut(s)	407, 442, 451, 1100, 1108
BspLI	GGNNCC	5 cut(s)	32, 163, 189, 881, 1144
BspMI	ACCTGC	1 cut(s)	867
BspPI	GGATC	6 cut(s)	156, 169, 486, 565, 665, 1099
BspT104I	TTCGAA	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	883
BssECI	CCNNGG	3 cut(s)	331, 842, 1058
BssMI	GATC	7 cut(s)	161, 166, 192, 478, 557, 670, 1091
BssT1I	CCWWGG	1 cut(s)	842
Bst2UI	CCWGG	3 cut(s)	332, 633, 925
Bst4CI	ACNGT	1 cut(s)	1034
Bst6I	CTCTTC	3 cut(s)	948, 984, 1161
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	4 cut(s)	433, 696, 726, 891
BstDEI	CTNAG	5 cut(s)	394, 450, 459, 1087, 1095
BstDSI	CCRYGG	2 cut(s)	842, 1058
BstF5I	GGATG	6 cut(s)	372, 775, 1009, 1015, 1021, 1027
BstH2I	RGCGCY	2 cut(s)	722, 1155
BstHHI	GCGC	2 cut(s)	721, 1154
BstKTI	GATC	7 cut(s)	164, 169, 195, 481, 560, 673, 1094
BstMAI	GTCTC	2 cut(s)	317, 333
BstMBI	GATC	7 cut(s)	161, 166, 192, 478, 557, 670, 1091
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 90, 437, 716, 725, 811
BstNI	CCWGG	3 cut(s)	332, 633, 925
BstSCI	CCNGG	3 cut(s)	330, 631, 923
BstSFI	CTRYAG	1 cut(s)	407
BstV1I	GCAGC	4 cut(s)	399, 708, 1142, 1145
BstX2I	RGATCY	3 cut(s)	161, 557, 1091
BstYI	RGATCY	3 cut(s)	161, 557, 1091
BsuRI	GGCC	2 cut(s)	631, 1063
BtgI	CCRYGG	2 cut(s)	842, 1058
BtgZI	GCGATG	1 cut(s)	978
BtsCI	GGATG	6 cut(s)	372, 775, 1009, 1015, 1021, 1027
BtsI	GCAGTG	3 cut(s)	717, 758, 1114
BtsIMutI	CAGTG	4 cut(s)	717, 758, 765, 1114
BveI	ACCTGC	1 cut(s)	867
Cac8I	GCNNGC	4 cut(s)	433, 696, 726, 891
CfoI	GCGC	2 cut(s)	721, 1154
Cfr13I	GGNCC	1 cut(s)	629
CseI	GACGC	2 cut(s)	17, 152
CviAII	CATG	5 cut(s)	64, 205, 807, 843, 896
DdeI	CTNAG	5 cut(s)	394, 450, 459, 1087, 1095
DpnI	GATC	7 cut(s)	163, 168, 194, 480, 559, 672, 1093
DpnII	GATC	7 cut(s)	161, 166, 192, 478, 557, 670, 1091
Eam1104I	CTCTTC	3 cut(s)	948, 984, 1161
EarI	CTCTTC	3 cut(s)	948, 984, 1161
EciI	GGCGGA	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	842
Eco24I	GRGCYC	1 cut(s)	190
Eco47III	AGCGCT	2 cut(s)	720, 1153
Eco88I	CYCGRG	1 cut(s)	940
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	3 cut(s)	330, 631, 923
EcoT14I	CCWWGG	1 cut(s)	842
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	842
FaeI	CATG	5 cut(s)	67, 208, 810, 846, 899
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	5 cut(s)	63, 204, 806, 842, 895
FauI	CCCGC	2 cut(s)	733, 821
Fnu4HI	GCNGC	5 cut(s)	18, 413, 722, 1131, 1134
FokI	GGATG	6 cut(s)	359, 782, 1016, 1022, 1028, 1034
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	5 cut(s)	18, 413, 722, 1131, 1134
FspBI	CTAG	2 cut(s)	245, 275
GlaI	GCGC	2 cut(s)	720, 1153
GluI	GCNGC	5 cut(s)	18, 413, 722, 1131, 1134
HaeII	RGCGCY	2 cut(s)	722, 1155
HaeIII	GGCC	2 cut(s)	631, 1063
HapII	CCGG	2 cut(s)	869, 1146
HgaI	GACGC	2 cut(s)	17, 152
HhaI	GCGC	2 cut(s)	721, 1154
Hin1II	CATG	5 cut(s)	67, 208, 810, 846, 899
Hin6I	GCGC	2 cut(s)	719, 1152
HinP1I	GCGC	2 cut(s)	719, 1152
HinfI	GANTC	9 cut(s)	149, 325, 365, 446, 566, 571, 688, 899, 911
HpaII	CCGG	2 cut(s)	869, 1146
HphI	GGTGA	2 cut(s)	332, 476
Hpy188I	TCNGA	9 cut(s)	46, 154, 166, 192, 377, 445, 451, 460, 916
Hpy188III	TCNNGA	2 cut(s)	140, 1089
Hpy99I	CGWCG	2 cut(s)	225, 228
HpyAV	CCTTC	2 cut(s)	372, 1038
HpyCH4III	ACNGT	1 cut(s)	1034
HpyCH4V	TGCA	3 cut(s)	751, 876, 893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 90, 437, 716, 725, 811
HpyF3I	CTNAG	5 cut(s)	394, 450, 459, 1087, 1095
Hsp92II	CATG	5 cut(s)	67, 208, 810, 846, 899
HspAI	GCGC	2 cut(s)	719, 1152
Kzo9I	GATC	7 cut(s)	161, 166, 192, 478, 557, 670, 1091
LmnI	GCTCC	3 cut(s)	193, 508, 850
Lsp1109I	GCAGC	4 cut(s)	399, 708, 1142, 1145
LweI	GCATC	2 cut(s)	449, 792
MaeI	CTAG	2 cut(s)	245, 275
MaeIII	GTNAC	3 cut(s)	730, 935, 1034
MalI	GATC	7 cut(s)	163, 168, 194, 480, 559, 672, 1093
MboI	GATC	7 cut(s)	161, 166, 192, 478, 557, 670, 1091
MboII	GAAGA	5 cut(s)	243, 269, 299, 965, 1001
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	3 cut(s)	161, 557, 1091
MhlI	GDGCHC	2 cut(s)	175, 190
MluCI	AATT	6 cut(s)	12, 347, 454, 516, 1053, 1117
MlyI	GAGTC	3 cut(s)	143, 319, 682
MmeI	TCCRAC	1 cut(s)	828
MroXI	GAANNNNTTC	2 cut(s)	1048, 1153
MseI	TTAA	2 cut(s)	236, 266
MspA1I	CMGCKG	2 cut(s)	412, 728
MspI	CCGG	2 cut(s)	869, 1146
MspR9I	CCNGG	3 cut(s)	332, 633, 925
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	3 cut(s)	332, 633, 925
MwoI	GCNNNNNNNGC	6 cut(s)	17, 90, 437, 716, 725, 811
NcoI	CCATGG	1 cut(s)	842
NdeII	GATC	7 cut(s)	161, 166, 192, 478, 557, 670, 1091
NlaIII	CATG	5 cut(s)	67, 208, 810, 846, 899
NlaIV	GGNNCC	5 cut(s)	32, 163, 189, 881, 1144
NmuCI	GTSAC	1 cut(s)	730
NspV	TTCGAA	1 cut(s)	569
PaeR7I	CTCGAG	1 cut(s)	940
PctI	GAATGC	1 cut(s)	423
PdmI	GAANNNNTTC	2 cut(s)	1048, 1153
PfeI	GAWTC	6 cut(s)	365, 446, 566, 571, 899, 911
PfoI	TCCNGGA	1 cut(s)	923
PkrI	GCNGC	5 cut(s)	19, 414, 723, 1132, 1135
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	3 cut(s)	143, 319, 682
PpsI	GAGTC	3 cut(s)	143, 319, 682
Psp6I	CCWGG	3 cut(s)	330, 631, 923
PspGI	CCWGG	3 cut(s)	330, 631, 923
PspN4I	GGNNCC	5 cut(s)	32, 163, 189, 881, 1144
PspPI	GGNCC	1 cut(s)	629
PspXI	VCTCGAGB	1 cut(s)	940
PsuI	RGATCY	3 cut(s)	161, 557, 1091
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	236, 266
SatI	GCNGC	5 cut(s)	18, 413, 722, 1131, 1134
Sau3AI	GATC	7 cut(s)	161, 166, 192, 478, 557, 670, 1091
Sau96I	GGNCC	1 cut(s)	629
SchI	GAGTC	3 cut(s)	143, 319, 682
ScrFI	CCNGG	3 cut(s)	332, 633, 925
SduI	GDGCHC	2 cut(s)	175, 190
SfaNI	GCATC	2 cut(s)	449, 792
SfcI	CTRYAG	1 cut(s)	407
Sfr274I	CTCGAG	1 cut(s)	940
SfuI	TTCGAA	1 cut(s)	569
SlaI	CTCGAG	1 cut(s)	940
SmlI	CTYRAG	1 cut(s)	940
SmoI	CTYRAG	1 cut(s)	940
Sse9I	AATT	6 cut(s)	12, 347, 454, 516, 1053, 1117
SsiI	CCGC	5 cut(s)	18, 99, 692, 726, 828
SspMI	CTAG	2 cut(s)	245, 275
StyD4I	CCNGG	3 cut(s)	330, 631, 923
StyI	CCWWGG	1 cut(s)	842
TaaI	ACNGT	1 cut(s)	1034
TaqI	TCGA	5 cut(s)	169, 427, 481, 569, 941
TasI	AATT	6 cut(s)	12, 347, 454, 516, 1053, 1117
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	6 cut(s)	365, 446, 566, 571, 899, 911
Tru1I	TTAA	2 cut(s)	236, 266
Tru9I	TTAA	2 cut(s)	236, 266
TscAI	CASTG	4 cut(s)	717, 758, 765, 1114
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	4 cut(s)	412, 721, 1130, 1133
Tsp45I	GTSAC	1 cut(s)	730
TspGWI	ACGGA	2 cut(s)	359, 1047
TspRI	CASTG	4 cut(s)	717, 758, 765, 1114
XapI	RAATTY	2 cut(s)	454, 1117
XhoI	CTCGAG	1 cut(s)	940
XmnI	GAANNNNTTC	2 cut(s)	1048, 1153
XspI	CTAG	2 cut(s)	245, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.