Rh2CG497500

Vacuolar cation proton exchanger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
67002911 .. 67006623
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG497500.1

Sequence Viewer

Length: 1383 bp
ATGGAAATTGACAAAGTTAAGGATCCAGCCACAGTTAAATTACATTCGCAAGTTGAGATGGGGTCGATGGAGCTCAAGTCTATATTGGGATATGATGATCAGGGCTTAGTTGCTGCTCCTGAGAAAAAATCTTCGGATGAGCCTCCCCTCAAAGTTCTATATTCTAGTGGTTCAGGAAGCTTTAATCGCAAGGTCATGAGGAATACCGTGGTTCATAGCATCAGAACTGTAGTTTTCTCTTCAAGACTTAACTTGCTCATGCCTTTTGGCCCATTAGCGATCTTAGTTCAGACTTTGACTGGCCATCATGGCTGGGTCTTCCTTCTAAGCTTGTTGGGCATCATACCTTTGGCCGAGCGGTTAGGATATGCTACAGAGCAGCTGGCTTGCTACACAGGACCTACAGTTGGAGGCCTTCTAAATGCCACTTTTGGAAATGCCACAGAATTGATAATCTCAATATATGCTTTGAGAAATGGCATGATTCGCGTTGTTCAACAGTCTTTACTGGGCTCAATCTTGTCAAACATGTTGCTAGTACTTGGATGTGCATTCTTTGCTGGTGGACTCGTGTTTTCTAAGAGGCCACAAGTGTTCAACAAGCCAACTGCTGCCGTGAACTCAGGATTGCTGTTGATGGCAGTCATGGGTCTTCTCCTTCCAGCTTTACTTCACACTACTCACACAGAGTTGCACTTTGGGAAGTCTGCACTAGCCCTTTCAAGGTTTACTAGCTGCATTATGCTTGTGGCATATGCTTCCTATCTGTTTTTTCAGCTGAAGAGCCAGCGGAGTCTATATGTCCCAGTTGATGAGCAGGGGGAGGAGATTCACAGTGACGCCAGTGATGATGATGACGAGGTTCCTGAAATCTCTAAGTGGGAATCCATAATTTGGCTCACTATTCTAACTGCATGGATTTCAATCCTTTCAGAATATTTAGTTAATGCGATAGAGGGTGCGTCTGTTGCACTGAATATTCCTGTAGCGTTTATCAGTGTTATTTTGCTCCCAATTGTTGGGAACGCAGCAGAGCATGCAGGTGCTGTTATGTTTGCCATGAAAGACAAGCTTGATATAACTTTGGGAGTGGCCATAGGTTCATCAACCCAGATATCTATGTTTGGAATTCCCTTTTGTGTGATGGTTGGGTGGATAATGGGGGTCCCTATGGACTTGAATTTCCAACTGTTTGAGACAGCCACGCTTTTCATAACCGTTCTGGTTGTAGCTTTCATGCTACAGGAGGGAACTTCCAACTACTTTAAAGGAATAATGCTCATTCTTTGTTACATTATTGTTGCTGCAAGTTTCTTTGTACATATAGACCCTACTGCAATACGTGAGTTATTACCTCTCTTTTTACTGTTTATCCCTTTATAA

Protein Analysis

460

Amino Acids

50.11

Weight (kDa)

5.58

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 104 - 260 5.3e-23 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 296 - 438 1.4e-22 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1381
AarI CACCTGC 1 cut(s) 1031
Acc36I ACCTGC 1 cut(s) 1031
AccB7I CCANNNNNTGG 2 cut(s) 894, 1019
AccBSI CCGCTC 1 cut(s) 358
AccII CGCG 1 cut(s) 489
AciI CCGC 2 cut(s) 358, 790
AclWI GGATC 2 cut(s) 17, 30
AcoI YGGCCR 3 cut(s) 301, 351, 1092
AcsI RAATTY 2 cut(s) 1128, 1180
AcuI CTGAAG 1 cut(s) 800
AcyI GRCGYC 1 cut(s) 840
AfaI GTAC 2 cut(s) 540, 1320
AfiI CCNNNNNNNGG 4 cut(s) 407, 723, 894, 1019
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 6 cut(s) 243, 497, 598, 723, 924, 1180
AluBI AGCT 9 cut(s) 73, 180, 330, 382, 665, 735, 778, 1072, 1232
AluI AGCT 9 cut(s) 73, 180, 330, 382, 665, 735, 778, 1072, 1232
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 1190
AlwI GGATC 2 cut(s) 17, 30
AlwNI CAGNNNCTG 1 cut(s) 1046
AoxI GGCC 6 cut(s) 268, 301, 351, 412, 584, 1092
ApeKI GCWGC 6 cut(s) 113, 379, 611, 735, 1028, 1304
ApoI RAATTY 2 cut(s) 1128, 1180
AspS9I GGNCC 3 cut(s) 269, 398, 1165
AvaII GGWCC 2 cut(s) 398, 1165
BalI TGGCCA 2 cut(s) 303, 1094
BamHI GGATCC 1 cut(s) 22
BanII GRGCYC 2 cut(s) 75, 515
BauI CACGAG 1 cut(s) 569
BbsI GAAGAC 2 cut(s) 310, 644
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 6 cut(s) 100, 391, 598, 722, 1040, 1291
BccI CCATC 5 cut(s) 52, 61, 312, 631, 1138
BceAI ACGGC 1 cut(s) 599
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 1190
BfaI CTAG 4 cut(s) 165, 536, 713, 732
BfmI CTRYAG 5 cut(s) 228, 372, 402, 984, 1241
BfuAI ACCTGC 1 cut(s) 1031
BglI GCCNNNNNGGC 1 cut(s) 309
BisI GCNGC 6 cut(s) 114, 380, 612, 736, 1029, 1305
BlsI GCNGC 6 cut(s) 115, 381, 613, 737, 1030, 1306
BmcAI AGTACT 1 cut(s) 540
Bme18I GGWCC 2 cut(s) 398, 1165
BmgT120I GGNCC 3 cut(s) 269, 398, 1165
BmiI GGNNCC 4 cut(s) 24, 864, 1166, 1167
BmrI ACTGGG 2 cut(s) 518, 800
BmsI GCATC 2 cut(s) 228, 348
BmuI ACTGGG 2 cut(s) 518, 800
BpiI GAAGAC 2 cut(s) 310, 644
BpuEI CTTGAG 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 1343
BsaBI GATNNNNATC 1 cut(s) 923
BsaHI GRCGYC 1 cut(s) 840
BsaJI CCNNGG 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 4 cut(s) 407, 723, 894, 1019
Bse1I ACTGG 4 cut(s) 304, 513, 806, 843
Bse8I GATNNNNATC 1 cut(s) 923
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 142, 551
BseJI GATNNNNATC 1 cut(s) 923
BseLI CCNNNNNNNGG 4 cut(s) 407, 723, 894, 1019
BseMII CTCAG 2 cut(s) 111, 636
BseNI ACTGG 4 cut(s) 304, 513, 806, 843
BseRI GAGGAG 1 cut(s) 839
BseXI GCAGC 6 cut(s) 100, 391, 598, 722, 1040, 1291
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 489
BshFI GGCC 6 cut(s) 270, 303, 353, 414, 586, 1094
BsiHKAI GWGCWC 1 cut(s) 75
BslFI GGGAC 2 cut(s) 788, 1151
BslI CCNNNNNNNGG 4 cut(s) 407, 723, 894, 1019
BsmAI GTCTC 1 cut(s) 1190
BsmFI GGGAC 2 cut(s) 788, 1151
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 6 cut(s) 270, 303, 353, 414, 586, 1094
Bsp1286I GDGCHC 2 cut(s) 75, 515
Bsp1407I TGTACA 1 cut(s) 1318
Bsp143I GATC 3 cut(s) 22, 97, 279
BspACI CCGC 2 cut(s) 358, 790
BspANI GGCC 6 cut(s) 270, 303, 353, 414, 586, 1094
BspCNI CTCAG 2 cut(s) 112, 635
BspFNI CGCG 1 cut(s) 489
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 4 cut(s) 24, 864, 1166, 1167
BspMI ACCTGC 1 cut(s) 1031
BspPI GGATC 2 cut(s) 17, 30
BspQI GCTCTTC 1 cut(s) 776
BsrBI CCGCTC 1 cut(s) 358
BsrGI TGTACA 1 cut(s) 1318
BsrI ACTGG 4 cut(s) 304, 513, 806, 843
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 22, 97, 279
BssNI GRCGYC 1 cut(s) 840
BssSI CACGAG 1 cut(s) 569
Bst2BI CACGAG 1 cut(s) 569
Bst4CI ACNGT 9 cut(s) 34, 208, 229, 406, 501, 836, 1191, 1219, 1368
Bst6I CTCTTC 2 cut(s) 244, 776
BstACI GRCGYC 1 cut(s) 840
BstAPI GCANNNNNTGC 2 cut(s) 557, 1037
BstAUI TGTACA 1 cut(s) 1318
BstBAI YACGTR 1 cut(s) 1343
BstC8I GCNNGC 4 cut(s) 384, 388, 788, 1038
BstDEI CTNAG 7 cut(s) 106, 120, 283, 326, 579, 622, 876
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 142, 551
BstFNI CGCG 1 cut(s) 489
BstKTI GATC 3 cut(s) 25, 100, 282
BstMAI GTCTC 1 cut(s) 1190
BstMBI GATC 3 cut(s) 22, 97, 279
BstMWI GCNNNNNNNGC 7 cut(s) 186, 309, 336, 486, 557, 968, 1037
BstNSI RCATGY 2 cut(s) 532, 1040
BstSFI CTRYAG 5 cut(s) 228, 372, 402, 984, 1241
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 6 cut(s) 100, 391, 598, 722, 1040, 1291
BstV2I GAAGAC 2 cut(s) 310, 644
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 6 cut(s) 270, 303, 353, 414, 586, 1094
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 2 cut(s) 142, 551
BtsIMutI CAGTG 4 cut(s) 841, 850, 971, 1003
BveI ACCTGC 1 cut(s) 1031
Cac8I GCNNGC 4 cut(s) 384, 388, 788, 1038
CaiI CAGNNNCTG 1 cut(s) 1046
CciI TCATGA 1 cut(s) 195
Cfr13I GGNCC 3 cut(s) 269, 398, 1165
CseI GACGC 2 cut(s) 848, 951
Csp6I GTAC 2 cut(s) 539, 1319
CviQI GTAC 2 cut(s) 539, 1319
DdeI CTNAG 7 cut(s) 106, 120, 283, 326, 579, 622, 876
DpnI GATC 3 cut(s) 24, 99, 281
DpnII GATC 3 cut(s) 22, 97, 279
DraI TTTAAA 1 cut(s) 1267
EaeI YGGCCR 3 cut(s) 301, 351, 1092
Eam1104I CTCTTC 2 cut(s) 244, 776
EarI CTCTTC 2 cut(s) 244, 776
Ecl136II GAGCTC 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 414
Eco24I GRGCYC 2 cut(s) 75, 515
Eco32I GATATC 1 cut(s) 1116
Eco47I GGWCC 2 cut(s) 398, 1165
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 800
EcoICRI GAGCTC 1 cut(s) 73
EcoO109I RGGNCCY 2 cut(s) 398, 1165
EcoRI GAATTC 1 cut(s) 1128
EcoRV GATATC 1 cut(s) 1116
EcoT38I GRGCYC 2 cut(s) 75, 515
FalI AAGNNNNNCTT 2 cut(s) 1056, 1088
FaqI GGGAC 2 cut(s) 788, 1151
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 6 cut(s) 114, 380, 612, 736, 1029, 1305
FokI GGATG 2 cut(s) 149, 558
FriOI GRGCYC 2 cut(s) 75, 515
Fsp4HI GCNGC 6 cut(s) 114, 380, 612, 736, 1029, 1305
FspBI CTAG 4 cut(s) 165, 536, 713, 732
GluI GCNGC 6 cut(s) 114, 380, 612, 736, 1029, 1305
GsaI CCCAGC 1 cut(s) 316
HaeIII GGCC 6 cut(s) 270, 303, 353, 414, 586, 1094
HgaI GACGC 2 cut(s) 848, 951
Hin1I GRCGYC 1 cut(s) 840
HindIII AAGCTT 3 cut(s) 178, 328, 1070
HinfI GANTC 5 cut(s) 484, 567, 793, 829, 884
Hpy166II GTNNAC 3 cut(s) 566, 619, 729
Hpy188I TCNGA 4 cut(s) 136, 224, 291, 934
Hpy188III TCNNGA 6 cut(s) 119, 174, 196, 243, 624, 866
Hpy8I GTNNAC 3 cut(s) 566, 619, 729
HpyAV CCTTC 3 cut(s) 332, 425, 668
HpyCH4III ACNGT 9 cut(s) 34, 208, 229, 406, 501, 836, 1191, 1219, 1368
HpyCH4IV ACGT 1 cut(s) 1342
HpyCH4V TGCA 9 cut(s) 551, 694, 710, 738, 914, 971, 1040, 1307, 1337
HpyF10VI GCNNNNNNNGC 7 cut(s) 186, 309, 336, 486, 557, 968, 1037
HpyF3I CTNAG 7 cut(s) 106, 120, 283, 326, 579, 622, 876
HpySE526I ACGT 1 cut(s) 1342
Hsp92I GRCGYC 1 cut(s) 840
KflI GGGWCCC 1 cut(s) 1165
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 22, 97, 279
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 3 cut(s) 70, 121, 1014
Lsp1109I GCAGC 6 cut(s) 100, 391, 598, 722, 1040, 1291
LweI GCATC 2 cut(s) 228, 348
MaeI CTAG 4 cut(s) 165, 536, 713, 732
MaeII ACGT 1 cut(s) 1342
MaeIII GTNAC 2 cut(s) 836, 1289
MalI GATC 3 cut(s) 24, 99, 281
MbiI CCGCTC 1 cut(s) 358
MboI GATC 3 cut(s) 22, 97, 279
MboII GAAGA 5 cut(s) 123, 231, 310, 644, 793
MfeI CAATTG 1 cut(s) 1014
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 2 cut(s) 75, 515
MlsI TGGCCA 2 cut(s) 303, 1094
MluCI AATT 7 cut(s) 6, 38, 446, 891, 1014, 1128, 1180
MluNI TGGCCA 2 cut(s) 303, 1094
MlyI GAGTC 2 cut(s) 561, 802
MmeI TCCRAC 3 cut(s) 388, 1210, 1281
Mox20I TGGCCA 2 cut(s) 303, 1094
MscI TGGCCA 2 cut(s) 303, 1094
MseI TTAA 6 cut(s) 18, 36, 183, 249, 945, 1266
MslI CAYNNNNRTG 1 cut(s) 1041
Msp20I TGGCCA 2 cut(s) 303, 1094
MspA1I CMGCKG 3 cut(s) 382, 778, 790
MunI CAATTG 1 cut(s) 1014
Mva1269I GAATGC 1 cut(s) 551
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 7 cut(s) 186, 309, 336, 486, 557, 968, 1037
NdeI CATATG 1 cut(s) 754
NdeII GATC 3 cut(s) 22, 97, 279
NlaIV GGNNCC 4 cut(s) 24, 864, 1166, 1167
NmeAIII GCCGAG 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 836
NspI RCATGY 2 cut(s) 532, 1040
PaeI GCATGC 1 cut(s) 1040
PagI TCATGA 1 cut(s) 195
PaqCI CACCTGC 1 cut(s) 1031
PceI AGGCCT 1 cut(s) 414
PciI ACATGT 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 776
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 3 cut(s) 484, 829, 884
PflMI CCANNNNNTGG 2 cut(s) 894, 1019
PkrI GCNGC 6 cut(s) 115, 381, 613, 737, 1030, 1306
PleI GAGTC 2 cut(s) 561, 801
PpsI GAGTC 2 cut(s) 561, 801
Ppu21I YACGTR 1 cut(s) 1343
PpuMI RGGWCCY 2 cut(s) 398, 1165
PscI ACATGT 1 cut(s) 528
PsiI TTATAA 1 cut(s) 1381
Psp124BI GAGCTC 1 cut(s) 75
Psp5II RGGWCCY 2 cut(s) 398, 1165
PspFI CCCAGC 1 cut(s) 312
PspN4I GGNNCC 4 cut(s) 24, 864, 1166, 1167
PspPI GGNCC 3 cut(s) 269, 398, 1165
PspPPI RGGWCCY 2 cut(s) 398, 1165
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 1 cut(s) 22
PvuII CAGCTG 2 cut(s) 382, 778
RsaI GTAC 2 cut(s) 540, 1320
RsaNI GTAC 2 cut(s) 539, 1319
RseI CAYNNNNRTG 1 cut(s) 1041
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 6 cut(s) 18, 36, 183, 249, 945, 1266
SatI GCNGC 6 cut(s) 114, 380, 612, 736, 1029, 1305
Sau3AI GATC 3 cut(s) 22, 97, 279
Sau96I GGNCC 3 cut(s) 269, 398, 1165
ScaI AGTACT 1 cut(s) 540
SchI GAGTC 2 cut(s) 561, 802
SduI GDGCHC 2 cut(s) 75, 515
SfaNI GCATC 2 cut(s) 228, 348
SfcI CTRYAG 5 cut(s) 228, 372, 402, 984, 1241
SinI GGWCC 2 cut(s) 398, 1165
SmiMI CAYNNNNRTG 1 cut(s) 1041
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SphI GCATGC 1 cut(s) 1040
Sse9I AATT 7 cut(s) 6, 38, 446, 891, 1014, 1128, 1180
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 2 cut(s) 358, 790
SspI AATATT 2 cut(s) 938, 979
SspMI CTAG 4 cut(s) 165, 536, 713, 732
SstI GAGCTC 1 cut(s) 75
StuI AGGCCT 1 cut(s) 414
TaaI ACNGT 9 cut(s) 34, 208, 229, 406, 501, 836, 1191, 1219, 1368
TaiI ACGT 1 cut(s) 1345
TaqI TCGA 1 cut(s) 65
TasI AATT 7 cut(s) 6, 38, 446, 891, 1014, 1128, 1180
TatI WGTACW 2 cut(s) 538, 1318
TfiI GAWTC 3 cut(s) 484, 829, 884
Tru1I TTAA 6 cut(s) 18, 36, 183, 249, 945, 1266
Tru9I TTAA 6 cut(s) 18, 36, 183, 249, 945, 1266
TscAI CASTG 4 cut(s) 841, 850, 978, 1003
TseFI GTSAC 1 cut(s) 836
TseI GCWGC 6 cut(s) 113, 379, 611, 735, 1028, 1304
Tsp45I GTSAC 1 cut(s) 836
TspDTI ATGAA 5 cut(s) 203, 1076, 1092, 1201, 1225
TspRI CASTG 4 cut(s) 841, 850, 978, 1003
Van91I CCANNNNNTGG 2 cut(s) 894, 1019
VpaK11BI GGWCC 2 cut(s) 398, 1165
XapI RAATTY 2 cut(s) 1128, 1180
XceI RCATGY 2 cut(s) 532, 1040
XspI CTAG 4 cut(s) 165, 536, 713, 732
ZrmI AGTACT 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.