Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004326

Physical Location & Seq

Genomic Coordinates Reverse (-)

13344595 .. 13346597

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTTATTGGTGCCGAGATCAAATGCCCCTTTTGCCAAAGCGGGTTTGTCGAGGAAATGAGCCGTGAGATTAATGGCGGCAGCAGTAGCAGTCTAAGGGAGGTTCAAGACCCTGAGATTGATTTTGGTACAGACCGTGCATTGTCTCTATGGGGTCCAATCTTGCTTGGAATGATGAGTAATCCTCGTAGACGTAGAAGGTTTAGGAGGACAGAGTTTGGTGTGGATAATGATGAGGTCAATGTATCTGATGATGTTGATGGAAATGACAGCGTCGATATTGATCGACATCATCATCGTCGTCATCGCCACAGGCAACAAGGTAGAGAGATTGATTTAGACAGAGAGTTTGAGTCTATCCTTAGGAGGAGACGGAGAAGCTCAGCTACTATATTGCAGTTGCTTCAGGGTATTCGTGCAGGGATTGCTTCTGAGTATGAGAGCTCGGATCGAGACCTGTTAAATCAATCAGCTGTTGTTCAGGGTTCAACGAGTTTGAATCAAAACCGGAACAATACTTCTCTTTCTGCAATTGGAGATTACTTTGTTGGATCCAGTTTAGACCATTTGCTTGAACATCTAGCTGATAATGATTCAATCAGGCACGGGAGTCTTCCAGCACGTAAAGAAGTTGTGGATAATCTCCCAACGGTTAAGATAAGTGAATCATTGCAGTGCTCGATTTGTTTGGATGATTTTGACAAAGGAAGTGAAGCTAAAGAGATGCCGTGTAAGCACAAGTTTCACATCCGGTGTATAGTACCGTGGCTCGAGCTTCACAGTTCATGTCCCGTGTGCCGATATGAACTCCCTCCTGATGATGAGACCAAGGTTAATCCTGTAAGACCGAGAACAAGAACTCTAGAGATCAACGTAAGTAATGAGAATGTGGAAGATGATGCAAGGAACAGTAATGTGAGCGAGAGAAGGTTCTCTTTTCCATGGCCGTTCAGCGGATTATTCTCTTCATCCTCTTCGTCATCCGCATCGGCCTCGGGGTCATCTCATCTCGGTGAGAACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

356

Amino Acids

40.21

Weight (kDa)

5.83

Isoelectric Point (pI)

67.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	4 - 35	3.4e-13	zinc-ribbon
zf-RING_2	PF13639	240 - 282	6.3e-14	Ring finger domain
zf-RING_11	PF17123	240 - 268	2.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	240 - 281	2.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	241 - 281	4.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	242 - 282	4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55530 AT1G55530 AT1G55530 AT3G13430 AT3G13430 AT3G13430 AT3G13430 AT4G26400 AT4G26400 AT5G56340
fragaria_vesca	FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930 FvH4_3g45930
malus_domestica	MD03G1001600.v1.1 MD11G1001300.v1.1
prunus_persica	Prupe.6G001500_v2.0.a1 Prupe.6G001500_v2.0.a1
pyrus_communis	pycom03g00160 pycom11g00150
rosa_chinensis	RchiOBHm_Chr5g0084041
rosa_laevigata	RLG00000037075
rosa_multiflora	Rmu_ssc0000372.1_g000084
rosa_roxburghii	Rroxscaffold_1G00000620
rosa_rugosa	Rorug05G0488500 Rorug05G0488500
rosa_samantha	Rh5AG541200 Rh5BG566500 Rh5CG588500 Rh5DG574900
rosa_wichuraiana	Rw5G050330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	235
AciI	CCGC	4 cut(s)	87, 123, 999, 1029
AclWI	GGATC	3 cut(s)	501, 591, 604
AcoI	YGGCCR	1 cut(s)	989
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	2 cut(s)	175, 807
AfiI	CCNNNNNNNGG	2 cut(s)	53, 998
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	5 cut(s)	152, 534, 544, 620, 642
AluBI	AGCT	8 cut(s)	8, 426, 431, 489, 518, 629, 761, 820
AluI	AGCT	8 cut(s)	8, 426, 431, 489, 518, 629, 761, 820
Alw21I	GWGCWC	2 cut(s)	491, 725
Alw26I	GTCTC	4 cut(s)	195, 409, 492, 863
AlwI	GGATC	3 cut(s)	501, 591, 604
Ama87I	CYCGRG	2 cut(s)	815, 1039
AoxI	GGCC	2 cut(s)	989, 1035
ApeKI	GCWGC	1 cut(s)	126
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AseI	ATTAAT	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	52, 1070
AvaI	CYCGRG	2 cut(s)	815, 1039
AvaII	GGWCC	1 cut(s)	200
AxyI	CCTNAGG	1 cut(s)	407
BamHI	GGATCC	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	491
BarI	GAAGNNNNNNTAC	2 cut(s)	415, 447
BbsI	GAAGAC	1 cut(s)	650
Bbv12I	GWGCWC	2 cut(s)	491, 725
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	3 cut(s)	93, 757, 976
BcgI	CGANNNNNNTGC	2 cut(s)	1020, 1054
BcoDI	GTCTC	4 cut(s)	195, 409, 492, 863
BfaI	CTAG	3 cut(s)	9, 626, 908
BisI	GCNGC	2 cut(s)	124, 127
BlpI	GCTNAGC	1 cut(s)	427
BlsI	GCNGC	2 cut(s)	125, 128
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	2 cut(s)	815, 1039
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	3 cut(s)	58, 201, 598
BmsI	GCATC	3 cut(s)	759, 934, 1040
BpiI	GAAGAC	1 cut(s)	650
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
Bpu1102I	GCTNAGC	1 cut(s)	427
BsaAI	YACGTR	1 cut(s)	668
BsaBI	GATNNNNATC	2 cut(s)	327, 333
BsaI	GGTCTC	2 cut(s)	492, 863
BsaJI	CCNNGG	4 cut(s)	809, 873, 986, 1038
BsaWI	WCCGGW	2 cut(s)	552, 795
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 998
Bse1I	ACTGG	2 cut(s)	47, 600
Bse21I	CCTNAGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	713
Bse8I	GATNNNNATC	2 cut(s)	327, 333
BseDI	CCNNGG	4 cut(s)	809, 873, 986, 1038
BseGI	GGATG	4 cut(s)	742, 792, 1013, 1025
BseJI	GATNNNNATC	2 cut(s)	327, 333
BseLI	CCNNNNNNNGG	2 cut(s)	53, 998
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	3 cut(s)	150, 441, 468
BseNI	ACTGG	2 cut(s)	47, 600
BseRI	GAGGAG	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	991, 1037
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	491, 725
BsiHKCI	CYCGRG	2 cut(s)	815, 1039
BsiSI	CCGG	2 cut(s)	553, 796
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	2 cut(s)	53, 998
BsmAI	GTCTC	4 cut(s)	195, 409, 492, 863
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	819
BsnI	GGCC	2 cut(s)	991, 1037
Bso31I	GGTCTC	2 cut(s)	492, 863
BsoBI	CYCGRG	2 cut(s)	815, 1039
Bsp1286I	GDGCHC	2 cut(s)	491, 725
Bsp143I	GATC	5 cut(s)	63, 328, 493, 596, 912
Bsp1720I	GCTNAGC	1 cut(s)	427
Bsp19I	CCATGG	1 cut(s)	986
BspACI	CCGC	4 cut(s)	87, 123, 999, 1029
BspANI	GGCC	2 cut(s)	991, 1037
BspCNI	CTCAG	3 cut(s)	151, 440, 469
BspLI	GGNNCC	3 cut(s)	58, 201, 598
BspPI	GGATC	3 cut(s)	501, 591, 604
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	2 cut(s)	492, 863
BsrDI	GCAATG	1 cut(s)	713
BsrI	ACTGG	2 cut(s)	47, 600
BssECI	CCNNGG	4 cut(s)	809, 873, 986, 1038
BssMI	GATC	5 cut(s)	63, 328, 493, 596, 912
BssT1I	CCWWGG	2 cut(s)	873, 986
Bst4CI	ACNGT	5 cut(s)	182, 697, 810, 827, 956
Bst6I	CTCTTC	2 cut(s)	1015, 1024
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	668
BstDEI	CTNAG	5 cut(s)	140, 159, 407, 427, 477
BstDSI	CCRYGG	2 cut(s)	809, 986
BstF5I	GGATG	4 cut(s)	742, 792, 1013, 1025
BstKTI	GATC	5 cut(s)	66, 331, 496, 599, 915
BstMAI	GTCTC	4 cut(s)	195, 409, 492, 863
BstMBI	GATC	5 cut(s)	63, 328, 493, 596, 912
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 132, 470, 778
BstNSI	RCATGY	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	991, 1037
BtgI	CCRYGG	2 cut(s)	809, 986
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	4 cut(s)	742, 792, 1013, 1025
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	1 cut(s)	725
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	174, 806
CviAII	CATG	3 cut(s)	25, 831, 987
CviQI	GTAC	2 cut(s)	174, 806
DdeI	CTNAG	5 cut(s)	140, 159, 407, 427, 477
DpnI	GATC	5 cut(s)	65, 330, 495, 598, 914
DpnII	GATC	5 cut(s)	63, 328, 493, 596, 912
EaeI	YGGCCR	1 cut(s)	989
Eam1104I	CTCTTC	2 cut(s)	1015, 1024
EarI	CTCTTC	2 cut(s)	1015, 1024
Ecl136II	GAGCTC	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	873, 986
Eco24I	GRGCYC	1 cut(s)	491
Eco31I	GGTCTC	2 cut(s)	492, 863
Eco47I	GGWCC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	434
Eco81I	CCTNAGG	1 cut(s)	407
Eco88I	CYCGRG	2 cut(s)	815, 1039
EcoICRI	GAGCTC	1 cut(s)	489
EcoT14I	CCWWGG	2 cut(s)	873, 986
EcoT38I	GRGCYC	1 cut(s)	491
ErhI	CCWWGG	2 cut(s)	873, 986
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	3 cut(s)	28, 834, 990
FaiI	YATR	8 cut(s)	26, 196, 437, 483, 803, 832, 849, 988
FalI	AAGNNNNNCTT	2 cut(s)	964, 996
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	3 cut(s)	24, 830, 986
FauI	CCCGC	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	124, 127
FokI	GGATG	4 cut(s)	749, 779, 1000, 1012
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	2 cut(s)	124, 127
FspBI	CTAG	3 cut(s)	9, 626, 908
GluI	GCNGC	2 cut(s)	124, 127
HaeIII	GGCC	2 cut(s)	991, 1037
HapII	CCGG	2 cut(s)	553, 796
HgaI	GACGC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	28, 834, 990
HinfI	GANTC	6 cut(s)	43, 398, 544, 638, 655, 710
HpaII	CCGG	2 cut(s)	553, 796
HphI	GGTGA	2 cut(s)	52, 1070
Hpy166II	GTNNAC	2 cut(s)	32, 236
Hpy188I	TCNGA	3 cut(s)	295, 478, 493
Hpy188III	TCNNGA	4 cut(s)	152, 497, 860, 908
Hpy8I	GTNNAC	2 cut(s)	32, 236
Hpy99I	CGWCG	2 cut(s)	323, 348
HpyAV	CCTTC	2 cut(s)	237, 966
HpyCH4III	ACNGT	5 cut(s)	182, 697, 810, 827, 956
HpyCH4IV	ACGT	3 cut(s)	238, 667, 918
HpyCH4V	TGCA	6 cut(s)	185, 442, 464, 575, 718, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 132, 470, 778
HpyF3I	CTNAG	5 cut(s)	140, 159, 407, 427, 477
HpySE526I	ACGT	3 cut(s)	238, 667, 918
Hsp92II	CATG	3 cut(s)	28, 834, 990
Kzo9I	GATC	5 cut(s)	63, 328, 493, 596, 912
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	3 cut(s)	759, 934, 1040
MaeI	CTAG	3 cut(s)	9, 626, 908
MaeII	ACGT	3 cut(s)	238, 667, 918
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	5 cut(s)	65, 330, 495, 598, 914
MboI	GATC	5 cut(s)	63, 328, 493, 596, 912
MboII	GAAGA	4 cut(s)	650, 950, 1002, 1011
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	2 cut(s)	491, 725
MluCI	AATT	1 cut(s)	576
MlyI	GAGTC	2 cut(s)	407, 664
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	9 cut(s)	91, 139, 240, 246, 274, 405, 867, 1027, 1048
MseI	TTAA	4 cut(s)	117, 506, 699, 879
MslI	CAYNNNNRTG	2 cut(s)	718, 1056
MspA1I	CMGCKG	2 cut(s)	518, 999
MspI	CCGG	2 cut(s)	553, 796
MunI	CAATTG	1 cut(s)	576
MwoI	GCNNNNNNNGC	4 cut(s)	78, 132, 470, 778
NcoI	CCATGG	1 cut(s)	986
NdeII	GATC	5 cut(s)	63, 328, 493, 596, 912
NlaIII	CATG	3 cut(s)	28, 834, 990
NlaIV	GGNNCC	3 cut(s)	58, 201, 598
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	28
PaeR7I	CTCGAG	1 cut(s)	815
PciI	ACATGT	1 cut(s)	24
PfeI	GAWTC	4 cut(s)	43, 544, 638, 710
PflFI	GACNNNGTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	125, 128
PleI	GAGTC	2 cut(s)	406, 663
PpsI	GAGTC	2 cut(s)	406, 663
Ppu21I	YACGTR	1 cut(s)	668
PscI	ACATGT	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	491
PspN4I	GGNNCC	3 cut(s)	58, 201, 598
PspPI	GGNCC	1 cut(s)	200
PspXI	VCTCGAGB	1 cut(s)	815
PsuI	RGATCY	1 cut(s)	596
PsyI	GACNNNGTC	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	175, 807
RsaNI	GTAC	2 cut(s)	174, 806
RseI	CAYNNNNRTG	2 cut(s)	718, 1056
SacI	GAGCTC	1 cut(s)	491
SaqAI	TTAA	4 cut(s)	117, 506, 699, 879
SatI	GCNGC	2 cut(s)	124, 127
Sau3AI	GATC	5 cut(s)	63, 328, 493, 596, 912
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	2 cut(s)	407, 664
SduI	GDGCHC	2 cut(s)	491, 725
SfaNI	GCATC	3 cut(s)	759, 934, 1040
Sfr274I	CTCGAG	1 cut(s)	815
SinI	GGWCC	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	815
SmiMI	CAYNNNNRTG	2 cut(s)	718, 1056
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	1 cut(s)	576
SsiI	CCGC	4 cut(s)	87, 123, 999, 1029
SspMI	CTAG	3 cut(s)	9, 626, 908
SstI	GAGCTC	1 cut(s)	491
StyI	CCWWGG	2 cut(s)	873, 986
TaaI	ACNGT	5 cut(s)	182, 697, 810, 827, 956
TaiI	ACGT	3 cut(s)	241, 670, 921
TaqI	TCGA	6 cut(s)	96, 321, 331, 496, 725, 816
TaqII	GACCGA	1 cut(s)	907
TasI	AATT	1 cut(s)	576
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	4 cut(s)	43, 544, 638, 710
Tru1I	TTAA	4 cut(s)	117, 506, 699, 879
Tru9I	TTAA	4 cut(s)	117, 506, 699, 879
TscAI	CASTG	1 cut(s)	725
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	819, 864, 1002
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	725
Tth111I	GACNNNGTC	1 cut(s)	317
Van91I	CCANNNNNTGG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	200
VspI	ATTAAT	1 cut(s)	117
XbaI	TCTAGA	1 cut(s)	907
XceI	RCATGY	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	3 cut(s)	9, 626, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.