Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Reverse (-)

88179542 .. 88181853

Gene Structure 2312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG574900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAGGAAGCAATGGCAGCTAGGTACTGGTGCCACATGTGTTCTGAAATGGTGAACCCCGTCATGGGAGTTGAAATGAAATGCCCATTATGCCAGAGCGGATTTATTGAGGAAATGGATGGCACCACAAGGGACAATCATGAACCCGACTCTGAATTTGGACCCGATCGACCTCTCTCCCTCTGGGCTCCAATCTTGATGGGGATGATGAACAACAATCCCCGTAGACGACGGAGATTGAGACGACAAGAGTTCGATGAGGATGATGATGAGGATAATGAGAATGATGATGCCCATGGGGGAGACACTGAACTGGACAGAGAACTTGAATCAATCATCCGTAGGAGGAGGAGAAGCTCATCTTCCATTCTTCAACTGCTTCGGGGCATTCGAGCAGCTGGCTTGGCATCTGAATCAGAGAATTCTGAGAGTGATAGGGACAGGGACAGGGATAGGGATAGGGACAGAGAGAGGGAAAGGGAAAGGGAACGCTTAATTCTTATCAATCCTTTCAATCAGACCATCATTCTTCATGGTTCTTACGATTCAAGTCAGGGTCAAAACAACAATCACACCGCTATTGGTTCATTAGGTGATTATTTTATCGGGCCTGGTCTGGACTTATTGCTGCAACATTTGGCAGAGAATGATCCTAATAGATATGGAACTCCTCCGGCACAAAAGGAGGCAGTGGAAGCTCTGCCCACTGTGACAATTAAGGAGAATTTGCAGTGTTCTGTGTGCTTGGATGATTTTAAGATCGGTGTTGAAGCAAAAGAAATGCCATGTAAGCATAAATTTCATGGTGACTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGCCCAGTTTGCAGGTTTCAGTTGCCTGCTGATGAAGCCAAACATGATTCCAATAATTCTAGAAACAGCAGTAACCAGAGGGATAGTGAGAACACTGGCGGTGCTGGGGAAGAGGGAGATGAGGATGGGGATGGTATTGCGATTGGGAGAAATGGAAGTGGCAGAAGGTTTCAAATTCCGTGGCCTTTCAATCTGTTTTCATCGACAGAATCTCAATCTAGTGGCAGTGGGGGTAATTCTTCCTCATCAGCAAATGCAACTGGAAGCGGGAGTGGGAGTGGTTGGTCTCAAACAGATGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

382

Amino Acids

42.65

Weight (kDa)

4.78

Isoelectric Point (pI)

61.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	3.2e-11	zinc-ribbon
zf-RING_2	PF13639	244 - 286	9.4e-14	Ring finger domain
zf-C3HC4_2	PF13923	244 - 285	1.5e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	244 - 272	3.3e-09	RING-like zinc finger
zf-C3HC4	PF00097	245 - 285	1.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	259 - 286	1.4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	846
AccB1I	GGYRCC	2 cut(s)	30, 122
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	4 cut(s)	99, 576, 942, 1110
AclWI	GGATC	1 cut(s)	644
AcsI	RAATTY	5 cut(s)	155, 421, 724, 797, 1017
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	64, 65
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	8 cut(s)	74, 329, 374, 514, 549, 770, 1016, 1033
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	5 cut(s)	20, 357, 398, 698, 832
AluI	AGCT	5 cut(s)	20, 357, 398, 698, 832
Alw26I	GTCTC	3 cut(s)	235, 297, 1134
AlwI	GGATC	1 cut(s)	644
AoxI	GGCC	2 cut(s)	608, 1025
ApeKI	GCWGC	3 cut(s)	17, 395, 628
ApoI	RAATTY	5 cut(s)	155, 421, 724, 797, 1017
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspS9I	GGNCC	2 cut(s)	161, 608
AsuHPI	GGTGA	3 cut(s)	64, 605, 818
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	30, 122
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	29, 407, 615
BccI	CCATC	5 cut(s)	113, 193, 530, 962, 968
BciT130I	CCWGG	1 cut(s)	612
BcoDI	GTCTC	3 cut(s)	235, 297, 1134
BfaI	CTAG	3 cut(s)	21, 903, 1062
BfuAI	ACCTGC	1 cut(s)	846
BisI	GCNGC	3 cut(s)	18, 396, 629
BlsI	GCNGC	3 cut(s)	19, 397, 630
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	161, 608
BmiI	GGNNCC	4 cut(s)	32, 124, 163, 189
BmrFI	CCNGG	1 cut(s)	612
BmrI	ACTGGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	280, 416
BmuI	ACTGGG	1 cut(s)	842
BpmI	CTGGAG	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	1134
BsaJI	CCNNGG	3 cut(s)	295, 821, 1022
BsaXI	ACNNNNNCTCC	2 cut(s)	1105, 1135
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 65
Bse1I	ACTGG	5 cut(s)	32, 318, 848, 943, 1108
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	3 cut(s)	295, 821, 1022
BseGI	GGATG	7 cut(s)	124, 210, 268, 336, 754, 973, 979
BseLI	CCNNNNNNNGG	2 cut(s)	64, 65
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	5 cut(s)	32, 318, 848, 943, 1108
BseRI	GAGGAG	3 cut(s)	361, 364, 660
BseXI	GCAGC	3 cut(s)	29, 407, 615
BseYI	CCCAGC	1 cut(s)	947
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	610, 1027
BshNI	GGYRCC	2 cut(s)	30, 122
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	4 cut(s)	146, 452, 458, 476
BslI	CCNNNNNNNGG	2 cut(s)	64, 65
BsmAI	GTCTC	3 cut(s)	235, 297, 1134
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	4 cut(s)	146, 452, 458, 476
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	610, 1027
Bso31I	GGTCTC	1 cut(s)	1134
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	166, 649, 759
Bsp19I	CCATGG	2 cut(s)	295, 821
BspACI	CCGC	4 cut(s)	99, 576, 942, 1110
BspANI	GGCC	2 cut(s)	610, 1027
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	4 cut(s)	32, 124, 163, 189
BspMI	ACCTGC	1 cut(s)	846
BspPI	GGATC	1 cut(s)	644
BspT107I	GGYRCC	2 cut(s)	30, 122
BspTNI	GGTCTC	1 cut(s)	1134
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	5 cut(s)	32, 318, 848, 943, 1108
BssECI	CCNNGG	3 cut(s)	295, 821, 1022
BssMI	GATC	3 cut(s)	166, 649, 759
BssT1I	CCWWGG	2 cut(s)	295, 821
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	709, 812
Bst6I	CTCTTC	1 cut(s)	948
BstC8I	GCNNGC	2 cut(s)	400, 870
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	3 cut(s)	295, 821, 1022
BstF5I	GGATG	7 cut(s)	124, 210, 268, 336, 754, 973, 979
BstKTI	GATC	3 cut(s)	169, 652, 762
BstMAI	GTCTC	3 cut(s)	235, 297, 1134
BstMBI	GATC	3 cut(s)	166, 649, 759
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 90, 404, 695, 790, 852, 878
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	610
BstV1I	GCAGC	3 cut(s)	29, 407, 615
BsuRI	GGCC	2 cut(s)	610, 1027
BtgI	CCRYGG	3 cut(s)	295, 821, 1022
BtsCI	GGATG	7 cut(s)	124, 210, 268, 336, 754, 973, 979
BtsI	GCAGTG	3 cut(s)	696, 737, 1075
BtsIMutI	CAGTG	6 cut(s)	306, 696, 705, 737, 936, 1075
BveI	ACCTGC	1 cut(s)	846
Cac8I	GCNNGC	2 cut(s)	400, 870
CciI	TCATGA	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	161, 608
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	1004, 1039
CviAII	CATG	9 cut(s)	37, 64, 140, 296, 533, 786, 803, 822, 887
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	3 cut(s)	168, 651, 761
DpnII	GATC	3 cut(s)	166, 649, 759
Eam1104I	CTCTTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	948
Eco130I	CCWWGG	2 cut(s)	295, 821
Eco24I	GRGCYC	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	1134
Eco47I	GGWCC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	2 cut(s)	295, 821
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	295, 821
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	9 cut(s)	40, 67, 143, 299, 536, 789, 806, 825, 890
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	4 cut(s)	146, 452, 458, 476
FatI	CATG	9 cut(s)	36, 63, 139, 295, 532, 785, 802, 821, 886
FauI	CCCGC	1 cut(s)	1103
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	18, 396, 629
FokI	GGATG	7 cut(s)	131, 217, 275, 323, 761, 980, 986
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	18, 396, 629
FspBI	CTAG	3 cut(s)	21, 903, 1062
GluI	GCNGC	3 cut(s)	18, 396, 629
GsaI	CCCAGC	1 cut(s)	951
GsuI	CTGGAG	1 cut(s)	848
HaeIII	GGCC	2 cut(s)	610, 1027
HapII	CCGG	1 cut(s)	674
Hin1II	CATG	9 cut(s)	40, 67, 143, 299, 536, 789, 806, 825, 890
HinfI	GANTC	6 cut(s)	149, 329, 413, 545, 890, 1052
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	3 cut(s)	64, 605, 818
Hpy166II	GTNNAC	2 cut(s)	55, 227
Hpy188I	TCNGA	6 cut(s)	46, 154, 412, 418, 427, 519
Hpy188III	TCNNGA	4 cut(s)	140, 196, 617, 903
Hpy8I	GTNNAC	2 cut(s)	55, 227
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	1 cut(s)	1002
HpyCH4III	ACNGT	2 cut(s)	709, 812
HpyCH4V	TGCA	4 cut(s)	631, 730, 855, 1100
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 90, 404, 695, 790, 852, 878
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	9 cut(s)	40, 67, 143, 299, 536, 789, 806, 825, 890
Kzo9I	GATC	3 cut(s)	166, 649, 759
LmnI	GCTCC	2 cut(s)	193, 829
Lsp1109I	GCAGC	3 cut(s)	29, 407, 615
LweI	GCATC	2 cut(s)	280, 416
MaeI	CTAG	3 cut(s)	21, 903, 1062
MaeIII	GTNAC	3 cut(s)	709, 806, 914
MalI	GATC	3 cut(s)	168, 651, 761
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	3 cut(s)	166, 649, 759
MboII	GAAGA	5 cut(s)	354, 362, 521, 965, 1074
MfeI	CAATTG	1 cut(s)	1144
MhlI	GDGCHC	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	143
MseI	TTAA	3 cut(s)	494, 717, 756
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	1 cut(s)	1144
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	7 cut(s)	17, 90, 404, 695, 790, 852, 878
NcoI	CCATGG	2 cut(s)	295, 821
NdeII	GATC	3 cut(s)	166, 649, 759
NlaIII	CATG	9 cut(s)	40, 67, 143, 299, 536, 789, 806, 825, 890
NlaIV	GGNNCC	4 cut(s)	32, 124, 163, 189
NmuCI	GTSAC	2 cut(s)	709, 806
NspI	RCATGY	1 cut(s)	40
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	5 cut(s)	329, 413, 545, 890, 1052
PkrI	GCNGC	3 cut(s)	19, 397, 630
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PscI	ACATGT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	4 cut(s)	32, 124, 163, 189
PspPI	GGNCC	2 cut(s)	161, 608
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	494, 717, 756
SatI	GCNGC	3 cut(s)	18, 396, 629
Sau3AI	GATC	3 cut(s)	166, 649, 759
Sau96I	GGNCC	2 cut(s)	161, 608
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	280, 416
SinI	GGWCC	1 cut(s)	161
SsiI	CCGC	4 cut(s)	99, 576, 942, 1110
SspMI	CTAG	3 cut(s)	21, 903, 1062
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	2 cut(s)	295, 821
TaaI	ACNGT	2 cut(s)	709, 812
TaqI	TCGA	4 cut(s)	169, 255, 391, 1046
TfiI	GAWTC	5 cut(s)	329, 413, 545, 890, 1052
Tru1I	TTAA	3 cut(s)	494, 717, 756
Tru9I	TTAA	3 cut(s)	494, 717, 756
TscAI	CASTG	6 cut(s)	313, 696, 712, 737, 943, 1075
TseFI	GTSAC	2 cut(s)	709, 806
TseI	GCWGC	3 cut(s)	17, 395, 628
Tsp45I	GTSAC	2 cut(s)	709, 806
TspDTI	ATGAA	9 cut(s)	92, 156, 224, 521, 576, 791, 824, 891, 1032
TspGWI	ACGGA	3 cut(s)	247, 329, 1011
TspRI	CASTG	6 cut(s)	313, 696, 712, 737, 943, 1075
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	5 cut(s)	155, 421, 724, 797, 1017
XbaI	TCTAGA	1 cut(s)	902
XceI	RCATGY	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	3 cut(s)	21, 903, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.