Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012066.1

Orthogroup ID

OG0002198

Physical Location & Seq

Genomic Coordinates Reverse (-)

4951 .. 9039

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012066.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atggaaattgacaaggttaaggatccagccacagttaaattacattcgcaagttgagatggggtcgatggagctcaagtcaatattgggatatgatgatcagggcttagttgctgctcctgagaaaaaatcttcggatgagcctcccctcaaagttctatattctagtggttcaggaagctttaatcgcaaggtcatgaggaatactgtggttcatagcatcagaactgtagttttctcttcaagacttaacttgctcatgccttttggcccattagcaatcttagttcagactttgactggccatcatggctgggtcttccttctaagcttgttgggcatcatacctttggctgagcggttaggatatgctacagagcagctggcttgctacacaggacctacagttggaggccttctaaatgccacttttggaaatgccacagaattgataatctcaatatatgctttgagaaatggcatgattcgcgttgttcaacagtctttactgggctcaatcttgtcaaacatgttgctagtacttggatgtgcattctttgctggtggactcgtgttttctaagaggccacaagtgttcaacaagccaactgctgccgtgaattcgggattgctgttgatggcagtcatgggtcttctccttccagctttacttcacactactcacacagagttgcactttgggaagtctgcactagccctttcaaggtttactagctgcattatgcttgtggcatatgcttcctatctgttttttcagctgaagagccagcggagtctatatgtcccagttgatgagcagggggaggagattcacagtgatgccagtgatgatgatgacgaggttcctgaaatctctaagtgggaatccataatttggctcactattctaactgcatggatttcaatcctttcagaatatttagttaacgcgatagagggtgcgtctgttgcactgaatattcctgtagcgtttatcagtgttattttgctcccaattgttgggaacgcagcagagcatgcaggtgctgttatgtttgccatgaaagacaagcttgatataactttgggagtggccataggttcatcaacccagatatctatgtttggaattcccttttgtgtgatggttgggtggataatgggggtccctatggacttgaatttccaactgtttgagacagccacgcttttcataaccgttctggtggtagctttcatgctacaggagggaacttccaactactttaaaggaataatgctcattctttgttacattattgttgctgcaagtttctttgtacatatagaccctactgcaatacaggacaagcccccggaaacaaaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

456

Amino Acids

49.6

Weight (kDa)

5.5

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55730 AT1G55730 AT3G13320
fragaria_vesca	FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200
malus_domestica	MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1
prunus_persica	Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1
pyrus_communis	pycom03g03100 pycom11g03540
rosa_chinensis	RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081
rosa_laevigata	RLG00000020827 RLG00000036528
rosa_multiflora	Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006540 Rroxscaffold_2G00093860
rosa_rugosa	Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100
rosa_samantha	Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700
rosa_wichuraiana	Rw2G042100 Rw5G045760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1031
Acc36I	ACCTGC	1 cut(s)	1031
AccB7I	CCANNNNNTGG	2 cut(s)	894, 1019
AccBSI	CCGCTC	1 cut(s)	358
AccII	CGCG	2 cut(s)	489, 950
AciI	CCGC	2 cut(s)	358, 790
AclWI	GGATC	2 cut(s)	17, 30
AcoI	YGGCCR	2 cut(s)	301, 1092
AcsI	RAATTY	3 cut(s)	619, 1128, 1180
AcuI	CTGAAG	1 cut(s)	800
AfaI	GTAC	2 cut(s)	540, 1320
AfiI	CCNNNNNNNGG	4 cut(s)	407, 723, 894, 1019
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	6 cut(s)	243, 497, 598, 723, 924, 1180
AluBI	AGCT	9 cut(s)	73, 180, 330, 382, 665, 735, 778, 1072, 1232
AluI	AGCT	9 cut(s)	73, 180, 330, 382, 665, 735, 778, 1072, 1232
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	1190
AlwI	GGATC	2 cut(s)	17, 30
AlwNI	CAGNNNCTG	1 cut(s)	1046
AoxI	GGCC	5 cut(s)	268, 301, 412, 584, 1092
ApeKI	GCWGC	6 cut(s)	113, 379, 611, 735, 1028, 1304
ApoI	RAATTY	3 cut(s)	619, 1128, 1180
AspS9I	GGNCC	3 cut(s)	269, 398, 1165
AsuC2I	CCSGG	1 cut(s)	1355
AvaII	GGWCC	2 cut(s)	398, 1165
BalI	TGGCCA	2 cut(s)	303, 1094
BamHI	GGATCC	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	75, 515
BauI	CACGAG	1 cut(s)	569
BbsI	GAAGAC	2 cut(s)	310, 644
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	6 cut(s)	100, 391, 598, 722, 1040, 1291
BccI	CCATC	5 cut(s)	52, 61, 312, 631, 1138
BceAI	ACGGC	1 cut(s)	599
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	1355
BcoDI	GTCTC	1 cut(s)	1190
BfaI	CTAG	4 cut(s)	165, 536, 713, 732
BfmI	CTRYAG	5 cut(s)	228, 372, 402, 984, 1241
BfuAI	ACCTGC	1 cut(s)	1031
BglI	GCCNNNNNGGC	1 cut(s)	309
BisI	GCNGC	6 cut(s)	114, 380, 612, 736, 1029, 1305
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	6 cut(s)	115, 381, 613, 737, 1030, 1306
BmcAI	AGTACT	1 cut(s)	540
Bme1390I	CCNGG	1 cut(s)	1355
Bme18I	GGWCC	2 cut(s)	398, 1165
BmgT120I	GGNCC	3 cut(s)	269, 398, 1165
BmiI	GGNNCC	4 cut(s)	24, 864, 1166, 1167
BmrFI	CCNGG	1 cut(s)	1355
BmrI	ACTGGG	2 cut(s)	518, 800
BmsI	GCATC	3 cut(s)	228, 348, 829
BmuI	ACTGGG	2 cut(s)	518, 800
BpiI	GAAGAC	2 cut(s)	310, 644
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	1355
BsaBI	GATNNNNATC	1 cut(s)	923
BsaJI	CCNNGG	1 cut(s)	1353
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 723, 894, 1019
Bse1I	ACTGG	4 cut(s)	304, 513, 806, 843
Bse8I	GATNNNNATC	1 cut(s)	923
BseDI	CCNNGG	1 cut(s)	1353
BseGI	GGATG	2 cut(s)	142, 551
BseJI	GATNNNNATC	1 cut(s)	923
BseLI	CCNNNNNNNGG	4 cut(s)	407, 723, 894, 1019
BseMII	CTCAG	2 cut(s)	111, 345
BseNI	ACTGG	4 cut(s)	304, 513, 806, 843
BseRI	GAGGAG	1 cut(s)	839
BseXI	GCAGC	6 cut(s)	100, 391, 598, 722, 1040, 1291
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	693
Bsh1236I	CGCG	2 cut(s)	489, 950
BshFI	GGCC	5 cut(s)	270, 303, 414, 586, 1094
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	1355
BslFI	GGGAC	2 cut(s)	788, 1151
BslI	CCNNNNNNNGG	4 cut(s)	407, 723, 894, 1019
BsmAI	GTCTC	1 cut(s)	1190
BsmFI	GGGAC	2 cut(s)	788, 1151
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	5 cut(s)	270, 303, 414, 586, 1094
Bsp1286I	GDGCHC	2 cut(s)	75, 515
Bsp1407I	TGTACA	1 cut(s)	1318
Bsp143I	GATC	2 cut(s)	22, 97
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	2 cut(s)	358, 790
BspANI	GGCC	5 cut(s)	270, 303, 414, 586, 1094
BspCNI	CTCAG	2 cut(s)	112, 346
BspFNI	CGCG	2 cut(s)	489, 950
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	4 cut(s)	24, 864, 1166, 1167
BspMI	ACCTGC	1 cut(s)	1031
BspPI	GGATC	2 cut(s)	17, 30
BspQI	GCTCTTC	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	358
BsrGI	TGTACA	1 cut(s)	1318
BsrI	ACTGG	4 cut(s)	304, 513, 806, 843
BssECI	CCNNGG	1 cut(s)	1353
BssMI	GATC	2 cut(s)	22, 97
BssSI	CACGAG	1 cut(s)	569
Bst2BI	CACGAG	1 cut(s)	569
Bst4CI	ACNGT	8 cut(s)	34, 208, 229, 406, 501, 836, 1191, 1219
Bst6I	CTCTTC	2 cut(s)	244, 776
BstAPI	GCANNNNNTGC	2 cut(s)	557, 1037
BstAUI	TGTACA	1 cut(s)	1318
BstC8I	GCNNGC	4 cut(s)	384, 388, 788, 1038
BstDEI	CTNAG	7 cut(s)	106, 120, 283, 326, 354, 579, 876
BstF5I	GGATG	2 cut(s)	142, 551
BstFNI	CGCG	2 cut(s)	489, 950
BstKTI	GATC	2 cut(s)	25, 100
BstMAI	GTCTC	1 cut(s)	1190
BstMBI	GATC	2 cut(s)	22, 97
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 309, 336, 486, 557, 968, 1037
BstNSI	RCATGY	2 cut(s)	532, 1040
BstSCI	CCNGG	1 cut(s)	1353
BstSFI	CTRYAG	5 cut(s)	228, 372, 402, 984, 1241
BstUI	CGCG	2 cut(s)	489, 950
BstV1I	GCAGC	6 cut(s)	100, 391, 598, 722, 1040, 1291
BstV2I	GAAGAC	2 cut(s)	310, 644
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	5 cut(s)	270, 303, 414, 586, 1094
BtsCI	GGATG	2 cut(s)	142, 551
BtsIMutI	CAGTG	4 cut(s)	841, 850, 971, 1003
BveI	ACCTGC	1 cut(s)	1031
Cac8I	GCNNGC	4 cut(s)	384, 388, 788, 1038
CaiI	CAGNNNCTG	1 cut(s)	1046
CciI	TCATGA	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	269, 398, 1165
CseI	GACGC	1 cut(s)	951
Csp6I	GTAC	2 cut(s)	539, 1319
CviQI	GTAC	2 cut(s)	539, 1319
DdeI	CTNAG	7 cut(s)	106, 120, 283, 326, 354, 579, 876
DpnI	GATC	2 cut(s)	24, 99
DpnII	GATC	2 cut(s)	22, 97
DraI	TTTAAA	1 cut(s)	1267
EaeI	YGGCCR	2 cut(s)	301, 1092
Eam1104I	CTCTTC	2 cut(s)	244, 776
EarI	CTCTTC	2 cut(s)	244, 776
Ecl136II	GAGCTC	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	414
Eco24I	GRGCYC	2 cut(s)	75, 515
Eco32I	GATATC	1 cut(s)	1116
Eco47I	GGWCC	2 cut(s)	398, 1165
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	2 cut(s)	398, 1165
EcoRI	GAATTC	2 cut(s)	619, 1128
EcoRV	GATATC	1 cut(s)	1116
EcoT38I	GRGCYC	2 cut(s)	75, 515
FalI	AAGNNNNNCTT	2 cut(s)	1056, 1088
FaqI	GGGAC	2 cut(s)	788, 1151
FauNDI	CATATG	1 cut(s)	754
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	6 cut(s)	114, 380, 612, 736, 1029, 1305
FokI	GGATG	2 cut(s)	149, 558
FriOI	GRGCYC	2 cut(s)	75, 515
Fsp4HI	GCNGC	6 cut(s)	114, 380, 612, 736, 1029, 1305
FspBI	CTAG	4 cut(s)	165, 536, 713, 732
GluI	GCNGC	6 cut(s)	114, 380, 612, 736, 1029, 1305
GsaI	CCCAGC	1 cut(s)	316
HaeIII	GGCC	5 cut(s)	270, 303, 414, 586, 1094
HapII	CCGG	1 cut(s)	1355
HgaI	GACGC	1 cut(s)	951
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HindIII	AAGCTT	3 cut(s)	178, 328, 1070
HinfI	GANTC	5 cut(s)	484, 567, 793, 829, 884
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	1 cut(s)	1355
Hpy166II	GTNNAC	3 cut(s)	566, 729, 946
Hpy188I	TCNGA	4 cut(s)	136, 224, 291, 934
Hpy188III	TCNNGA	6 cut(s)	119, 174, 196, 243, 624, 866
Hpy8I	GTNNAC	3 cut(s)	566, 729, 946
HpyAV	CCTTC	3 cut(s)	332, 425, 668
HpyCH4III	ACNGT	8 cut(s)	34, 208, 229, 406, 501, 836, 1191, 1219
HpyCH4V	TGCA	9 cut(s)	551, 694, 710, 738, 914, 971, 1040, 1307, 1337
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 309, 336, 486, 557, 968, 1037
HpyF3I	CTNAG	7 cut(s)	106, 120, 283, 326, 354, 579, 876
KflI	GGGWCCC	1 cut(s)	1165
Ksp22I	TGATCA	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	2 cut(s)	22, 97
LguI	GCTCTTC	1 cut(s)	776
LmnI	GCTCC	3 cut(s)	70, 121, 1014
Lsp1109I	GCAGC	6 cut(s)	100, 391, 598, 722, 1040, 1291
LweI	GCATC	3 cut(s)	228, 348, 829
MaeI	CTAG	4 cut(s)	165, 536, 713, 732
MaeIII	GTNAC	1 cut(s)	1289
MalI	GATC	2 cut(s)	24, 99
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	2 cut(s)	22, 97
MboII	GAAGA	5 cut(s)	123, 231, 310, 644, 793
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	75, 515
MlsI	TGGCCA	2 cut(s)	303, 1094
MluCI	AATT	8 cut(s)	6, 38, 446, 619, 891, 1014, 1128, 1180
MluNI	TGGCCA	2 cut(s)	303, 1094
MlyI	GAGTC	2 cut(s)	561, 802
MmeI	TCCRAC	3 cut(s)	388, 1210, 1281
MnlI	CCTC	9 cut(s)	153, 158, 192, 404, 576, 817, 853, 949, 1240
Mox20I	TGGCCA	2 cut(s)	303, 1094
MscI	TGGCCA	2 cut(s)	303, 1094
MseI	TTAA	6 cut(s)	18, 36, 183, 249, 945, 1266
MslI	CAYNNNNRTG	2 cut(s)	837, 1041
Msp20I	TGGCCA	2 cut(s)	303, 1094
MspA1I	CMGCKG	3 cut(s)	382, 778, 790
MspI	CCGG	1 cut(s)	1355
MspR9I	CCNGG	1 cut(s)	1355
MunI	CAATTG	1 cut(s)	1014
Mva1269I	GAATGC	1 cut(s)	551
MvnI	CGCG	2 cut(s)	489, 950
MwoI	GCNNNNNNNGC	7 cut(s)	186, 309, 336, 486, 557, 968, 1037
NciI	CCSGG	1 cut(s)	1355
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	2 cut(s)	22, 97
NlaIV	GGNNCC	4 cut(s)	24, 864, 1166, 1167
NspI	RCATGY	2 cut(s)	532, 1040
PaeI	GCATGC	1 cut(s)	1040
PagI	TCATGA	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	1031
PceI	AGGCCT	1 cut(s)	414
PciI	ACATGT	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	776
PctI	GAATGC	1 cut(s)	551
PfeI	GAWTC	3 cut(s)	484, 829, 884
PflMI	CCANNNNNTGG	2 cut(s)	894, 1019
PkrI	GCNGC	6 cut(s)	115, 381, 613, 737, 1030, 1306
PleI	GAGTC	2 cut(s)	561, 801
PpsI	GAGTC	2 cut(s)	561, 801
PpuMI	RGGWCCY	2 cut(s)	398, 1165
PscI	ACATGT	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	75
Psp5II	RGGWCCY	2 cut(s)	398, 1165
PspFI	CCCAGC	1 cut(s)	312
PspN4I	GGNNCC	4 cut(s)	24, 864, 1166, 1167
PspPI	GGNCC	3 cut(s)	269, 398, 1165
PspPPI	RGGWCCY	2 cut(s)	398, 1165
PstNI	CAGNNNCTG	1 cut(s)	1046
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	2 cut(s)	382, 778
RsaI	GTAC	2 cut(s)	540, 1320
RsaNI	GTAC	2 cut(s)	539, 1319
RseI	CAYNNNNRTG	2 cut(s)	837, 1041
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	776
SaqAI	TTAA	6 cut(s)	18, 36, 183, 249, 945, 1266
SatI	GCNGC	6 cut(s)	114, 380, 612, 736, 1029, 1305
Sau3AI	GATC	2 cut(s)	22, 97
Sau96I	GGNCC	3 cut(s)	269, 398, 1165
ScaI	AGTACT	1 cut(s)	540
SchI	GAGTC	2 cut(s)	561, 802
ScrFI	CCNGG	1 cut(s)	1355
SduI	GDGCHC	2 cut(s)	75, 515
SfaNI	GCATC	3 cut(s)	228, 348, 829
SfcI	CTRYAG	5 cut(s)	228, 372, 402, 984, 1241
SinI	GGWCC	2 cut(s)	398, 1165
SmiMI	CAYNNNNRTG	2 cut(s)	837, 1041
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	1040
Sse9I	AATT	8 cut(s)	6, 38, 446, 619, 891, 1014, 1128, 1180
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	2 cut(s)	358, 790
SspI	AATATT	3 cut(s)	84, 938, 979
SspMI	CTAG	4 cut(s)	165, 536, 713, 732
SstI	GAGCTC	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	1353
TaaI	ACNGT	8 cut(s)	34, 208, 229, 406, 501, 836, 1191, 1219
TaqI	TCGA	1 cut(s)	65
TasI	AATT	8 cut(s)	6, 38, 446, 619, 891, 1014, 1128, 1180
TatI	WGTACW	2 cut(s)	538, 1318
TfiI	GAWTC	3 cut(s)	484, 829, 884
Tru1I	TTAA	6 cut(s)	18, 36, 183, 249, 945, 1266
Tru9I	TTAA	6 cut(s)	18, 36, 183, 249, 945, 1266
TscAI	CASTG	4 cut(s)	841, 850, 978, 1003
TseI	GCWGC	6 cut(s)	113, 379, 611, 735, 1028, 1304
TspDTI	ATGAA	5 cut(s)	203, 1076, 1092, 1201, 1225
TspRI	CASTG	4 cut(s)	841, 850, 978, 1003
Van91I	CCANNNNNTGG	2 cut(s)	894, 1019
VpaK11BI	GGWCC	2 cut(s)	398, 1165
XapI	RAATTY	3 cut(s)	619, 1128, 1180
XceI	RCATGY	2 cut(s)	532, 1040
XspI	CTAG	4 cut(s)	165, 536, 713, 732
ZrmI	AGTACT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.