pycom11g03540

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
2731023 .. 2734644
3622 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g03540.9

Sequence Viewer

Length: 1350 bp
ATGAATTATAAGCCTGGAATCCAGTCTCAACTTGAAATGGAATCACTGGGTAAGGGATCGATACATGAGTTTGAGGATGAGAGTCTTTTTACTCCAAAGACAGATGCTCAAAAGACAAGTTCTATTGAAGCTGTGGGAGAATGTTCGTTTTCAGGAGGTTCACAAGCTAGCGGTGATAAAGTGTGGGGGAATATTTTTTATAGAAGCATAAAGACTGTTGTTTTCTCAACTAAACTCAACTTGCTTATGCCTTTTGGACCGCTAGCGATATTTGTCTCTAAGCTAACCGGCCATAATGGTTGGGTCTTTGTTTTGAGCTTGTTGGGTATAACACCTTTAGCTGAGCGTTTAGGTTATGCTACCGAGCAGCTGGCATTCTATACTGGAGCTACTGTTGGGGGTCTTTTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCGATTTATGCACTGAAACGTGGAATGTTACGCGTTGTTCAGCAGTCGTTGTTAGGCTCTATTCTGTCAAACATGTTGCTGGTGCTTGGCTGTGCATTCTTCAGTGGTGGACTTGTTTTTCAAGAGAAAGAACAGGTGTTTAACAAGGCAACTGCTGTTGTGAATTCAGGCTTGCTGTTAATGGCAGTCATGGGCCTACTTTTTCCAGCTGTCTTGCACTACACTCACACTGAGGTGCATTTCGGAAAGTCAGAGTTGGCACTTTCAAGATTTAGCAGCTGTGTCATGCTCCTGGCATATGCTGCTTATCTTTTCTTCCAGTTAAAGAGTCAGCATAATCAATATGTGCCTCTAAATGAGGAAGAGATTCAGAATGAAGAGAATGCAGATGACGATGAAGCTCCTGAGATATCTAAATGGGAATCAATAATTTGGCTATCAATAATGACTGCTTGGATCTCAATCGTATCCGAATATTTAGTTAACGCCATAGAGGGAGCATCTATAGCATGGAACATGCCAATTTCATTTATCAGCGTTATTTTGCTCCCAATTGTGGGTAATGCCGCAGAGCATGCCAGTGCTATTATGTTTGCCATGAAGGACAAGCTTGACATTTCTTTGGGAGTGGCAATAGGGTCGTCAACGCAGATATCCATGTTTGGGATTCCTTTCTGCGTGGTTGTTGGGTGGATTATGGGGCGCCCAATGGACTTGAACTTTCAGCTTTTTGAGACGGCAACCCTTTTCATAACTGTCTTAGTTGTAGCCTTCTTGCTGCAGGATGGAACCTCTAATTACTTCAAAGGGTTGATGCTTATTCTTTGTTATCTGATAGTTGCTGCAAGTTTCTTTGTTCACGTAGATCCTTCACCGGCAGAAGAGGAAACGCAAGTAAAAACGTAA

Protein Analysis

450

Amino Acids

49.15

Weight (kDa)

4.92

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 1146
AccII CGCG 1 cut(s) 477
AciI CCGC 3 cut(s) 171, 260, 1011
AclWI GGATC 3 cut(s) 64, 908, 1304
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 529
AcyI GRCGYC 1 cut(s) 1147
AfiI CCNNNNNNNGG 3 cut(s) 1000, 1001, 1107
AflIII ACRYGT 2 cut(s) 475, 516
AgsI TTSAA 6 cut(s) 35, 128, 566, 711, 1162, 1249
AjnI CCWGG 2 cut(s) 13, 735
AleI CACNNNNGTG 1 cut(s) 677
Alw26I GTCTC 3 cut(s) 30, 280, 1172
AlwI GGATC 3 cut(s) 64, 908, 1304
AoxI GGCC 2 cut(s) 289, 637
ApeKI GCWGC 5 cut(s) 367, 720, 746, 1222, 1286
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 1 cut(s) 1149
AspS9I GGNCC 2 cut(s) 257, 637
AsuHPI GGTGA 2 cut(s) 185, 1308
AsuNHI GCTAGC 2 cut(s) 167, 262
AvaII GGWCC 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 53, 86
BanI GGYRCC 1 cut(s) 1146
BbvI GCAGC 5 cut(s) 379, 732, 733, 1209, 1273
BccI CCATC 1 cut(s) 1223
BceAI ACGGC 1 cut(s) 1197
BcgI CGANNNNNNTGC 2 cut(s) 1065, 1099
BciT130I CCWGG 2 cut(s) 15, 737
BciVI GTATCC 1 cut(s) 922
BcoDI GTCTC 3 cut(s) 30, 280, 1172
BfaI CTAG 2 cut(s) 168, 263
BfmI CTRYAG 2 cut(s) 948, 1223
BfoI RGCGCY 1 cut(s) 1150
BfuI GTATCC 1 cut(s) 922
BisI GCNGC 6 cut(s) 368, 721, 747, 1011, 1223, 1287
BlpI GCTNAGC 1 cut(s) 342
BlsI GCNGC 6 cut(s) 369, 722, 748, 1012, 1224, 1288
Bme1390I CCNGG 2 cut(s) 15, 737
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 257, 637
BmiI GGNNCC 2 cut(s) 1148, 1234
BmrFI CCNGG 2 cut(s) 15, 737
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 3 cut(s) 94, 953, 1248
BmtI GCTAGC 2 cut(s) 171, 266
BmuI ACTGGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 342
Bsa29I ATCGAT 2 cut(s) 59, 446
BsaAI YACGTR 1 cut(s) 1306
BsaBI GATNNNNATC 1 cut(s) 905
BsaHI GRCGYC 1 cut(s) 1147
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 1000, 1001, 1107
Bse118I RCCGGY 2 cut(s) 287, 1318
Bse1I ACTGG 5 cut(s) 22, 51, 388, 763, 1023
Bse8I GATNNNNATC 1 cut(s) 905
BseBI CCWGG 2 cut(s) 15, 737
BseCI ATCGAT 2 cut(s) 59, 446
BseGI GGATG 2 cut(s) 82, 1234
BseJI GATNNNNATC 1 cut(s) 905
BseLI CCNNNNNNNGG 3 cut(s) 1000, 1001, 1107
BseMII CTCAG 3 cut(s) 333, 666, 840
BseNI ACTGG 5 cut(s) 22, 51, 388, 763, 1023
BseXI GCAGC 5 cut(s) 379, 732, 733, 1209, 1273
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 2 cut(s) 291, 639
BshNI GGYRCC 1 cut(s) 1146
BshVI ATCGAT 2 cut(s) 59, 446
BsiSI CCGG 2 cut(s) 288, 1319
BslI CCNNNNNNNGG 3 cut(s) 1000, 1001, 1107
BsmAI GTCTC 3 cut(s) 30, 280, 1172
BsmBI CGTCTC 1 cut(s) 1172
BsmI GAATGC 3 cut(s) 374, 539, 832
BsnI GGCC 2 cut(s) 291, 639
Bsp143I GATC 3 cut(s) 56, 900, 1309
Bsp1720I GCTNAGC 1 cut(s) 342
BspACI CCGC 3 cut(s) 171, 260, 1011
BspANI GGCC 2 cut(s) 291, 639
BspCNI CTCAG 3 cut(s) 334, 667, 841
BspDI ATCGAT 2 cut(s) 59, 446
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 2 cut(s) 1148, 1234
BspMAI CTGCAG 1 cut(s) 1227
BspOI GCTAGC 2 cut(s) 171, 266
BspPI GGATC 3 cut(s) 64, 908, 1304
BspT107I GGYRCC 1 cut(s) 1146
BsrFI RCCGGY 2 cut(s) 287, 1318
BsrI ACTGG 5 cut(s) 22, 51, 388, 763, 1023
BssAI RCCGGY 2 cut(s) 287, 1318
BssMI GATC 3 cut(s) 56, 900, 1309
BssNI GRCGYC 1 cut(s) 1147
Bst2UI CCWGG 2 cut(s) 15, 737
Bst4CI ACNGT 3 cut(s) 217, 394, 1201
Bst6I CTCTTC 3 cut(s) 801, 816, 1320
BstACI GRCGYC 1 cut(s) 1147
BstAPI GCANNNNNTGC 2 cut(s) 746, 1019
BstBAI YACGTR 1 cut(s) 1306
BstC8I GCNNGC 5 cut(s) 169, 264, 372, 617, 1020
BstDEI CTNAG 5 cut(s) 279, 342, 675, 849, 1204
BstF5I GGATG 2 cut(s) 82, 1234
BstFNI CGCG 1 cut(s) 477
BstH2I RGCGCY 1 cut(s) 1150
BstHHI GCGC 1 cut(s) 1149
BstKTI GATC 3 cut(s) 59, 903, 1312
BstMAI GTCTC 3 cut(s) 30, 280, 1172
BstMBI GATC 3 cut(s) 56, 900, 1309
BstMWI GCNNNNNNNGC 3 cut(s) 746, 950, 1019
BstNI CCWGG 2 cut(s) 15, 737
BstNSI RCATGY 3 cut(s) 520, 964, 1022
BstSCI CCNGG 2 cut(s) 13, 735
BstSFI CTRYAG 2 cut(s) 948, 1223
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 5 cut(s) 379, 732, 733, 1209, 1273
BstX2I RGATCY 2 cut(s) 900, 1309
BstYI RGATCY 2 cut(s) 900, 1309
Bsu15I ATCGAT 2 cut(s) 59, 446
BsuI GTATCC 1 cut(s) 922
BsuRI GGCC 2 cut(s) 291, 639
BsuTUI ATCGAT 2 cut(s) 59, 446
BtsCI GGATG 2 cut(s) 82, 1234
BtsIMutI CAGTG 5 cut(s) 44, 455, 553, 672, 1030
Cac8I GCNNGC 5 cut(s) 169, 264, 372, 617, 1020
CfoI GCGC 1 cut(s) 1149
Cfr10I RCCGGY 2 cut(s) 287, 1318
Cfr13I GGNCC 2 cut(s) 257, 637
ClaI ATCGAT 2 cut(s) 59, 446
CviAII CATG 9 cut(s) 65, 517, 634, 730, 954, 961, 1019, 1042, 1102
DdeI CTNAG 5 cut(s) 279, 342, 675, 849, 1204
DinI GGCGCC 1 cut(s) 1148
DpnI GATC 3 cut(s) 58, 902, 1311
DpnII GATC 3 cut(s) 56, 900, 1309
DraI TTTAAA 1 cut(s) 408
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 3 cut(s) 801, 816, 1320
EarI CTCTTC 3 cut(s) 801, 816, 1320
Eco32I GATATC 2 cut(s) 855, 1098
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 2 cut(s) 13, 735
EcoRV GATATC 2 cut(s) 855, 1098
EgeI GGCGCC 1 cut(s) 1148
EheI GGCGCC 1 cut(s) 1148
Esp3I CGTCTC 1 cut(s) 1172
FaeI CATG 9 cut(s) 68, 520, 637, 733, 957, 964, 1022, 1045, 1105
FatI CATG 9 cut(s) 64, 516, 633, 729, 953, 960, 1018, 1041, 1101
FauNDI CATATG 1 cut(s) 742
Fnu4HI GCNGC 6 cut(s) 368, 721, 747, 1011, 1223, 1287
FokI GGATG 2 cut(s) 89, 1241
Fsp4HI GCNGC 6 cut(s) 368, 721, 747, 1011, 1223, 1287
FspBI CTAG 2 cut(s) 168, 263
GlaI GCGC 1 cut(s) 1148
GluI GCNGC 6 cut(s) 368, 721, 747, 1011, 1223, 1287
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 1150
HaeIII GGCC 2 cut(s) 291, 639
HapII CCGG 2 cut(s) 288, 1319
HhaI GCGC 1 cut(s) 1149
Hin1I GRCGYC 1 cut(s) 1147
Hin1II CATG 9 cut(s) 68, 520, 637, 733, 957, 964, 1022, 1045, 1105
Hin6I GCGC 1 cut(s) 1147
HinP1I GCGC 1 cut(s) 1147
HincII GTYRAC 2 cut(s) 928, 1089
HindII GTYRAC 2 cut(s) 928, 1089
HindIII AAGCTT 1 cut(s) 1052
HinfI GANTC 7 cut(s) 18, 41, 82, 772, 811, 866, 1111
HpaI GTTAAC 1 cut(s) 928
HpaII CCGG 2 cut(s) 288, 1319
HphI GGTGA 2 cut(s) 185, 1308
Hpy166II GTNNAC 5 cut(s) 161, 554, 928, 1089, 1303
Hpy188I TCNGA 5 cut(s) 689, 697, 816, 916, 1278
Hpy188III TCNNGA 4 cut(s) 153, 566, 711, 848
Hpy8I GTNNAC 5 cut(s) 161, 554, 928, 1089, 1303
HpyAV CCTTC 3 cut(s) 1039, 1225, 1323
HpyCH4III ACNGT 3 cut(s) 217, 394, 1201
HpyCH4IV ACGT 3 cut(s) 463, 1305, 1346
HpyCH4V TGCA 8 cut(s) 428, 455, 539, 661, 682, 830, 1225, 1289
HpyF10VI GCNNNNNNNGC 3 cut(s) 746, 950, 1019
HpyF3I CTNAG 5 cut(s) 279, 342, 675, 849, 1204
HpySE526I ACGT 3 cut(s) 463, 1305, 1346
Hsp92I GRCGYC 1 cut(s) 1147
Hsp92II CATG 9 cut(s) 68, 520, 637, 733, 957, 964, 1022, 1045, 1105
HspAI GCGC 1 cut(s) 1147
KasI GGCGCC 1 cut(s) 1146
KspAI GTTAAC 1 cut(s) 928
Kzo9I GATC 3 cut(s) 56, 900, 1309
LmnI GCTCC 5 cut(s) 386, 738, 850, 941, 996
Lsp1109I GCAGC 5 cut(s) 379, 732, 733, 1209, 1273
LweI GCATC 3 cut(s) 94, 953, 1248
MaeI CTAG 2 cut(s) 168, 263
MaeII ACGT 3 cut(s) 463, 1305, 1346
MaeIII GTNAC 1 cut(s) 471
MalI GATC 3 cut(s) 58, 902, 1311
MboI GATC 3 cut(s) 56, 900, 1309
MboII GAAGA 5 cut(s) 535, 751, 818, 833, 1337
MfeI CAATTG 1 cut(s) 996
MflI RGATCY 2 cut(s) 900, 1309
MluCI AATT 6 cut(s) 4, 607, 873, 966, 996, 1240
MluI ACGCGT 1 cut(s) 475
Mly113I GGCGCC 1 cut(s) 1147
MlyI GAGTC 2 cut(s) 91, 781
MnlI CCTC 8 cut(s) 67, 149, 670, 796, 804, 931, 1246, 1321
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 5 cut(s) 407, 585, 623, 767, 927
MslI CAYNNNNRTG 2 cut(s) 677, 1023
MspA1I CMGCKG 3 cut(s) 370, 653, 723
MspI CCGG 2 cut(s) 288, 1319
MspR9I CCNGG 2 cut(s) 15, 737
MunI CAATTG 1 cut(s) 996
Mva1269I GAATGC 3 cut(s) 374, 539, 832
MvaI CCWGG 2 cut(s) 15, 737
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 3 cut(s) 746, 950, 1019
NarI GGCGCC 1 cut(s) 1147
NdeI CATATG 1 cut(s) 742
NdeII GATC 3 cut(s) 56, 900, 1309
NheI GCTAGC 2 cut(s) 167, 262
NlaIII CATG 9 cut(s) 68, 520, 637, 733, 957, 964, 1022, 1045, 1105
NlaIV GGNNCC 2 cut(s) 1148, 1234
NspI RCATGY 3 cut(s) 520, 964, 1022
OliI CACNNNNGTG 1 cut(s) 677
PaeI GCATGC 1 cut(s) 1022
PciI ACATGT 1 cut(s) 516
PctI GAATGC 3 cut(s) 374, 539, 832
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 5 cut(s) 18, 41, 811, 866, 1111
PkrI GCNGC 6 cut(s) 369, 722, 748, 1012, 1224, 1288
PleI GAGTC 2 cut(s) 90, 780
PluTI GGCGCC 1 cut(s) 1150
PpsI GAGTC 2 cut(s) 90, 780
Ppu21I YACGTR 1 cut(s) 1306
PscI ACATGT 1 cut(s) 516
PsiI TTATAA 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 13, 735
PspGI CCWGG 2 cut(s) 13, 735
PspN4I GGNNCC 2 cut(s) 1148, 1234
PspPI GGNCC 2 cut(s) 257, 637
PstI CTGCAG 1 cut(s) 1227
PsuI RGATCY 2 cut(s) 900, 1309
PvuII CAGCTG 3 cut(s) 370, 653, 723
RseI CAYNNNNRTG 2 cut(s) 677, 1023
SaqAI TTAA 5 cut(s) 407, 585, 623, 767, 927
SatI GCNGC 6 cut(s) 368, 721, 747, 1011, 1223, 1287
Sau3AI GATC 3 cut(s) 56, 900, 1309
Sau96I GGNCC 2 cut(s) 257, 637
SchI GAGTC 2 cut(s) 91, 781
ScrFI CCNGG 2 cut(s) 15, 737
SfaNI GCATC 3 cut(s) 94, 953, 1248
SfcI CTRYAG 2 cut(s) 948, 1223
SfoI GGCGCC 1 cut(s) 1148
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 677, 1023
SphI GCATGC 1 cut(s) 1022
Sse9I AATT 6 cut(s) 4, 607, 873, 966, 996, 1240
SsiI CCGC 3 cut(s) 171, 260, 1011
SspDI GGCGCC 1 cut(s) 1146
SspI AATATT 2 cut(s) 193, 920
SspMI CTAG 2 cut(s) 168, 263
StyD4I CCNGG 2 cut(s) 13, 735
TaaI ACNGT 3 cut(s) 217, 394, 1201
TaiI ACGT 3 cut(s) 466, 1308, 1349
TaqI TCGA 2 cut(s) 59, 446
TasI AATT 6 cut(s) 4, 607, 873, 966, 996, 1240
TauI GCSGC 1 cut(s) 1013
TfiI GAWTC 5 cut(s) 18, 41, 811, 866, 1111
Tru1I TTAA 5 cut(s) 407, 585, 623, 767, 927
Tru9I TTAA 5 cut(s) 407, 585, 623, 767, 927
TscAI CASTG 5 cut(s) 51, 462, 553, 679, 1030
TseI GCWGC 5 cut(s) 367, 720, 746, 1222, 1286
TspDTI ATGAA 6 cut(s) 17, 834, 855, 960, 1058, 1183
TspRI CASTG 5 cut(s) 51, 462, 553, 679, 1030
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 1 cut(s) 607
XceI RCATGY 3 cut(s) 520, 964, 1022
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 2 cut(s) 168, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.