Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Reverse (-)

89662286 .. 89665277

Gene Structure 2992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35814

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGGAAGAAATGGCAGCTAGGTACTGGTGCTACAGGTGTTCTGAAATGGTGAACCCCGTCATGGGAGTTGAAATGAAATGCCCATTTTGCCAGAGCGGATTTATTGAGGAAATGGATGGCACCACTAGGGACAATCAGGAACCCGACTCTGAATTTGGACCCGATCGACCTCTCTCCCTCTGGGCTCCAATCTTGATGGGGATGATGAACAACAATCCCCGTAGACGACGGAGATTGAGACGACAAGAGTTCGATGAGGATGATGATGAGGATAATGAGAATGATGATGCCCATGGGGGAGAGACTGAACTGGACAGAGAACTTGAATCAATCATCCGAAGGAGGAGGAGAAGCTCATCTTCCATTCTTCAGCTGCTTCGAGGCATTCGAGCTGCTGGCTTGGCATCTGAATCAGAGAATTCTGAGAGTGATAGGGACAGGGACCGGGACAGGGATAGGGATAGGGACAGGGACAGGGAAAGGGAAAGGGAACGCCTAATTCTTATCAACCCTTTCAATCAAACCATCATTCTTCATGGTTCTTACGATTCAAGTCAGGGTCAAAACAACAATCACACTGCTATTGGTTCATTAGGTGATTATTTTATTGGCCCTGGTCTGGACTTATTGCTGCAACATTTGGCAGAGAATGATCCTAATAGATATGGAACTCCTCCGGCACAAAAGGAGGCAGTGGAAGCTCTGCCCACTGTGACAATTAAGGAGAATTTGCAATGTTCTGTGTGCTTGGATGATTTTAAGATTGGTGTTGAAGCAAAAGAAATGCCATGCAAGCATAAATTTCATGGTGACTGTATTCTGCCATGGCTGGAGCTTCATAGTTCCTGCCCAGTTTGCAGGTTTCAGTTGCCTGCTGATGAAGCCAAACATGATTCCAATAATTCTAGAAACAGCAGTAACCAGAGGGATAGTGAGAACACTGGCGTTGCTGGGGAAGAGGGAGATGAGGATGGGGATGGGGATGGGGATGGGGATGGGGATGGTATTGCGATTGGGAGAAATGGAAGTGGCAGAAGGTTTCAATTTCCGTGGCCTTTCAATCTGTTTTCATCGACAGAATCTCAATCTAGTGGCAGTGGGGGTAATTCTTCCTCATCAGCAAATGCAACTGGAAGCGGGAGTGGGAGTGGGTCTCAAACAGATGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

391

Amino Acids

43.64

Weight (kDa)

4.63

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	8 - 39	3.6e-11	zinc-ribbon
zf-RING_2	PF13639	246 - 288	9.8e-14	Ring finger domain
zf-C3HC4_2	PF13923	246 - 287	1.6e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	246 - 274	3.4e-09	RING-like zinc finger
zf-C3HC4	PF00097	247 - 287	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	261 - 288	1.4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	852
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	2 cut(s)	99, 1140
AclWI	GGATC	1 cut(s)	650
AcsI	RAATTY	4 cut(s)	155, 421, 730, 803
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	4 cut(s)	64, 65, 454, 622
AgsI	TTSAA	7 cut(s)	74, 329, 520, 555, 776, 1046, 1063
AjnI	CCWGG	1 cut(s)	616
AluBI	AGCT	6 cut(s)	20, 357, 376, 395, 704, 838
AluI	AGCT	6 cut(s)	20, 357, 376, 395, 704, 838
Alw26I	GTCTC	3 cut(s)	235, 299, 1161
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	2 cut(s)	613, 1055
ApeKI	GCWGC	4 cut(s)	17, 376, 395, 634
ApoI	RAATTY	4 cut(s)	155, 421, 730, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspS9I	GGNCC	3 cut(s)	161, 445, 614
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	64, 611, 824
AvaII	GGWCC	2 cut(s)	161, 445
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	4 cut(s)	29, 363, 382, 621
BccI	CCATC	9 cut(s)	113, 193, 536, 968, 974, 980, 986, 992, 998
BciT130I	CCWGG	1 cut(s)	618
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	3 cut(s)	235, 299, 1161
BfaI	CTAG	4 cut(s)	21, 129, 909, 1092
BfmI	CTRYAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	852
BisI	GCNGC	4 cut(s)	18, 377, 396, 635
BlsI	GCNGC	4 cut(s)	19, 378, 397, 636
Bme1390I	CCNGG	2 cut(s)	449, 618
Bme18I	GGWCC	2 cut(s)	161, 445
BmgT120I	GGNCC	3 cut(s)	161, 445, 614
BmiI	GGNNCC	5 cut(s)	124, 144, 163, 189, 446
BmrFI	CCNGG	2 cut(s)	449, 618
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	2 cut(s)	280, 416
BmuI	ACTGGG	1 cut(s)	848
BplI	GAGNNNNNCTC	2 cut(s)	1141, 1173
BpmI	CTGGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	1161
BsaJI	CCNNGG	4 cut(s)	295, 616, 827, 1052
BsaXI	ACNNNNNCTCC	2 cut(s)	1135, 1165
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 65, 454, 622
Bse1I	ACTGG	5 cut(s)	32, 318, 854, 949, 1138
Bse3DI	GCAATG	1 cut(s)	743
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	4 cut(s)	295, 616, 827, 1052
BseLI	CCNNNNNNNGG	4 cut(s)	64, 65, 454, 622
BseMI	GCAATG	1 cut(s)	743
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	5 cut(s)	32, 318, 854, 949, 1138
BseRI	GAGGAG	3 cut(s)	361, 364, 666
BseXI	GCAGC	4 cut(s)	29, 363, 382, 621
BseYI	CCCAGC	1 cut(s)	953
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	615, 1057
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	448, 680
BslFI	GGGAC	6 cut(s)	146, 452, 458, 464, 482, 488
BslI	CCNNNNNNNGG	4 cut(s)	64, 65, 454, 622
BsmAI	GTCTC	3 cut(s)	235, 299, 1161
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	6 cut(s)	146, 452, 458, 464, 482, 488
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	615, 1057
Bso31I	GGTCTC	1 cut(s)	1161
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	166, 655
Bsp19I	CCATGG	2 cut(s)	295, 827
BspACI	CCGC	2 cut(s)	99, 1140
BspANI	GGCC	2 cut(s)	615, 1057
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	5 cut(s)	124, 144, 163, 189, 446
BspMI	ACCTGC	1 cut(s)	852
BspPI	GGATC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	1161
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	743
BsrI	ACTGG	5 cut(s)	32, 318, 854, 949, 1138
BssECI	CCNNGG	4 cut(s)	295, 616, 827, 1052
BssMI	GATC	2 cut(s)	166, 655
BssT1I	CCWWGG	2 cut(s)	295, 827
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	2 cut(s)	715, 818
Bst6I	CTCTTC	1 cut(s)	954
BstC8I	GCNNGC	3 cut(s)	400, 797, 876
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	3 cut(s)	295, 827, 1052
BstKTI	GATC	2 cut(s)	169, 658
BstMAI	GTCTC	3 cut(s)	235, 299, 1161
BstMBI	GATC	2 cut(s)	166, 655
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 404, 701, 796, 858, 884
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	2 cut(s)	447, 616
BstSFI	CTRYAG	1 cut(s)	34
BstV1I	GCAGC	4 cut(s)	29, 363, 382, 621
BsuRI	GGCC	2 cut(s)	615, 1057
BtgI	CCRYGG	3 cut(s)	295, 827, 1052
BtsI	GCAGTG	3 cut(s)	579, 702, 1105
BtsIMutI	CAGTG	5 cut(s)	579, 702, 711, 942, 1105
BveI	ACCTGC	1 cut(s)	852
Cac8I	GCNNGC	3 cut(s)	400, 797, 876
Cfr13I	GGNCC	3 cut(s)	161, 445, 614
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	1034, 1069
CviAII	CATG	7 cut(s)	64, 296, 539, 792, 809, 828, 893
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	168, 657
DpnII	GATC	2 cut(s)	166, 655
Eam1104I	CTCTTC	1 cut(s)	954
EarI	CTCTTC	1 cut(s)	954
Eco130I	CCWWGG	2 cut(s)	295, 827
Eco24I	GRGCYC	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	1161
Eco47I	GGWCC	2 cut(s)	161, 445
Eco57I	CTGAAG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	2 cut(s)	295, 827
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	295, 827
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	7 cut(s)	67, 299, 542, 795, 812, 831, 896
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	6 cut(s)	146, 452, 458, 464, 482, 488
FatI	CATG	7 cut(s)	63, 295, 538, 791, 808, 827, 892
FauI	CCCGC	1 cut(s)	1133
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	18, 377, 396, 635
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	4 cut(s)	18, 377, 396, 635
FspBI	CTAG	4 cut(s)	21, 129, 909, 1092
GluI	GCNGC	4 cut(s)	18, 377, 396, 635
GsaI	CCCAGC	1 cut(s)	957
GsuI	CTGGAG	1 cut(s)	854
HaeIII	GGCC	2 cut(s)	615, 1057
HapII	CCGG	2 cut(s)	448, 680
Hin1II	CATG	7 cut(s)	67, 299, 542, 795, 812, 831, 896
HinfI	GANTC	6 cut(s)	149, 329, 413, 551, 896, 1082
HpaII	CCGG	2 cut(s)	448, 680
HphI	GGTGA	3 cut(s)	64, 611, 824
Hpy166II	GTNNAC	2 cut(s)	55, 227
Hpy188I	TCNGA	6 cut(s)	46, 154, 341, 412, 418, 427
Hpy188III	TCNNGA	4 cut(s)	140, 196, 623, 909
Hpy8I	GTNNAC	2 cut(s)	55, 227
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	2 cut(s)	336, 1032
HpyCH4III	ACNGT	2 cut(s)	715, 818
HpyCH4V	TGCA	5 cut(s)	637, 736, 795, 861, 1130
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 404, 701, 796, 858, 884
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	7 cut(s)	67, 299, 542, 795, 812, 831, 896
Kzo9I	GATC	2 cut(s)	166, 655
LmnI	GCTCC	2 cut(s)	193, 835
Lsp1109I	GCAGC	4 cut(s)	29, 363, 382, 621
LweI	GCATC	2 cut(s)	280, 416
MaeI	CTAG	4 cut(s)	21, 129, 909, 1092
MaeIII	GTNAC	3 cut(s)	715, 812, 920
MalI	GATC	2 cut(s)	168, 657
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	2 cut(s)	166, 655
MboII	GAAGA	6 cut(s)	20, 354, 362, 527, 971, 1104
MfeI	CAATTG	1 cut(s)	1171
MhlI	GDGCHC	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	723, 762
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	2 cut(s)	448, 680
MspR9I	CCNGG	2 cut(s)	449, 618
MunI	CAATTG	1 cut(s)	1171
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	6 cut(s)	90, 404, 701, 796, 858, 884
NciI	CCSGG	1 cut(s)	449
NcoI	CCATGG	2 cut(s)	295, 827
NdeII	GATC	2 cut(s)	166, 655
NlaIII	CATG	7 cut(s)	67, 299, 542, 795, 812, 831, 896
NlaIV	GGNNCC	5 cut(s)	124, 144, 163, 189, 446
NmuCI	GTSAC	2 cut(s)	715, 812
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	5 cut(s)	329, 413, 551, 896, 1082
PkrI	GCNGC	4 cut(s)	19, 378, 397, 636
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	953
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	5 cut(s)	124, 144, 163, 189, 446
PspPI	GGNCC	3 cut(s)	161, 445, 614
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	723, 762
SatI	GCNGC	4 cut(s)	18, 377, 396, 635
Sau3AI	GATC	2 cut(s)	166, 655
Sau96I	GGNCC	3 cut(s)	161, 445, 614
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	449, 618
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	280, 416
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	2 cut(s)	161, 445
SsiI	CCGC	2 cut(s)	99, 1140
SspMI	CTAG	4 cut(s)	21, 129, 909, 1092
StyD4I	CCNGG	2 cut(s)	447, 616
StyI	CCWWGG	2 cut(s)	295, 827
TaaI	ACNGT	2 cut(s)	715, 818
TaqI	TCGA	5 cut(s)	169, 255, 382, 391, 1076
TfiI	GAWTC	5 cut(s)	329, 413, 551, 896, 1082
Tru1I	TTAA	2 cut(s)	723, 762
Tru9I	TTAA	2 cut(s)	723, 762
TscAI	CASTG	5 cut(s)	586, 702, 718, 949, 1105
TseFI	GTSAC	2 cut(s)	715, 812
TseI	GCWGC	4 cut(s)	17, 376, 395, 634
Tsp45I	GTSAC	2 cut(s)	715, 812
TspDTI	ATGAA	8 cut(s)	92, 224, 527, 582, 797, 830, 897, 1062
TspGWI	ACGGA	2 cut(s)	247, 1041
TspRI	CASTG	5 cut(s)	586, 702, 718, 949, 1105
VpaK11BI	GGWCC	2 cut(s)	161, 445
XapI	RAATTY	4 cut(s)	155, 421, 730, 803
XbaI	TCTAGA	1 cut(s)	908
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	4 cut(s)	21, 129, 909, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.