AT1G55730

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
20831031 .. 20834628
3598 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55730.2

Sequence Viewer

Length: 1326 bp
ATGGGTTGTTGTAAAGTGCCAGCTCTTATTCAGGCCCAGGTAGAAATGGGGTTGGTTAATGATGTTGAGCACAAAAGCCTTTTTAGACGAGATACTGATTCCCCAGAAAGAAAAGCAGCTTCCTTGATGGAACAAGGATCACTTTCTGCAAGTTTTCGAGAATGCTCAACTAAAACACCTAATAACAGTGTGCTCCAGAGCTTCAAGATTGTGATTTTATCGAATAAACTTAATCTTTTGTTGCCTTTTGGTCCTCTGGCAATACTACTCCATTACTTGACAGATAATAAGGGATGGATCTTCTTATTGAGCTTAGTAGGCATCACACCATTAGCTGAACGTCTCGGATATGCCACCGAGCAATTAGCTTGTTACACTGGTTCAACTGTTGGAGGTCTCCTAAACGCTACATTTGGAAACGTGACAGAGCTGATCATATCGATTTTCGCTCTTAAAAGTGGAATGATACGTGTTGTACAGCTGACATTGCTCGGCTCGATACTTTCTAACATGTTACTTGTACTTGGCTGCGCCTTCTTTTGTGGCGGGCTTGTATTTTCCCAGAAAGAGCAAGTCTTTGACAAAGGTAATGCTGTTGTGAATTCGGGATTGCTTTTGATGGCTGTCATGGGACTACTCTTCCCCGCAGTTCTTCATTACACGCACAGTGAGGTTCATGCTGGGTCATCAGAGCTTGCTCTCTCAAGATTCAGCAGTTGCATAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAAAGAGCCAGCCGAGCTCTTATACCCCTCTCACCGAGGAAACTAACCAGAACGAAGAAACTTCAGACGATGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATTATCTGGCTTTCAATCTTGACGGCTTGGGTCTCTCTTCTTTCCGGCTATCTTGTTGATGCCATAGAGGGTGCTTCAGTCTCATGGAAGATACCAATCTCTTTTATCAGTGTCATCTTACTTCCTATAGTTGGGAATGCGGCCGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTGGGAGTGGCTATTGGATCCTCCATTCAGATTTCTATGTTCGCGGTTCCTTTTTGCGTGGTTATCGGATGGATGATGGGTGCCCAAATGGACCTAAATTTCCAGCTATTTGAGACGGCTACTCTGTTCATAACTGTTATTGTTGTAGCTTTCTTTCTCCAGGAAGGAACATCGAATTACTTCAAAGGATTGATGCTCATTCTTTGCTATTTGATAGTCGCCGCTAGTTTCTTTGTACACGAAGATCCTCATCAAGATGATATATAA

Protein Analysis

441

Amino Acids

48.1

Weight (kDa)

4.86

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 99 - 254 8e-22 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 289 - 430 8.4e-22 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1007
Acc36I ACCTGC 1 cut(s) 1007
AccB1I GGYRCC 2 cut(s) 1019, 1139
AccII CGCG 1 cut(s) 1103
AciI CCGC 5 cut(s) 546, 645, 1004, 1103, 1281
AclWI GGATC 7 cut(s) 145, 305, 833, 1059, 1071, 1084, 1298
AcoI YGGCCR 1 cut(s) 1005
AcsI RAATTY 2 cut(s) 601, 1156
AcuI CTGAAG 2 cut(s) 807, 924
AfaI GTAC 3 cut(s) 477, 522, 1296
AfiI CCNNNNNNNGG 1 cut(s) 995
AflIII ACRYGT 2 cut(s) 469, 510
AgsI TTSAA 4 cut(s) 205, 384, 879, 1243
AjnI CCWGG 2 cut(s) 36, 1218
Alw21I GWGCWC 3 cut(s) 72, 195, 779
Alw26I GTCTC 5 cut(s) 347, 401, 901, 949, 1166
AlwI GGATC 7 cut(s) 145, 305, 833, 1059, 1071, 1084, 1298
AoxI GGCC 2 cut(s) 33, 1005
ApeKI GCWGC 3 cut(s) 116, 528, 740
ApoI RAATTY 2 cut(s) 601, 1156
Asp700I GAANNNNTTC 1 cut(s) 1238
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 3 cut(s) 34, 251, 1150
AsuHPI GGTGA 1 cut(s) 784
AvaII GGWCC 2 cut(s) 251, 1150
BaeGI GKGCMC 1 cut(s) 1144
BamHI GGATCC 1 cut(s) 1076
BanI GGYRCC 2 cut(s) 1019, 1139
BanII GRGCYC 1 cut(s) 779
Bbv12I GWGCWC 3 cut(s) 72, 195, 779
BbvI GCAGC 3 cut(s) 128, 515, 727
BccI CCATC 6 cut(s) 121, 288, 613, 1031, 1122, 1129
BceAI ACGGC 2 cut(s) 903, 1191
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 2 cut(s) 38, 1220
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 5 cut(s) 347, 401, 901, 949, 1166
BfaI CTAG 1 cut(s) 1284
BfmI CTRYAG 1 cut(s) 990
BfuAI ACCTGC 1 cut(s) 1007
BglII AGATCT 1 cut(s) 846
BisI GCNGC 5 cut(s) 117, 529, 741, 1005, 1281
BlsI GCNGC 5 cut(s) 118, 530, 742, 1006, 1282
Bme1390I CCNGG 2 cut(s) 38, 1220
Bme18I GGWCC 2 cut(s) 251, 1150
BmgT120I GGNCC 3 cut(s) 34, 251, 1150
BmiI GGNNCC 4 cut(s) 1021, 1078, 1107, 1141
BmrFI CCNGG 2 cut(s) 38, 1220
BmsI GCATC 3 cut(s) 330, 913, 1242
BpmI CTGGAG 2 cut(s) 179, 1202
BpuEI CTTGAG 1 cut(s) 688
Bsa29I ATCGAT 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 470
BsaBI GATNNNNATC 3 cut(s) 837, 959, 1308
BsaI GGTCTC 2 cut(s) 401, 901
BsaJI CCNNGG 2 cut(s) 36, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 995
Bse1I ACTGG 2 cut(s) 382, 757
Bse3DI GCAATG 1 cut(s) 485
Bse8I GATNNNNATC 3 cut(s) 837, 959, 1308
BseBI CCWGG 2 cut(s) 38, 1220
BseCI ATCGAT 1 cut(s) 440
BseDI CCNNGG 2 cut(s) 36, 795
BseGI GGATG 3 cut(s) 299, 1133, 1137
BseJI GATNNNNATC 3 cut(s) 837, 959, 1308
BseLI CCNNNNNNNGG 1 cut(s) 995
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 1 cut(s) 834
BseNI ACTGG 2 cut(s) 382, 757
BseSI GKGCMC 1 cut(s) 1144
BseX3I CGGCCG 1 cut(s) 1005
BseXI GCAGC 3 cut(s) 128, 515, 727
BseYI CCCAGC 1 cut(s) 680
Bsh1236I CGCG 1 cut(s) 1103
Bsh1285I CGRYCG 1 cut(s) 1008
BshFI GGCC 2 cut(s) 35, 1007
BshNI GGYRCC 2 cut(s) 1019, 1139
BshVI ATCGAT 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 1008
BsiHKAI GWGCWC 3 cut(s) 72, 195, 779
BsiSI CCGG 1 cut(s) 909
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 1 cut(s) 995
BsmAI GTCTC 5 cut(s) 347, 401, 901, 949, 1166
BsmBI CGTCTC 2 cut(s) 347, 1166
BsmFI GGGAC 1 cut(s) 645
BsmI GAATGC 2 cut(s) 167, 1006
BsnI GGCC 2 cut(s) 35, 1007
Bso31I GGTCTC 2 cut(s) 401, 901
Bsp1286I GDGCHC 4 cut(s) 72, 195, 779, 1144
Bsp1407I TGTACA 2 cut(s) 475, 1294
Bsp143I GATC 8 cut(s) 137, 297, 432, 838, 846, 1051, 1076, 1303
BspACI CCGC 5 cut(s) 546, 645, 1004, 1103, 1281
BspANI GGCC 2 cut(s) 35, 1007
BspCNI CTCAG 1 cut(s) 835
BspDI ATCGAT 1 cut(s) 440
BspFNI CGCG 1 cut(s) 1103
BspLI GGNNCC 4 cut(s) 1021, 1078, 1107, 1141
BspMI ACCTGC 1 cut(s) 1007
BspPI GGATC 7 cut(s) 145, 305, 833, 1059, 1071, 1084, 1298
BspT107I GGYRCC 2 cut(s) 1019, 1139
BspTNI GGTCTC 2 cut(s) 401, 901
BsrDI GCAATG 1 cut(s) 485
BsrGI TGTACA 2 cut(s) 475, 1294
BsrI ACTGG 2 cut(s) 382, 757
BssECI CCNNGG 2 cut(s) 36, 795
BssMI GATC 8 cut(s) 137, 297, 432, 838, 846, 1051, 1076, 1303
Bst2UI CCWGG 2 cut(s) 38, 1220
Bst4CI ACNGT 4 cut(s) 188, 388, 668, 1195
Bst6I CTCTTC 2 cut(s) 644, 906
BstAUI TGTACA 2 cut(s) 475, 1294
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 5 cut(s) 21, 548, 696, 770, 1014
BstDEI CTNAG 2 cut(s) 313, 843
BstF5I GGATG 3 cut(s) 299, 1133, 1137
BstFNI CGCG 1 cut(s) 1103
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 8 cut(s) 140, 300, 435, 841, 849, 1054, 1079, 1306
BstMAI GTCTC 5 cut(s) 347, 401, 901, 949, 1166
BstMBI GATC 8 cut(s) 137, 297, 432, 838, 846, 1051, 1076, 1303
BstMCI CGRYCG 1 cut(s) 1008
BstMWI GCNNNNNNNGC 5 cut(s) 318, 487, 740, 774, 1013
BstNI CCWGG 2 cut(s) 38, 1220
BstNSI RCATGY 2 cut(s) 514, 1016
BstSCI CCNGG 2 cut(s) 36, 1218
BstSFI CTRYAG 1 cut(s) 990
BstSLI GKGCMC 1 cut(s) 1144
BstUI CGCG 1 cut(s) 1103
BstV1I GCAGC 3 cut(s) 128, 515, 727
BstX2I RGATCY 6 cut(s) 297, 838, 846, 1051, 1076, 1303
BstYI RGATCY 6 cut(s) 297, 838, 846, 1051, 1076, 1303
BstZI CGGCCG 1 cut(s) 1005
Bsu15I ATCGAT 1 cut(s) 440
BsuRI GGCC 2 cut(s) 35, 1007
BsuTUI ATCGAT 1 cut(s) 440
BtsCI GGATG 3 cut(s) 299, 1133, 1137
BtsIMutI CAGTG 4 cut(s) 193, 375, 673, 979
BveI ACCTGC 1 cut(s) 1007
Cac8I GCNNGC 5 cut(s) 21, 548, 696, 770, 1014
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 3 cut(s) 34, 251, 1150
ClaI ATCGAT 1 cut(s) 440
Csp6I GTAC 3 cut(s) 476, 521, 1295
CviAII CATG 7 cut(s) 511, 628, 677, 948, 1013, 1027, 1036
CviQI GTAC 3 cut(s) 476, 521, 1295
DdeI CTNAG 2 cut(s) 313, 843
DpnI GATC 8 cut(s) 139, 299, 434, 840, 848, 1053, 1078, 1305
DpnII GATC 8 cut(s) 137, 297, 432, 838, 846, 1051, 1076, 1303
EaeI YGGCCR 1 cut(s) 1005
EagI CGGCCG 1 cut(s) 1005
Eam1104I CTCTTC 2 cut(s) 644, 906
EarI CTCTTC 2 cut(s) 644, 906
Ecl136II GAGCTC 1 cut(s) 777
EclXI CGGCCG 1 cut(s) 1005
Eco24I GRGCYC 1 cut(s) 779
Eco31I GGTCTC 2 cut(s) 401, 901
Eco47I GGWCC 2 cut(s) 251, 1150
Eco52I CGGCCG 1 cut(s) 1005
Eco53kI GAGCTC 1 cut(s) 777
Eco57I CTGAAG 2 cut(s) 807, 924
EcoICRI GAGCTC 1 cut(s) 777
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 36, 1218
EcoT38I GRGCYC 1 cut(s) 779
Esp3I CGTCTC 2 cut(s) 347, 1166
FaeI CATG 7 cut(s) 514, 631, 680, 951, 1016, 1030, 1039
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 1 cut(s) 645
FatI CATG 7 cut(s) 510, 627, 676, 947, 1012, 1026, 1035
FauI CCCGC 2 cut(s) 539, 652
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 5 cut(s) 117, 529, 741, 1005, 1281
FokI GGATG 3 cut(s) 306, 1140, 1144
FriOI GRGCYC 1 cut(s) 779
Fsp4HI GCNGC 5 cut(s) 117, 529, 741, 1005, 1281
FspBI CTAG 1 cut(s) 1284
GlaI GCGC 1 cut(s) 532
GluI GCNGC 5 cut(s) 117, 529, 741, 1005, 1281
GsaI CCCAGC 1 cut(s) 684
GsuI CTGGAG 2 cut(s) 179, 1202
HaeIII GGCC 2 cut(s) 35, 1007
HapII CCGG 1 cut(s) 909
HhaI GCGC 1 cut(s) 533
Hin1II CATG 7 cut(s) 514, 631, 680, 951, 1016, 1030, 1039
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HinfI GANTC 2 cut(s) 98, 708
HpaII CCGG 1 cut(s) 909
HphI GGTGA 1 cut(s) 784
Hpy166II GTNNAC 1 cut(s) 1297
Hpy188I TCNGA 5 cut(s) 347, 691, 826, 1089, 1127
Hpy188III TCNNGA 8 cut(s) 158, 196, 205, 606, 705, 842, 883, 1313
Hpy8I GTNNAC 1 cut(s) 1297
HpyAV CCTTC 2 cut(s) 544, 1217
HpyCH4III ACNGT 4 cut(s) 188, 388, 668, 1195
HpyCH4IV ACGT 3 cut(s) 340, 420, 469
HpyCH4V TGCA 3 cut(s) 149, 720, 1016
HpyF10VI GCNNNNNNNGC 5 cut(s) 318, 487, 740, 774, 1013
HpyF3I CTNAG 2 cut(s) 313, 843
HpySE526I ACGT 3 cut(s) 340, 420, 469
Hsp92II CATG 7 cut(s) 514, 631, 680, 951, 1016, 1030, 1039
HspAI GCGC 1 cut(s) 531
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 8 cut(s) 137, 297, 432, 838, 846, 1051, 1076, 1303
LmnI GCTCC 1 cut(s) 198
Lsp1109I GCAGC 3 cut(s) 128, 515, 727
LweI GCATC 3 cut(s) 330, 913, 1242
MaeI CTAG 1 cut(s) 1284
MaeII ACGT 3 cut(s) 340, 420, 469
MaeIII GTNAC 3 cut(s) 371, 421, 513
MalI GATC 8 cut(s) 139, 299, 434, 840, 848, 1053, 1078, 1305
MboI GATC 8 cut(s) 137, 297, 432, 838, 846, 1051, 1076, 1303
MboII GAAGA 8 cut(s) 292, 631, 644, 827, 848, 893, 964, 1313
MflI RGATCY 6 cut(s) 297, 838, 846, 1051, 1076, 1303
MhlI GDGCHC 4 cut(s) 72, 195, 779, 1144
MluCI AATT 4 cut(s) 362, 601, 1156, 1234
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 9 cut(s) 264, 386, 664, 758, 790, 798, 925, 1090, 1317
MroXI GAANNNNTTC 1 cut(s) 1238
MseI TTAA 4 cut(s) 57, 231, 453, 761
MslI CAYNNNNRTG 2 cut(s) 1017, 1314
MspA1I CMGCKG 1 cut(s) 481
MspI CCGG 1 cut(s) 909
MspR9I CCNGG 2 cut(s) 38, 1220
Mva1269I GAATGC 2 cut(s) 167, 1006
MvaI CCWGG 2 cut(s) 38, 1220
MvnI CGCG 1 cut(s) 1103
MwoI GCNNNNNNNGC 5 cut(s) 318, 487, 740, 774, 1013
NdeII GATC 8 cut(s) 137, 297, 432, 838, 846, 1051, 1076, 1303
NlaIII CATG 7 cut(s) 514, 631, 680, 951, 1016, 1030, 1039
NlaIV GGNNCC 4 cut(s) 1021, 1078, 1107, 1141
NmeAIII GCCGAG 3 cut(s) 471, 798, 1033
NmuCI GTSAC 1 cut(s) 421
NspI RCATGY 2 cut(s) 514, 1016
PaeI GCATGC 1 cut(s) 1016
PaqCI CACCTGC 1 cut(s) 1007
PciI ACATGT 1 cut(s) 510
PctI GAATGC 2 cut(s) 167, 1006
PdmI GAANNNNTTC 1 cut(s) 1238
PfeI GAWTC 2 cut(s) 98, 708
PfoI TCCNGGA 1 cut(s) 1218
PkrI GCNGC 5 cut(s) 118, 530, 742, 1006, 1282
Ppu21I YACGTR 1 cut(s) 470
PscI ACATGT 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 779
Psp6I CCWGG 2 cut(s) 36, 1218
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 2 cut(s) 36, 1218
PspN4I GGNNCC 4 cut(s) 1021, 1078, 1107, 1141
PspPI GGNCC 3 cut(s) 34, 251, 1150
PsuI RGATCY 6 cut(s) 297, 838, 846, 1051, 1076, 1303
PvuII CAGCTG 1 cut(s) 481
RsaI GTAC 3 cut(s) 477, 522, 1296
RsaNI GTAC 3 cut(s) 476, 521, 1295
RseI CAYNNNNRTG 2 cut(s) 1017, 1314
SacI GAGCTC 1 cut(s) 779
SaqAI TTAA 4 cut(s) 57, 231, 453, 761
SatI GCNGC 5 cut(s) 117, 529, 741, 1005, 1281
Sau3AI GATC 8 cut(s) 137, 297, 432, 838, 846, 1051, 1076, 1303
Sau96I GGNCC 3 cut(s) 34, 251, 1150
ScrFI CCNGG 2 cut(s) 38, 1220
SduI GDGCHC 4 cut(s) 72, 195, 779, 1144
SfaNI GCATC 3 cut(s) 330, 913, 1242
SfcI CTRYAG 1 cut(s) 990
SinI GGWCC 2 cut(s) 251, 1150
SmiMI CAYNNNNRTG 2 cut(s) 1017, 1314
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
SphI GCATGC 1 cut(s) 1016
Sse9I AATT 4 cut(s) 362, 601, 1156, 1234
SsiI CCGC 5 cut(s) 546, 645, 1004, 1103, 1281
SspMI CTAG 1 cut(s) 1284
SstI GAGCTC 1 cut(s) 779
StyD4I CCNGG 2 cut(s) 36, 1218
TaaI ACNGT 4 cut(s) 188, 388, 668, 1195
TaiI ACGT 3 cut(s) 343, 423, 472
TaqI TCGA 5 cut(s) 157, 221, 440, 497, 1232
TasI AATT 4 cut(s) 362, 601, 1156, 1234
TatI WGTACW 3 cut(s) 475, 520, 1294
TauI GCSGC 2 cut(s) 1007, 1283
TfiI GAWTC 2 cut(s) 98, 708
Tru1I TTAA 4 cut(s) 57, 231, 453, 761
Tru9I TTAA 4 cut(s) 57, 231, 453, 761
TscAI CASTG 4 cut(s) 193, 382, 673, 979
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 3 cut(s) 116, 528, 740
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 5 cut(s) 644, 665, 849, 1052, 1177
TspRI CASTG 4 cut(s) 193, 382, 673, 979
VpaK11BI GGWCC 2 cut(s) 251, 1150
XapI RAATTY 2 cut(s) 601, 1156
XceI RCATGY 2 cut(s) 514, 1016
XmnI GAANNNNTTC 1 cut(s) 1238
XspI CTAG 1 cut(s) 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.