Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002198

Physical Location & Seq

Genomic Coordinates Forward (+)

2502116 .. 2506923

Gene Structure 4808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G032600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGAATTATAAGTTACAAGGGCTTGAAATCCAGTCTCAACTTGAAATGGAATCACTGGACAACAGTTCAATACATGAATTTGAGGATGAGAGTCCTTTTACTCCGGGGGCTGAGGCTCAAAAGACACATTCTATGCAAGCAGTGGGGGAATGTTCATTTTCACGGGGTTCACAAGCTAGTGGTGATAAAGTGTGGAGAAATATATGCAGAAGCATAAAGACTGTAGTTTTCTCAACTAAGCTCAACTTGCTTATGCCCTTTGGACCTCTAGCGATATTTGTATATAAGTTAACTGGCCATAATGGCTGGGTCTTTTTCTTGAGCTTGTTGGGCATAACACCTTTGGCTGAGCGTTTAGGTTATGCTACAGAGCAGCTGGCGTTCTATACTGGAGCTACTGTTGGGGGTCTTTTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCAATTTATGCACTGAAACGTGGAATGTTACGCGTTGTTCAGCAGTCGTTGTTAGGTTCTATTCTGTCAAACATGCTGCTGGTGCTTGGTTGTGCATTCTTCAGTGGTGGGCTTGTTTTTCATGAGAAGGAACAGGTGTTTAACAAGGCAACTGCTGTTGTGAACTCAGGGTTGCTGTTAATGGCAGTCATGGGCCTACTTTTTCCAGCTGTTTTGCACTATACTCACACTGAGGTGCATTTTGGGAAGTCAGAGTTGGCACTTTCAAGATTTAGCAGTTGCATCATGCTTGTGGCATATGCCACATATCTTTTCTTCCAGTTAAAGAGTCAAAAGAATCTGTATGTTCCTCTAAATGAGGAAGTGAGTCAGAATGAAGAGAACTCAGATGATGATGAAGCTCCTGAGATCTCTAAATGGGAATCAATAATTTGGCTTTCAATAATGACGGCTTGGATCTCAATCCTATCGGAATATTTAGTTAATGCCATAGAGGGAGCATCTGTAGCATGGAACTTGCCGGTTGCATTTATCAGTGTTATTTTGCTCCCAATTGTGGGTAATGCTGCAGAGCATGCTAGTGCAATTATGTTTGCCATGAAGGACAAGCTTGACATTTCTTTGGGAGTGGCAATAGGGTCATCAACACAGATATCCATGTTTGGGATTCCTTTTTGTGTAGTTGTTGGGTGGATTATGGGGCGCCCTATGGACTTGAACTTTCAGCTTTTTGAGACAGCAACACTTTTTATAACTGTCTTAGTTGTAGCCTTTATGCTGCAGGATGGAACCTCTAATTACTTCAAAGGGTTGATGCTTATTCTTTGTTATCTGATAGTCGCCGCAAGTTTCTTTGTTCATGTAGATCCTTCTCCAGCAGATGAAACACAATCGAAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051139 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

451

Amino Acids

49.47

Weight (kDa)

5.09

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55730 AT1G55730 AT3G13320
fragaria_vesca	FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200
malus_domestica	MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1
prunus_persica	Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1
pyrus_communis	pycom03g03100 pycom11g03540
rosa_chinensis	RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081
rosa_laevigata	RLG00000020827 RLG00000036528
rosa_multiflora	Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006540 Rroxscaffold_2G00093860
rosa_rugosa	Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100
rosa_samantha	Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700
rosa_wichuraiana	Rw2G042100 Rw5G045760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	9, 1202
AccB1I	GGYRCC	1 cut(s)	1152
AccII	CGCG	1 cut(s)	483
AciI	CCGC	1 cut(s)	1293
AclWI	GGATC	2 cut(s)	914, 1310
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	535
AcyI	GRCGYC	1 cut(s)	1153
AfiI	CCNNNNNNNGG	3 cut(s)	1006, 1007, 1113
AflIII	ACRYGT	1 cut(s)	481
AgsI	TTSAA	7 cut(s)	26, 44, 69, 717, 891, 1168, 1255
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	9 cut(s)	176, 241, 324, 376, 395, 659, 851, 1060, 1177
AluI	AGCT	9 cut(s)	176, 241, 324, 376, 395, 659, 851, 1060, 1177
Alw26I	GTCTC	2 cut(s)	39, 1178
AlwI	GGATC	2 cut(s)	914, 1310
AoxI	GGCC	2 cut(s)	295, 643
ApeKI	GCWGC	4 cut(s)	373, 526, 1016, 1228
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	1155
AspS9I	GGNCC	2 cut(s)	263, 643
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	1152
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	4 cut(s)	385, 513, 1003, 1215
BccI	CCATC	1 cut(s)	1229
BceAI	ACGGC	1 cut(s)	915
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	39, 1178
BfaI	CTAG	3 cut(s)	177, 269, 1029
BfmI	CTRYAG	5 cut(s)	222, 366, 954, 1017, 1229
BfoI	RGCGCY	1 cut(s)	1156
BglI	GCCNNNNNGGC	1 cut(s)	303
BglII	AGATCT	1 cut(s)	858
BisI	GCNGC	5 cut(s)	374, 527, 1017, 1229, 1293
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	5 cut(s)	375, 528, 1018, 1230, 1294
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	263, 643
BmiI	GGNNCC	2 cut(s)	1154, 1240
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	3 cut(s)	741, 959, 1254
BpmI	CTGGAG	2 cut(s)	411, 1308
Bpu10I	CCTNAGC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	911
BsaHI	GRCGYC	1 cut(s)	1153
BsaJI	CCNNGG	1 cut(s)	104
BsaXI	ACNNNNNCTCC	4 cut(s)	384, 414, 939, 969
Bsc4I	CCNNNNNNNGG	3 cut(s)	1006, 1007, 1113
Bse118I	RCCGGY	1 cut(s)	970
Bse1I	ACTGG	5 cut(s)	31, 60, 298, 394, 769
Bse8I	GATNNNNATC	1 cut(s)	911
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	91, 1240
BseJI	GATNNNNATC	1 cut(s)	911
BseLI	CCNNNNNNNGG	3 cut(s)	1006, 1007, 1113
BseMII	CTCAG	6 cut(s)	102, 339, 630, 672, 846, 849
BseNI	ACTGG	5 cut(s)	31, 60, 298, 394, 769
BseXI	GCAGC	4 cut(s)	385, 513, 1003, 1215
BseYI	CCCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	297, 645
BshNI	GGYRCC	1 cut(s)	1152
BsiSI	CCGG	2 cut(s)	104, 971
BslI	CCNNNNNNNGG	3 cut(s)	1006, 1007, 1113
BsmAI	GTCTC	2 cut(s)	39, 1178
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	297, 645
Bsp143I	GATC	3 cut(s)	858, 906, 1315
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	1293
BspANI	GGCC	2 cut(s)	297, 645
BspCNI	CTCAG	6 cut(s)	103, 340, 629, 673, 847, 848
BspFNI	CGCG	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	1154, 1240
BspMAI	CTGCAG	2 cut(s)	1021, 1233
BspPI	GGATC	2 cut(s)	914, 1310
BspT107I	GGYRCC	1 cut(s)	1152
BsrFI	RCCGGY	1 cut(s)	970
BsrI	ACTGG	5 cut(s)	31, 60, 298, 394, 769
BssAI	RCCGGY	1 cut(s)	970
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	3 cut(s)	858, 906, 1315
BssNI	GRCGYC	1 cut(s)	1153
Bst4CI	ACNGT	4 cut(s)	65, 223, 400, 1207
Bst6I	CTCTTC	1 cut(s)	822
BstACI	GRCGYC	1 cut(s)	1153
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstC8I	GCNNGC	3 cut(s)	138, 378, 1026
BstDEI	CTNAG	8 cut(s)	111, 237, 348, 616, 681, 835, 855, 1210
BstF5I	GGATG	2 cut(s)	91, 1240
BstFNI	CGCG	1 cut(s)	483
BstH2I	RGCGCY	1 cut(s)	1156
BstHHI	GCGC	1 cut(s)	1155
BstKTI	GATC	3 cut(s)	861, 909, 1318
BstMAI	GTCTC	2 cut(s)	39, 1178
BstMBI	GATC	3 cut(s)	858, 906, 1315
BstMWI	GCNNNNNNNGC	6 cut(s)	247, 303, 330, 532, 956, 1025
BstNSI	RCATGY	2 cut(s)	526, 1028
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	5 cut(s)	222, 366, 954, 1017, 1229
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	4 cut(s)	385, 513, 1003, 1215
BstX2I	RGATCY	3 cut(s)	858, 906, 1315
BstYI	RGATCY	3 cut(s)	858, 906, 1315
BsuRI	GGCC	2 cut(s)	297, 645
BtsCI	GGATG	2 cut(s)	91, 1240
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	6 cut(s)	53, 147, 461, 559, 678, 991
Cac8I	GCNNGC	3 cut(s)	138, 378, 1026
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	1155
Cfr10I	RCCGGY	1 cut(s)	970
Cfr13I	GGNCC	2 cut(s)	263, 643
DdeI	CTNAG	8 cut(s)	111, 237, 348, 616, 681, 835, 855, 1210
DinI	GGCGCC	1 cut(s)	1154
DpnI	GATC	3 cut(s)	860, 908, 1317
DpnII	GATC	3 cut(s)	858, 906, 1315
DraI	TTTAAA	1 cut(s)	414
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco32I	GATATC	1 cut(s)	1104
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	535
EcoRV	GATATC	1 cut(s)	1104
EgeI	GGCGCC	1 cut(s)	1154
EheI	GGCGCC	1 cut(s)	1154
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FauNDI	CATATG	1 cut(s)	748
Fnu4HI	GCNGC	5 cut(s)	374, 527, 1017, 1229, 1293
FokI	GGATG	2 cut(s)	98, 1247
Fsp4HI	GCNGC	5 cut(s)	374, 527, 1017, 1229, 1293
FspBI	CTAG	3 cut(s)	177, 269, 1029
GlaI	GCGC	1 cut(s)	1154
GluI	GCNGC	5 cut(s)	374, 527, 1017, 1229, 1293
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	2 cut(s)	411, 1308
HaeII	RGCGCY	1 cut(s)	1156
HaeIII	GGCC	2 cut(s)	297, 645
HapII	CCGG	2 cut(s)	104, 971
HhaI	GCGC	1 cut(s)	1155
Hin1I	GRCGYC	1 cut(s)	1153
Hin6I	GCGC	1 cut(s)	1153
HinP1I	GCGC	1 cut(s)	1153
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	1058
HinfI	GANTC	7 cut(s)	50, 91, 778, 787, 817, 872, 1117
HpaI	GTTAAC	1 cut(s)	291
HpaII	CCGG	2 cut(s)	104, 971
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	170, 291, 613
Hpy188I	TCNGA	5 cut(s)	703, 822, 838, 922, 1284
Hpy188III	TCNNGA	4 cut(s)	319, 572, 717, 854
Hpy8I	GTNNAC	3 cut(s)	170, 291, 613
HpyAV	CCTTC	3 cut(s)	571, 1045, 1329
HpyCH4III	ACNGT	4 cut(s)	65, 223, 400, 1207
HpyCH4IV	ACGT	2 cut(s)	469, 1349
HpyF10VI	GCNNNNNNNGC	6 cut(s)	247, 303, 330, 532, 956, 1025
HpyF3I	CTNAG	8 cut(s)	111, 237, 348, 616, 681, 835, 855, 1210
HpySE526I	ACGT	2 cut(s)	469, 1349
Hsp92I	GRCGYC	1 cut(s)	1153
HspAI	GCGC	1 cut(s)	1153
KasI	GGCGCC	1 cut(s)	1152
KspAI	GTTAAC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	858, 906, 1315
LmnI	GCTCC	4 cut(s)	392, 856, 947, 1002
Lsp1109I	GCAGC	4 cut(s)	385, 513, 1003, 1215
LweI	GCATC	3 cut(s)	741, 959, 1254
MaeI	CTAG	3 cut(s)	177, 269, 1029
MaeII	ACGT	2 cut(s)	469, 1349
MaeIII	GTNAC	2 cut(s)	12, 477
MalI	GATC	3 cut(s)	860, 908, 1317
MboI	GATC	3 cut(s)	858, 906, 1315
MboII	GAAGA	3 cut(s)	541, 757, 839
MfeI	CAATTG	1 cut(s)	1002
MflI	RGATCY	3 cut(s)	858, 906, 1315
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	7 cut(s)	4, 77, 453, 879, 1002, 1035, 1246
MluI	ACGCGT	1 cut(s)	481
MluNI	TGGCCA	1 cut(s)	297
Mly113I	GGCGCC	1 cut(s)	1153
MlyI	GAGTC	3 cut(s)	100, 787, 826
MnlI	CCTC	8 cut(s)	76, 106, 276, 676, 802, 810, 937, 1252
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	6 cut(s)	290, 413, 591, 629, 773, 933
MslI	CAYNNNNRTG	3 cut(s)	683, 740, 1029
Msp20I	TGGCCA	1 cut(s)	297
MspA1I	CMGCKG	2 cut(s)	376, 659
MspI	CCGG	2 cut(s)	104, 971
MspR9I	CCNGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	1002
Mva1269I	GAATGC	1 cut(s)	545
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	6 cut(s)	247, 303, 330, 532, 956, 1025
NarI	GGCGCC	1 cut(s)	1153
NciI	CCSGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	3 cut(s)	858, 906, 1315
NlaIV	GGNNCC	2 cut(s)	1154, 1240
NspI	RCATGY	2 cut(s)	526, 1028
OliI	CACNNNNGTG	1 cut(s)	683
PaeI	GCATGC	1 cut(s)	1028
PagI	TCATGA	1 cut(s)	571
PctI	GAATGC	1 cut(s)	545
PfeI	GAWTC	4 cut(s)	50, 787, 872, 1117
PkrI	GCNGC	5 cut(s)	375, 528, 1018, 1230, 1294
PleI	GAGTC	3 cut(s)	99, 786, 825
PluTI	GGCGCC	1 cut(s)	1156
PpsI	GAGTC	3 cut(s)	99, 786, 825
PsiI	TTATAA	2 cut(s)	9, 1202
PspFI	CCCAGC	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	1154, 1240
PspPI	GGNCC	2 cut(s)	263, 643
PstI	CTGCAG	2 cut(s)	1021, 1233
PsuI	RGATCY	3 cut(s)	858, 906, 1315
PvuII	CAGCTG	2 cut(s)	376, 659
RseI	CAYNNNNRTG	3 cut(s)	683, 740, 1029
SaqAI	TTAA	6 cut(s)	290, 413, 591, 629, 773, 933
SatI	GCNGC	5 cut(s)	374, 527, 1017, 1229, 1293
Sau3AI	GATC	3 cut(s)	858, 906, 1315
Sau96I	GGNCC	2 cut(s)	263, 643
SchI	GAGTC	3 cut(s)	100, 787, 826
ScrFI	CCNGG	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	741, 959, 1254
SfcI	CTRYAG	5 cut(s)	222, 366, 954, 1017, 1229
SfoI	GGCGCC	1 cut(s)	1154
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	3 cut(s)	683, 740, 1029
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
SphI	GCATGC	1 cut(s)	1028
Sse9I	AATT	7 cut(s)	4, 77, 453, 879, 1002, 1035, 1246
SsiI	CCGC	1 cut(s)	1293
SspDI	GGCGCC	1 cut(s)	1152
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	3 cut(s)	177, 269, 1029
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	4 cut(s)	65, 223, 400, 1207
TaiI	ACGT	2 cut(s)	472, 1352
TaqI	TCGA	1 cut(s)	1343
TasI	AATT	7 cut(s)	4, 77, 453, 879, 1002, 1035, 1246
TauI	GCSGC	1 cut(s)	1295
TfiI	GAWTC	4 cut(s)	50, 787, 872, 1117
Tru1I	TTAA	6 cut(s)	290, 413, 591, 629, 773, 933
Tru9I	TTAA	6 cut(s)	290, 413, 591, 629, 773, 933
TscAI	CASTG	6 cut(s)	60, 147, 468, 559, 685, 991
TseI	GCWGC	4 cut(s)	373, 526, 1016, 1228
TspDTI	ATGAA	9 cut(s)	17, 90, 144, 560, 840, 861, 1064, 1298, 1347
TspRI	CASTG	6 cut(s)	60, 147, 468, 559, 685, 991
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	2 cut(s)	526, 1028
XspI	CTAG	3 cut(s)	177, 269, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.