Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002198

Physical Location & Seq

Genomic Coordinates Forward (+)

4314505 .. 4318487

Gene Structure 3983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGAGTTGTTGTAAAGTGCCAGTTCTTATTGAAGCACAAGTTGAAATGGTGTCGGCTAATGAACTTGAGAACAAAAGCCTATTTAGGCAAGAAGAAGATGCCACACAAACTAAAGAAGCTTCTTTAATGGAGCAAGGATCACTTTCTACAAGTTTCCCCCAGCACACGCCTAAAGCACCAAAGAACAGCGTACTTAATAGCATAAAGATCGTGATTTTTTGTAATAAACTCAATCTACTACTACCTTTCGGTCCTCTAGCCATATTGGTCCACTACATGATAGATAGTAAGGGGTGGGTGTTCTTGCTGACGTTAGTAGGCATTACACCATTGGCTGAACGTCTAGGATATGCCACAGAGCAACTGGCTTGTTACACGGGTCCAACTGTTGGAGGCCTCTTAAATGCTACATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCTTTGAAAAATGGAATGATACGTGTTGTTCAGCTGACGTTACTAGGCTCAATTCTGTCTAACATGTTACTTGTACTTGGCTGCGCCTTCTTTTGTGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTCTTTGACAAAGGAATTGCTACTGTGAATTCAGGATTGCTTTTGATGGCTGTCATGGGGATACTCTTCCCGGCTGTTCTTCACTACACCCATAGCGAGGTTCATGCTGGATCATCAGAGCTAGCCCTGTCAAGGTTCAGCAGTTGCATAATGCTTATAGCTTATGCTGCTTACCTCTTCTTCCAGTTAAAGAGCCAATCTAATTCTTATAGCCCTCTCGATGAGGAATCAAATCAGAACGAAGAAACTTCTGCCGAAGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATCATTTGGCTTTCAATATTGACTGCTTGGGTCTCTCTTCTTTCTGGCTATCTTGTTGATGCCATAGAGGGTGCCTCAGTCTCATGGAATATACCAATAGCTTTTATCAGTACCATCTTGCTTCCTATAGTTGGGAACGCAGCTGAACATGCAGGGGCTATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTGGGAGTGGCTATTGGGTCCTCGATCCAGATTTCCATGTTTGCGGTCCCATTCTGCGTGGTGATTGGATGGATGATGGGTCAACAGATGGACCTTAACTTCCAGCTTTTTGAGACGGCGATGCTGTTCATCACTGTTATAGTAGTAGCATTTTTTCTCCAGGAAGGGTCATCGAATTACTTCAAAGGATTGATGCTGATTCTTTGTTATTTGATAGTAGCTGCCAGTTTCTTTGTACACGAAGATCCTCACCAAGATGGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051139 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

441

Amino Acids

48.21

Weight (kDa)

4.72

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	99 - 254	1e-21	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	289 - 430	8.1e-22	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55730 AT1G55730 AT3G13320
fragaria_vesca	FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200
malus_domestica	MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1
prunus_persica	Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1
pyrus_communis	pycom03g03100 pycom11g03540
rosa_chinensis	RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081
rosa_laevigata	RLG00000020827 RLG00000036528
rosa_multiflora	Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006540 Rroxscaffold_2G00093860
rosa_rugosa	Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100
rosa_samantha	Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700
rosa_wichuraiana	Rw2G042100 Rw5G045760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	935
AccB7I	CCANNNNNTGG	1 cut(s)	389
AciI	CCGC	1 cut(s)	1103
AclWI	GGATC	6 cut(s)	145, 691, 833, 1059, 1078, 1298
AcsI	RAATTY	1 cut(s)	601
AfaI	GTAC	4 cut(s)	192, 522, 976, 1296
AfiI	CCNNNNNNNGG	4 cut(s)	389, 670, 705, 995
AflIII	ACRYGT	2 cut(s)	469, 510
AgsI	TTSAA	5 cut(s)	32, 44, 454, 879, 1243
AjnI	CCWGG	1 cut(s)	1218
Alw26I	GTCTC	3 cut(s)	901, 949, 1166
AlwI	GGATC	6 cut(s)	145, 691, 833, 1059, 1078, 1298
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	4 cut(s)	528, 740, 1004, 1280
ApoI	RAATTY	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
Asp700I	GAANNNNTTC	1 cut(s)	1238
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	2 cut(s)	1132, 1301
AsuNHI	GCTAGC	1 cut(s)	694
AvaII	GGWCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
BanI	GGYRCC	1 cut(s)	935
BbvI	GCAGC	4 cut(s)	515, 727, 1016, 1267
BccI	CCATC	6 cut(s)	613, 986, 1122, 1129, 1141, 1310
BceAI	ACGGC	1 cut(s)	1191
BcgI	CGANNNNNNTGC	4 cut(s)	190, 224, 659, 693
BciT130I	CCWGG	1 cut(s)	1220
BciVI	GTATCC	1 cut(s)	627
BclI	TGATCA	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	3 cut(s)	901, 949, 1166
BfaI	CTAG	5 cut(s)	257, 344, 491, 551, 695
BfmI	CTRYAG	1 cut(s)	990
BfuI	GTATCC	1 cut(s)	627
BglII	AGATCT	1 cut(s)	846
BisI	GCNGC	4 cut(s)	529, 741, 1005, 1281
BlsI	GCNGC	4 cut(s)	530, 742, 1006, 1282
Bme1390I	CCNGG	2 cut(s)	644, 1220
Bme18I	GGWCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
BmgT120I	GGNCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
BmiI	GGNNCC	4 cut(s)	381, 937, 1078, 1107
BmrFI	CCNGG	2 cut(s)	644, 1220
BmsI	GCATC	4 cut(s)	88, 913, 1170, 1242
BmtI	GCTAGC	1 cut(s)	698
BplI	GAGNNNNNCTC	2 cut(s)	923, 955
BpmI	CTGGAG	1 cut(s)	1202
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	644
BsaAI	YACGTR	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	901
Bsc4I	CCNNNNNNNGG	4 cut(s)	389, 670, 705, 995
Bse1I	ACTGG	4 cut(s)	20, 369, 757, 1284
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	1 cut(s)	1220
BseGI	GGATG	2 cut(s)	1133, 1137
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	4 cut(s)	389, 670, 705, 995
BseMII	CTCAG	2 cut(s)	834, 954
BseNI	ACTGG	4 cut(s)	20, 369, 757, 1284
BseXI	GCAGC	4 cut(s)	515, 727, 1016, 1267
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	935
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	1091
BslI	CCNNNNNNNGG	4 cut(s)	389, 670, 705, 995
BsmAI	GTCTC	3 cut(s)	901, 949, 1166
BsmBI	CGTCTC	1 cut(s)	1166
BsmFI	GGGAC	1 cut(s)	1091
BsnI	GGCC	1 cut(s)	396
Bso31I	GGTCTC	1 cut(s)	901
Bsp1407I	TGTACA	1 cut(s)	1294
Bsp143I	GATC	9 cut(s)	137, 207, 432, 683, 838, 846, 1051, 1083, 1303
BspACI	CCGC	1 cut(s)	1103
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	2 cut(s)	835, 953
BspLI	GGNNCC	4 cut(s)	381, 937, 1078, 1107
BspOI	GCTAGC	1 cut(s)	698
BspPI	GGATC	6 cut(s)	145, 691, 833, 1059, 1078, 1298
BspT107I	GGYRCC	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	901
BsrGI	TGTACA	1 cut(s)	1294
BsrI	ACTGG	4 cut(s)	20, 369, 757, 1284
BssMI	GATC	9 cut(s)	137, 207, 432, 683, 838, 846, 1051, 1083, 1303
Bst2UI	CCWGG	1 cut(s)	1220
Bst4CI	ACNGT	3 cut(s)	388, 598, 1195
Bst6I	CTCTTC	3 cut(s)	644, 755, 906
BstAUI	TGTACA	1 cut(s)	1294
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	696
BstDEI	CTNAG	2 cut(s)	843, 940
BstF5I	GGATG	2 cut(s)	1133, 1137
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	9 cut(s)	140, 210, 435, 686, 841, 849, 1054, 1086, 1306
BstMAI	GTCTC	3 cut(s)	901, 949, 1166
BstMBI	GATC	9 cut(s)	137, 207, 432, 683, 838, 846, 1051, 1083, 1303
BstMWI	GCNNNNNNNGC	2 cut(s)	740, 1013
BstNI	CCWGG	1 cut(s)	1220
BstNSI	RCATGY	2 cut(s)	514, 1016
BstSCI	CCNGG	2 cut(s)	642, 1218
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	4 cut(s)	515, 727, 1016, 1267
BstX2I	RGATCY	4 cut(s)	838, 846, 1051, 1303
BstYI	RGATCY	4 cut(s)	838, 846, 1051, 1303
BsuI	GTATCC	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	1193
BtsCI	GGATG	2 cut(s)	1133, 1137
BtsIMutI	CAGTG	1 cut(s)	1191
Cac8I	GCNNGC	1 cut(s)	696
CfoI	GCGC	1 cut(s)	533
Cfr13I	GGNCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
Csp6I	GTAC	4 cut(s)	191, 521, 975, 1295
CviAII	CATG	9 cut(s)	277, 511, 628, 677, 948, 1013, 1027, 1036, 1096
CviQI	GTAC	4 cut(s)	191, 521, 975, 1295
DdeI	CTNAG	2 cut(s)	843, 940
DpnI	GATC	9 cut(s)	139, 209, 434, 685, 840, 848, 1053, 1085, 1305
DpnII	GATC	9 cut(s)	137, 207, 432, 683, 838, 846, 1051, 1083, 1303
Eam1104I	CTCTTC	3 cut(s)	644, 755, 906
EarI	CTCTTC	3 cut(s)	644, 755, 906
Eco147I	AGGCCT	1 cut(s)	396
Eco31I	GGTCTC	1 cut(s)	901
Eco47I	GGWCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
EcoO109I	RGGNCCY	1 cut(s)	1077
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	1218
Esp3I	CGTCTC	1 cut(s)	1166
FaeI	CATG	9 cut(s)	280, 514, 631, 680, 951, 1016, 1030, 1039, 1099
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	1091
FatI	CATG	9 cut(s)	276, 510, 627, 676, 947, 1012, 1026, 1035, 1095
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	4 cut(s)	529, 741, 1005, 1281
FokI	GGATG	2 cut(s)	1140, 1144
Fsp4HI	GCNGC	4 cut(s)	529, 741, 1005, 1281
FspBI	CTAG	5 cut(s)	257, 344, 491, 551, 695
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	4 cut(s)	529, 741, 1005, 1281
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	1202
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	1 cut(s)	644
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	9 cut(s)	280, 514, 631, 680, 951, 1016, 1030, 1039, 1099
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	1142
HindII	GTYRAC	1 cut(s)	1142
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	2 cut(s)	800, 1258
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	2 cut(s)	1132, 1301
Hpy166II	GTNNAC	3 cut(s)	271, 1142, 1297
Hpy188I	TCNGA	2 cut(s)	691, 810
Hpy188III	TCNNGA	6 cut(s)	211, 415, 606, 791, 842, 1087
Hpy8I	GTNNAC	3 cut(s)	271, 1142, 1297
HpyAV	CCTTC	2 cut(s)	544, 1217
HpyCH4III	ACNGT	3 cut(s)	388, 598, 1195
HpyCH4IV	ACGT	4 cut(s)	311, 340, 469, 485
HpyCH4V	TGCA	2 cut(s)	720, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	740, 1013
HpyF3I	CTNAG	2 cut(s)	843, 940
HpySE526I	ACGT	4 cut(s)	311, 340, 469, 485
Hsp92II	CATG	9 cut(s)	280, 514, 631, 680, 951, 1016, 1030, 1039, 1099
HspAI	GCGC	1 cut(s)	531
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	9 cut(s)	137, 207, 432, 683, 838, 846, 1051, 1083, 1303
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	4 cut(s)	515, 727, 1016, 1267
LweI	GCATC	4 cut(s)	88, 913, 1170, 1242
MaeI	CTAG	5 cut(s)	257, 344, 491, 551, 695
MaeII	ACGT	4 cut(s)	311, 340, 469, 485
MaeIII	GTNAC	4 cut(s)	371, 421, 486, 513
MalI	GATC	9 cut(s)	139, 209, 434, 685, 840, 848, 1053, 1085, 1305
MboI	GATC	9 cut(s)	137, 207, 432, 683, 838, 846, 1051, 1083, 1303
MflI	RGATCY	4 cut(s)	838, 846, 1051, 1303
MluCI	AATT	6 cut(s)	441, 498, 588, 601, 775, 1234
MmeI	TCCRAC	2 cut(s)	370, 407
MroXI	GAANNNNTTC	1 cut(s)	1238
MseI	TTAA	5 cut(s)	125, 195, 401, 761, 1155
MslI	CAYNNNNRTG	1 cut(s)	1314
MspA1I	CMGCKG	2 cut(s)	481, 1007
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	644, 1220
MvaI	CCWGG	1 cut(s)	1220
MwoI	GCNNNNNNNGC	2 cut(s)	740, 1013
NciI	CCSGG	1 cut(s)	644
NdeII	GATC	9 cut(s)	137, 207, 432, 683, 838, 846, 1051, 1083, 1303
NheI	GCTAGC	1 cut(s)	694
NlaIII	CATG	9 cut(s)	280, 514, 631, 680, 951, 1016, 1030, 1039, 1099
NlaIV	GGNNCC	4 cut(s)	381, 937, 1078, 1107
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	2 cut(s)	514, 1016
PceI	AGGCCT	1 cut(s)	396
PciI	ACATGT	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	1238
PfeI	GAWTC	2 cut(s)	800, 1258
PflFI	GACNNNGTC	1 cut(s)	572
PflMI	CCANNNNNTGG	1 cut(s)	389
PfoI	TCCNGGA	1 cut(s)	1218
PkrI	GCNGC	4 cut(s)	530, 742, 1006, 1282
Ppu21I	YACGTR	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	1077
PscI	ACATGT	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	1077
Psp6I	CCWGG	1 cut(s)	1218
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	1218
PspN4I	GGNNCC	4 cut(s)	381, 937, 1078, 1107
PspPI	GGNCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
PspPPI	RGGWCCY	1 cut(s)	1077
PsuI	RGATCY	4 cut(s)	838, 846, 1051, 1303
PsyI	GACNNNGTC	1 cut(s)	572
PvuII	CAGCTG	2 cut(s)	481, 1007
RsaI	GTAC	4 cut(s)	192, 522, 976, 1296
RsaNI	GTAC	4 cut(s)	191, 521, 975, 1295
RseI	CAYNNNNRTG	1 cut(s)	1314
SaqAI	TTAA	5 cut(s)	125, 195, 401, 761, 1155
SatI	GCNGC	4 cut(s)	529, 741, 1005, 1281
Sau3AI	GATC	9 cut(s)	137, 207, 432, 683, 838, 846, 1051, 1083, 1303
Sau96I	GGNCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
ScrFI	CCNGG	2 cut(s)	644, 1220
SfaNI	GCATC	4 cut(s)	88, 913, 1170, 1242
SfcI	CTRYAG	1 cut(s)	990
SinI	GGWCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
SmiMI	CAYNNNNRTG	1 cut(s)	1314
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	6 cut(s)	441, 498, 588, 601, 775, 1234
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	1103
SspI	AATATT	1 cut(s)	882
SspMI	CTAG	5 cut(s)	257, 344, 491, 551, 695
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	642, 1218
TaaI	ACNGT	3 cut(s)	388, 598, 1195
TaiI	ACGT	4 cut(s)	314, 343, 472, 488
TaqI	TCGA	3 cut(s)	792, 1082, 1232
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	6 cut(s)	441, 498, 588, 601, 775, 1234
TatI	WGTACW	2 cut(s)	520, 1294
TfiI	GAWTC	2 cut(s)	800, 1258
Tru1I	TTAA	5 cut(s)	125, 195, 401, 761, 1155
Tru9I	TTAA	5 cut(s)	125, 195, 401, 761, 1155
TscAI	CASTG	1 cut(s)	1198
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	4 cut(s)	528, 740, 1004, 1280
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	5 cut(s)	75, 665, 849, 1052, 1177
TspRI	CASTG	1 cut(s)	1198
Tth111I	GACNNNGTC	1 cut(s)	572
Van91I	CCANNNNNTGG	1 cut(s)	389
VpaK11BI	GGWCC	6 cut(s)	251, 268, 380, 1077, 1105, 1150
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	2 cut(s)	514, 1016
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	1238
XspI	CTAG	5 cut(s)	257, 344, 491, 551, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.