Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Forward (+)

1062449 .. 1063408

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGGATGATGAACAATCCCCGTAGACGGCGGCGATTGAGACGACAGGAGTTCGAAGAGGATGATGATGAGGATAATGAGAATGATGATGCCCATGGGGGTGACACTGAACTGGACAGAGAACTTGAATCAATCATCCGAAGGAGGAGGAGAAGCTCATCTTCCATTCTTCAACTGCTTCGAGGCATTCGAGCAGCTGGCTTGGCATCTGAATCAGAGAATTCTGAGAGTGATAGGGACAGGGATAGGGATAGGGACAGAGAAAGGGAAAGGGAACGCCTAATTCTTATCAACCCTTTCAATCAGACCATCATTCTTCATGGTTCTTACGATTCAAGTCAGGGTCAAAACAACAATCACACCACTATTGGTTCATTAGGTGATTATTTTATCGGGCCTGGTCTGGACTTATTGCTGCAACATTTGGCAGAGAATGATCCTAATAGATATGGAACTCCTCCGGCACAAAAGGAGGCAGTGGAAGCTCTGCCCACTGTGACAATTAAGGAGAATTTGCAGTGTTCTGTGTGCTTGGATGATTTTAAGATTGGTGTTGAAGCAAAAGAAATGCCATGTAAGCATAAATTTCATGGTGACTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGCCCAGTTTGCAGGTTTCAGTTGCCTGCTGATGAAGCCAAACATGATTCCAATAATTCTAGAAACAGCAGTAACCAGAGGGATGGTGAGACCACTGGCGGTGCTGGGGAAGAGGGAGATGGAGATGAGGATGGGGATGGGGATGGGGATGGGGATGGTATTGCAATTGGGAGAAATGGAAGTGGCAGAAGGTTTCAAATTCCGTGGCCTTTCAATCTGTTTTCATCGACAGAATCTCAATCTAGTGGCAGTGGGGGTAATTCTTCCTCATCAGCAAATGCAACTGGAAGCGGGAGTGGGAGTGGTTCGTCTCAAACAGATGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

319

Amino Acids

35.07

Weight (kDa)

4.75

Isoelectric Point (pI)

61.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	173 - 215	7.3e-14	Ring finger domain
zf-C3HC4_2	PF13923	173 - 214	1.2e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	173 - 201	2.6e-09	RING-like zinc finger
zf-C3HC4	PF00097	174 - 214	1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	188 - 215	1.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	3 cut(s)	31, 729, 921
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	4 cut(s)	220, 511, 584, 828
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	7 cut(s)	128, 173, 301, 336, 557, 827, 844
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	4 cut(s)	156, 197, 485, 619
AluI	AGCT	4 cut(s)	156, 197, 485, 619
Alw26I	GTCTC	3 cut(s)	34, 713, 945
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	2 cut(s)	395, 836
ApeKI	GCWGC	2 cut(s)	194, 415
ApoI	RAATTY	4 cut(s)	220, 511, 584, 828
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	113, 392, 605, 728
AsuII	TTCGAA	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	206, 402
BccI	CCATC	8 cut(s)	317, 707, 743, 755, 761, 767, 773, 779
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	399
BcoDI	GTCTC	3 cut(s)	34, 713, 945
BfaI	CTAG	2 cut(s)	690, 873
BfuAI	ACCTGC	1 cut(s)	633
BisI	GCNGC	3 cut(s)	32, 195, 416
BlsI	GCNGC	3 cut(s)	33, 196, 417
Bme1390I	CCNGG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	629
BmsI	GCATC	2 cut(s)	79, 215
BmuI	ACTGGG	1 cut(s)	629
BpmI	CTGGAG	1 cut(s)	635
Bpu14I	TTCGAA	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	3 cut(s)	94, 608, 833
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	4 cut(s)	117, 635, 730, 919
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	94, 608, 833
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	4 cut(s)	117, 635, 730, 919
BseRI	GAGGAG	3 cut(s)	160, 163, 447
BseXI	GCAGC	2 cut(s)	206, 402
BseYI	CCCAGC	1 cut(s)	734
BshFI	GGCC	2 cut(s)	397, 838
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	2 cut(s)	251, 269
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	3 cut(s)	34, 713, 945
BsmBI	CGTCTC	2 cut(s)	34, 945
BsmFI	GGGAC	2 cut(s)	251, 269
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	397, 838
Bso31I	GGTCTC	1 cut(s)	713
Bsp119I	TTCGAA	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	436
Bsp19I	CCATGG	2 cut(s)	94, 608
BspACI	CCGC	3 cut(s)	31, 729, 921
BspANI	GGCC	2 cut(s)	397, 838
BspCNI	CTCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	633
BspPI	GGATC	1 cut(s)	431
BspT104I	TTCGAA	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	713
BsrI	ACTGG	4 cut(s)	117, 635, 730, 919
BssECI	CCNNGG	3 cut(s)	94, 608, 833
BssMI	GATC	1 cut(s)	436
BssT1I	CCWWGG	2 cut(s)	94, 608
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	496, 599
Bst6I	CTCTTC	2 cut(s)	51, 735
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	199, 657
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	3 cut(s)	94, 608, 833
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	3 cut(s)	34, 713, 945
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 482, 577, 639, 665
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstV1I	GCAGC	2 cut(s)	206, 402
BstXI	CCANNNNNNTGG	1 cut(s)	713
BsuRI	GGCC	2 cut(s)	397, 838
BtgI	CCRYGG	3 cut(s)	94, 608, 833
BtsI	GCAGTG	3 cut(s)	483, 524, 886
BtsIMutI	CAGTG	6 cut(s)	105, 483, 492, 524, 723, 886
BveI	ACCTGC	1 cut(s)	633
Cac8I	GCNNGC	2 cut(s)	199, 657
Cfr13I	GGNCC	1 cut(s)	395
CspCI	CAANNNNNGTGG	2 cut(s)	815, 850
CviAII	CATG	6 cut(s)	95, 320, 573, 590, 609, 674
CviJI	RGCY	9 cut(s)	156, 197, 201, 397, 485, 613, 619, 668, 838
CviKI_1	RGCY	9 cut(s)	156, 197, 201, 397, 485, 613, 619, 668, 838
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
Eam1104I	CTCTTC	2 cut(s)	51, 735
EarI	CTCTTC	2 cut(s)	51, 735
Eco130I	CCWWGG	2 cut(s)	94, 608
Eco31I	GGTCTC	1 cut(s)	713
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	94, 608
ErhI	CCWWGG	2 cut(s)	94, 608
Esp3I	CGTCTC	2 cut(s)	34, 945
FaeI	CATG	6 cut(s)	98, 323, 576, 593, 612, 677
FaiI	YATR	9 cut(s)	96, 321, 450, 574, 582, 591, 610, 624, 675
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	2 cut(s)	251, 269
FatI	CATG	6 cut(s)	94, 319, 572, 589, 608, 673
FauI	CCCGC	1 cut(s)	914
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	32, 195, 416
Fsp4HI	GCNGC	3 cut(s)	32, 195, 416
FspBI	CTAG	2 cut(s)	690, 873
GluI	GCNGC	3 cut(s)	32, 195, 416
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	397, 838
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	6 cut(s)	98, 323, 576, 593, 612, 677
HinfI	GANTC	5 cut(s)	128, 212, 332, 677, 863
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	4 cut(s)	113, 392, 605, 728
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	5 cut(s)	140, 211, 217, 226, 306
Hpy188III	TCNNGA	2 cut(s)	404, 690
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	135, 813
HpyCH4III	ACNGT	2 cut(s)	496, 599
HpyCH4V	TGCA	5 cut(s)	418, 517, 642, 794, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 482, 577, 639, 665
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	6 cut(s)	98, 323, 576, 593, 612, 677
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	2 cut(s)	206, 402
LweI	GCATC	2 cut(s)	79, 215
MaeI	CTAG	2 cut(s)	690, 873
MaeIII	GTNAC	4 cut(s)	101, 496, 593, 701
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	6 cut(s)	68, 153, 161, 308, 752, 885
MfeI	CAATTG	2 cut(s)	795, 955
MseI	TTAA	2 cut(s)	504, 543
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	2 cut(s)	795, 955
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	5 cut(s)	203, 482, 577, 639, 665
NcoI	CCATGG	2 cut(s)	94, 608
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	6 cut(s)	98, 323, 576, 593, 612, 677
NmuCI	GTSAC	3 cut(s)	101, 496, 593
NspV	TTCGAA	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	5 cut(s)	128, 212, 332, 677, 863
PkrI	GCNGC	3 cut(s)	33, 196, 417
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	504, 543
SatI	GCNGC	3 cut(s)	32, 195, 416
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	399
SetI	ASST	7 cut(s)	158, 199, 382, 487, 621, 647, 824
SfaNI	GCATC	2 cut(s)	79, 215
SfuI	TTCGAA	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	99
SsiI	CCGC	3 cut(s)	31, 729, 921
SspMI	CTAG	2 cut(s)	690, 873
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	2 cut(s)	94, 608
TaaI	ACNGT	2 cut(s)	496, 599
TaqI	TCGA	4 cut(s)	54, 181, 190, 857
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	5 cut(s)	128, 212, 332, 677, 863
Tru1I	TTAA	2 cut(s)	504, 543
Tru9I	TTAA	2 cut(s)	504, 543
TscAI	CASTG	6 cut(s)	112, 483, 499, 524, 730, 886
TseFI	GTSAC	3 cut(s)	101, 496, 593
TseI	GCWGC	2 cut(s)	194, 415
Tsp45I	GTSAC	3 cut(s)	101, 496, 593
TspDTI	ATGAA	7 cut(s)	26, 308, 363, 578, 611, 678, 843
TspGWI	ACGGA	1 cut(s)	822
TspRI	CASTG	6 cut(s)	112, 483, 499, 524, 730, 886
XapI	RAATTY	4 cut(s)	220, 511, 584, 828
XbaI	TCTAGA	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	2 cut(s)	690, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.