Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002198

Physical Location & Seq

Genomic Coordinates Forward (+)

10683015 .. 10689101

Gene Structure 6087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1123100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGATCAACACAGCCCAAATCAGTGTTTGAGTTCGAGGATCAGAGCCTAGTTGGGGGTGAGAAACATTCATTGGATGAGGCTCCCCTCAGGGATCTTTATTCTGGTGGTGCAAATGACTGTTGTCCCCATGTCATGAAGAATAGTGTGGTCGATAGCATCAGGATTGTAGTTTTCTCTGCCAAAATTAATTTGCTCATGCCTTTTGGCCCGTTAGCAATCGTGGTTGATAAATTAACCGGTCATCATGGTTGGGTCTTTCTTTTAAGCTTGTTGGGAATCATACCTCTGGCTGAGCGATTAGGGTATGCAACGGAGCAACTGGCTTGCTATACTGGACCAACAGTTGGAGGTCTTTTAAATGCCACCTTTGGAAACGCAACAGAATTGATAATATCAATTTATGCTCTGAAAAGAGGCATGATTCGTGTTGTTCAACAATCCTTACTAGGCTCAATCCTATCGAACATGTTGCTCGTGCTTGGATGCGCATTCTTTGCTGGTGGACTTGTGCATTCACACAGGGAGCAAGTGTTCAACAAGGCAACTTCTGGAGTGAACTCTGGATTGCTATTGATGGCAGTCATGGGTCTGCTCTTTCCAGCAGTACTGCACTCTACTCGGACAGAGTTGCACTATGGGAAGTCTGAGTTATCTCTTTCGAGATTCACTAGCTGCATTATGCTCGTCGCCTATGCTTCATATCTGTTTTTTCAATTGAGAAGCCAGCATAATTTATATATTCCAGTTGATCAGTCAGAGAATCATACTGAAGAAAATTCAGACGATGAAGAGGCTCCTGAGATCTCTAAGTGGGAATCCATAATATGGCTATCAATTCTAACCTTGGTGATTTCAGTCCTCTCGGAATATTTAGTTAATGCTATAGAGGGTGCATCTGTTGCAATGAGCATCCCAGTTGCCTTTATTAGTGTTATTTTGCTCCCAATTGTTGGGAACGCAGCAGAGCATGCCGGTGCTGTTATGTTCGCCATGAAAGACAAGCTTGATATAACTTTAGGAGTGGCAATTGGCTCATCAACCCAGATATCTATGTTTGGAATTCCGTTTTGTGTGGTGGTTGGGTGGTTCATGGGGTGCCCTATGGACTTAGATTTCCAACTGTTTGAGACAGCGACACTTTTCCTAACTGTTCTGGTGGTAGCCTTCATGCTGCAGGAGGGAACATCTAATTACTTCAAAGGACTAATGCTCATTCTTTGCTACATTATCGTCGCTGCGAGCTTCTTTGTACATAGAGATCCTAAAGCGATACAGGATAAGCCCCAGAACCCGAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

435

Amino Acids

47.33

Weight (kDa)

5.43

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	84 - 240	9.9e-24	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	274 - 416	3.1e-21	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55730 AT1G55730 AT3G13320
fragaria_vesca	FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200
malus_domestica	MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1
prunus_persica	Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1
pyrus_communis	pycom03g03100 pycom11g03540
rosa_chinensis	RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081
rosa_laevigata	RLG00000020827 RLG00000036528
rosa_multiflora	Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006540 Rroxscaffold_2G00093860
rosa_rugosa	Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100
rosa_samantha	Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700
rosa_wichuraiana	Rw2G042100 Rw5G045760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	1098
AccB7I	CCANNNNNTGG	3 cut(s)	347, 828, 953
AclWI	GGATC	4 cut(s)	13, 48, 102, 1256
AcsI	RAATTY	2 cut(s)	778, 1062
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	2 cut(s)	609, 1254
AfiI	CCNNNNNNNGG	4 cut(s)	55, 347, 828, 953
AflIII	ACRYGT	1 cut(s)	468
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	437, 538, 716, 1201
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AloI	GAACNNNNNNTCC	2 cut(s)	518, 550
AluBI	AGCT	4 cut(s)	270, 675, 1006, 1245
AluI	AGCT	4 cut(s)	270, 675, 1006, 1245
Alw26I	GTCTC	1 cut(s)	1124
AlwI	GGATC	4 cut(s)	13, 48, 102, 1256
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	4 cut(s)	675, 962, 1174, 1238
ApoI	RAATTY	2 cut(s)	778, 1062
AseI	ATTAAT	1 cut(s)	189
AsiGI	ACCGGT	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	209, 338
AsuHPI	GGTGA	2 cut(s)	71, 862
AvaII	GGWCC	1 cut(s)	338
AxyI	CCTNAGG	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	1103
BanI	GGYRCC	1 cut(s)	1098
BauI	CACGAG	1 cut(s)	476
BbvI	GCAGC	4 cut(s)	662, 974, 1161, 1225
BccI	CCATC	1 cut(s)	571
BcgI	CGANNNNNNTGC	6 cut(s)	454, 488, 602, 636, 667, 701
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	1124
BfaI	CTAG	3 cut(s)	50, 449, 672
BfmI	CTRYAG	2 cut(s)	885, 1175
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	4 cut(s)	676, 963, 1175, 1239
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	4 cut(s)	677, 964, 1176, 1240
BmcAI	AGTACT	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	209, 338
BmiI	GGNNCC	3 cut(s)	84, 798, 1100
BmrI	ACTGGG	1 cut(s)	911
BmsI	GCATC	4 cut(s)	168, 476, 905, 921
BmuI	ACTGGG	1 cut(s)	911
BoxI	GACNNNNGTC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	846
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 347, 828, 953
Bse118I	RCCGGY	2 cut(s)	239, 974
Bse1I	ACTGG	4 cut(s)	327, 340, 746, 917
Bse21I	CCTNAGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	912
BseDI	CCNNGG	1 cut(s)	846
BseGI	GGATG	3 cut(s)	82, 491, 912
BseLI	CCNNNNNNNGG	4 cut(s)	55, 347, 828, 953
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	4 cut(s)	103, 285, 639, 792
BseNI	ACTGG	4 cut(s)	327, 340, 746, 917
BseSI	GKGCMC	1 cut(s)	1103
BseXI	GCAGC	4 cut(s)	662, 974, 1161, 1225
BsgI	GTGCAG	1 cut(s)	596
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	1098
BshTI	ACCGGT	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	240, 975
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	4 cut(s)	55, 347, 828, 953
BsmAI	GTCTC	1 cut(s)	1124
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	2 cut(s)	491, 514
BsnI	GGCC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	1103
Bsp1407I	TGTACA	1 cut(s)	1252
Bsp143I	GATC	6 cut(s)	5, 40, 94, 751, 804, 1261
Bsp1720I	GCTNAGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	4 cut(s)	102, 286, 640, 793
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	84, 798, 1100
BspMAI	CTGCAG	1 cut(s)	1179
BspPI	GGATC	4 cut(s)	13, 48, 102, 1256
BspT107I	GGYRCC	1 cut(s)	1098
BsrDI	GCAATG	1 cut(s)	912
BsrFI	RCCGGY	2 cut(s)	239, 974
BsrGI	TGTACA	1 cut(s)	1252
BsrI	ACTGG	4 cut(s)	327, 340, 746, 917
BssAI	RCCGGY	2 cut(s)	239, 974
BssECI	CCNNGG	1 cut(s)	846
BssMI	GATC	6 cut(s)	5, 40, 94, 751, 804, 1261
BssSI	CACGAG	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	846
Bst2BI	CACGAG	1 cut(s)	476
Bst4CI	ACNGT	4 cut(s)	122, 346, 1125, 1153
Bst6I	CTCTTC	1 cut(s)	786
BstAPI	GCANNNNNTGC	3 cut(s)	497, 902, 971
BstAUI	TGTACA	1 cut(s)	1252
BstC8I	GCNNGC	4 cut(s)	328, 728, 972, 1243
BstDEI	CTNAG	6 cut(s)	89, 294, 648, 801, 810, 1111
BstF5I	GGATG	3 cut(s)	82, 491, 912
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	6 cut(s)	8, 43, 97, 754, 807, 1264
BstMAI	GTCTC	1 cut(s)	1124
BstMBI	GATC	6 cut(s)	5, 40, 94, 751, 804, 1261
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 902, 971
BstNSI	RCATGY	2 cut(s)	472, 974
BstPAI	GACNNNNGTC	1 cut(s)	123
BstSFI	CTRYAG	2 cut(s)	885, 1175
BstSLI	GKGCMC	1 cut(s)	1103
BstV1I	GCAGC	4 cut(s)	662, 974, 1161, 1225
BstX2I	RGATCY	3 cut(s)	94, 804, 1261
BstYI	RGATCY	3 cut(s)	94, 804, 1261
Bsu36I	CCTNAGG	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	82, 491, 912
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	4 cut(s)	328, 728, 972, 1243
CciI	TCATGA	1 cut(s)	135
CfoI	GCGC	1 cut(s)	491
Cfr10I	RCCGGY	2 cut(s)	239, 974
Cfr13I	GGNCC	2 cut(s)	209, 338
Csp6I	GTAC	2 cut(s)	608, 1253
CspAI	ACCGGT	1 cut(s)	239
CviQI	GTAC	2 cut(s)	608, 1253
DdeI	CTNAG	6 cut(s)	89, 294, 648, 801, 810, 1111
DpnI	GATC	6 cut(s)	7, 42, 96, 753, 806, 1263
DpnII	GATC	6 cut(s)	5, 40, 94, 751, 804, 1261
DraI	TTTAAA	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	846
Eco32I	GATATC	1 cut(s)	1050
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	792
Eco81I	CCTNAGG	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	1062
EcoRV	GATATC	1 cut(s)	1050
EcoT14I	CCWWGG	1 cut(s)	846
ErhI	CCWWGG	1 cut(s)	846
FalI	AAGNNNNNCTT	2 cut(s)	990, 1022
FaqI	GGGAC	1 cut(s)	111
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	4 cut(s)	676, 963, 1175, 1239
FokI	GGATG	3 cut(s)	89, 498, 899
Fsp4HI	GCNGC	4 cut(s)	676, 963, 1175, 1239
FspAI	RTGCGCAY	1 cut(s)	490
FspBI	CTAG	3 cut(s)	50, 449, 672
FspI	TGCGCA	1 cut(s)	490
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	4 cut(s)	676, 963, 1175, 1239
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	240, 975
HhaI	GCGC	1 cut(s)	491
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HindIII	AAGCTT	2 cut(s)	268, 1004
HinfI	GANTC	5 cut(s)	279, 424, 666, 763, 818
HpaII	CCGG	2 cut(s)	240, 975
HphI	GGTGA	2 cut(s)	71, 862
Hpy166II	GTNNAC	2 cut(s)	506, 559
Hpy188I	TCNGA	7 cut(s)	45, 411, 624, 649, 760, 784, 868
Hpy188III	TCNNGA	6 cut(s)	136, 163, 552, 564, 663, 800
Hpy8I	GTNNAC	2 cut(s)	506, 559
Hpy99I	CGWCG	2 cut(s)	692, 1238
HpyAV	CCTTC	1 cut(s)	1177
HpyCH4III	ACNGT	4 cut(s)	122, 346, 1125, 1153
HpyCH4V	TGCA	9 cut(s)	113, 311, 514, 613, 634, 678, 896, 905, 1177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 902, 971
HpyF3I	CTNAG	6 cut(s)	89, 294, 648, 801, 810, 1111
HspAI	GCGC	1 cut(s)	489
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	6 cut(s)	5, 40, 94, 751, 804, 1261
LmnI	GCTCC	5 cut(s)	88, 316, 526, 802, 948
Lsp1109I	GCAGC	4 cut(s)	662, 974, 1161, 1225
LweI	GCATC	4 cut(s)	168, 476, 905, 921
MaeI	CTAG	3 cut(s)	50, 449, 672
MalI	GATC	6 cut(s)	7, 42, 96, 753, 806, 1263
MboI	GATC	6 cut(s)	5, 40, 94, 751, 804, 1261
MboII	GAAGA	3 cut(s)	151, 785, 803
MfeI	CAATTG	3 cut(s)	716, 948, 1029
MflI	RGATCY	3 cut(s)	94, 804, 1261
MhlI	GDGCHC	1 cut(s)	1103
MmeI	TCCRAC	2 cut(s)	328, 1144
MseI	TTAA	5 cut(s)	189, 236, 266, 359, 879
MslI	CAYNNNNRTG	1 cut(s)	975
MspI	CCGG	2 cut(s)	240, 975
MunI	CAATTG	3 cut(s)	716, 948, 1029
Mva1269I	GAATGC	2 cut(s)	491, 514
MwoI	GCNNNNNNNGC	3 cut(s)	497, 902, 971
NdeII	GATC	6 cut(s)	5, 40, 94, 751, 804, 1261
NlaIV	GGNNCC	3 cut(s)	84, 798, 1100
NsbI	TGCGCA	1 cut(s)	490
NspI	RCATGY	2 cut(s)	472, 974
PaeI	GCATGC	1 cut(s)	974
PagI	TCATGA	1 cut(s)	135
PciI	ACATGT	1 cut(s)	468
PctI	GAATGC	2 cut(s)	491, 514
PfeI	GAWTC	5 cut(s)	279, 424, 666, 763, 818
PflMI	CCANNNNNTGG	3 cut(s)	347, 828, 953
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	677, 964, 1176, 1240
PscI	ACATGT	1 cut(s)	468
PshAI	GACNNNNGTC	1 cut(s)	123
PshBI	ATTAAT	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	84, 798, 1100
PspPI	GGNCC	2 cut(s)	209, 338
PstI	CTGCAG	1 cut(s)	1179
PsuI	RGATCY	3 cut(s)	94, 804, 1261
RsaI	GTAC	2 cut(s)	609, 1254
RsaNI	GTAC	2 cut(s)	608, 1253
RseI	CAYNNNNRTG	1 cut(s)	975
SaqAI	TTAA	5 cut(s)	189, 236, 266, 359, 879
SatI	GCNGC	4 cut(s)	676, 963, 1175, 1239
Sau3AI	GATC	6 cut(s)	5, 40, 94, 751, 804, 1261
Sau96I	GGNCC	2 cut(s)	209, 338
ScaI	AGTACT	1 cut(s)	609
SduI	GDGCHC	1 cut(s)	1103
SetI	ASST	8 cut(s)	272, 289, 355, 371, 677, 848, 1008, 1247
SfaNI	GCATC	4 cut(s)	168, 476, 905, 921
SfcI	CTRYAG	2 cut(s)	885, 1175
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	975
SphI	GCATGC	1 cut(s)	974
SspI	AATATT	1 cut(s)	872
SspMI	CTAG	3 cut(s)	50, 449, 672
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	4 cut(s)	122, 346, 1125, 1153
TaqI	TCGA	4 cut(s)	36, 153, 464, 662
TatI	WGTACW	2 cut(s)	607, 1252
TfiI	GAWTC	5 cut(s)	279, 424, 666, 763, 818
Tru1I	TTAA	5 cut(s)	189, 236, 266, 359, 879
Tru9I	TTAA	5 cut(s)	189, 236, 266, 359, 879
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	4 cut(s)	675, 962, 1174, 1238
TspDTI	ATGAA	7 cut(s)	60, 152, 690, 804, 1010, 1081, 1159
TspGWI	ACGGA	2 cut(s)	329, 1056
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	3 cut(s)	347, 828, 953
VpaK11BI	GGWCC	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	2 cut(s)	778, 1062
XceI	RCATGY	2 cut(s)	472, 974
XspI	CTAG	3 cut(s)	50, 449, 672
ZrmI	AGTACT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.