Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002198

Physical Location & Seq

Genomic Coordinates Forward (+)

10321364 .. 10325618

Gene Structure 4255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1134300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGATTCTGATAACCGTTACAACAACGACGACAACAAGAGCAGGAACAACGATGCATCCACAATAAAAATAAATTCTCATGTTGAGATGGGATCAACGCAATCCAAATCAGTGTTTGAGTTCGAGGATCAGAGCCTAGTTGGTCCCGAAAAACATTCTTTGGATGAGGCTCCCCTCAGAGCTCTATATTCTGGTGGTGCAAATGACTGCTGTCCCCATGTCCTGAAGAACAGTGTCGCTGATAGCATCAGGACTGTAGTTTTCTCTGCCAAAATTAACCTGCTCATGCCTTTTGGCCCTTTGGCAATCGTGGTTGATAAATTAACCGGTCATCATGGTTGGGTCTTTCTTTTAAGCTTGTTGGGAATCATACCCTTGGCTGAGAGATTAGGATACGCAACAGAGCAGCTGGCTTGCTATACTGGACCAACAGTTGGAGGTCTTTTAAATGCCACCTTTGGAAACGCAACGGAATTGATAATATCAATTTATGCTCTGAAACGCAGCATGATTCGTGTTGTTCAACAGTCCTTACTAGGCTCAATCCTGTCGAACATGCTGCTCGTGCTTGGATGTGCATTCTTCGCGGGTGGACTTGTGCATTCAAAGACGGAGCAAGTGTTCAACAAGGGAACTGCTGGAGTGAACTCTGGATTGCTATTGATGGCAGTCATGGGTCTGCTCTTTCCAGCAGTACTGCACTCTACTCGGACAGAGTTGCACTATGGGAAGTCTGAGTTATCCCTTTCGAGATTCACTAGCTGCATTATGCTCGTCGCCTATGCTTCATTTCTGTTTTTCCAATTGAGAAGCCAGCATAATTTGTATATTCCAGTTAATCAGGCAGAGGATCAGACCGAAGAAAATTCAGATGAGGAAGAGGCTCCTGAGATCACTAAGTGGGAATCCATAATATGGTTATCAATTCTGACTGCGTGGATTTCAGTCCTCTCGGAATACTTAGTTAACGCTATAGAGGGTGCATCTGTTGCAATGGGCATCCCGGTTGCATTTATTAGTGTTATTCTGCTCCCAATCGTTGGAAATGCAGCAGAGCACGCTGGTGCTGTTATGTTTGCCATGAAAGACAAGCTTGATATTACTTTGGGTGTGGCAATAGGCTCATCAACGCAGATCTCAATGTTTGGAATTCCGTTTTGTGTGGTGGTTGGGTGGTGCATGGGGTGCCCTATGGACTTAGATTTCCAACTGTTTGAGACAGCGACGCTTTTCATAACTGTTCTGGTGGTAGCCTTCATGCTGCAGGAGGGAACATCTAATTACTTCAAAGGACTAATGCTCATTCTTTGCTACATTATCGTCGCTGCGAGCTTCTTTGTACATAGAGATCCTAAAGCGATTCAGGATAAGCCCCAGAACCCGAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

464

Amino Acids

50.5

Weight (kDa)

5.3

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	113 - 269	1.6e-22	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	303 - 445	4.8e-22	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55730 AT1G55730 AT3G13320
fragaria_vesca	FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200
malus_domestica	MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1
prunus_persica	Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1
pyrus_communis	pycom03g03100 pycom11g03540
rosa_chinensis	RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081
rosa_laevigata	RLG00000020827 RLG00000036528
rosa_multiflora	Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006540 Rroxscaffold_2G00093860
rosa_rugosa	Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100
rosa_samantha	Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700
rosa_wichuraiana	Rw2G042100 Rw5G045760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	1185
AccB7I	CCANNNNNTGG	3 cut(s)	434, 915, 1040
AccII	CGCG	1 cut(s)	587
AciI	CCGC	1 cut(s)	587
AclWI	GGATC	4 cut(s)	100, 135, 858, 1343
AcsI	RAATTY	3 cut(s)	73, 865, 1149
AcuI	CTGAAG	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	900
AfaI	GTAC	2 cut(s)	696, 1341
AfiI	CCNNNNNNNGG	3 cut(s)	434, 915, 1040
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	4 cut(s)	524, 606, 625, 1288
AleI	CACNNNNGTG	1 cut(s)	1062
AloI	GAACNNNNNNTCC	2 cut(s)	605, 637
AluBI	AGCT	6 cut(s)	182, 357, 409, 762, 1093, 1332
AluI	AGCT	6 cut(s)	182, 357, 409, 762, 1093, 1332
Alw21I	GWGCWC	2 cut(s)	184, 1059
Alw26I	GTCTC	1 cut(s)	1211
AlwI	GGATC	4 cut(s)	100, 135, 858, 1343
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	7 cut(s)	406, 504, 559, 762, 1049, 1261, 1325
ApoI	RAATTY	3 cut(s)	73, 865, 1149
AsiGI	ACCGGT	1 cut(s)	326
AspS9I	GGNCC	3 cut(s)	143, 296, 425
AsuC2I	CCSGG	1 cut(s)	1004
AvaII	GGWCC	2 cut(s)	143, 425
BaeGI	GKGCMC	1 cut(s)	1190
BanI	GGYRCC	1 cut(s)	1185
BanII	GRGCYC	1 cut(s)	184
BauI	CACGAG	1 cut(s)	563
Bbv12I	GWGCWC	2 cut(s)	184, 1059
BbvI	GCAGC	7 cut(s)	418, 516, 546, 749, 1061, 1248, 1312
BccI	CCATC	2 cut(s)	82, 658
BcgI	CGANNNNNNTGC	6 cut(s)	541, 575, 689, 723, 754, 788
BciVI	GTATCC	1 cut(s)	386
BcnI	CCSGG	1 cut(s)	1004
BcoDI	GTCTC	1 cut(s)	1211
BfaI	CTAG	3 cut(s)	137, 536, 759
BfmI	CTRYAG	3 cut(s)	255, 972, 1262
BfuAI	ACCTGC	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	1134
BisI	GCNGC	7 cut(s)	407, 505, 560, 763, 1050, 1262, 1326
BlsI	GCNGC	7 cut(s)	408, 506, 561, 764, 1051, 1263, 1327
BmcAI	AGTACT	1 cut(s)	696
Bme1390I	CCNGG	1 cut(s)	1004
Bme18I	GGWCC	2 cut(s)	143, 425
BmgT120I	GGNCC	3 cut(s)	143, 296, 425
BmiI	GGNNCC	4 cut(s)	145, 171, 885, 1187
BmrFI	CCNGG	1 cut(s)	1004
BmsI	GCATC	5 cut(s)	43, 65, 255, 992, 1008
BoxI	GACNNNNGTC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	1004
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	605, 635
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 915, 1040
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	427, 833
Bse3DI	GCAATG	1 cut(s)	999
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	4 cut(s)	56, 169, 578, 999
BseLI	CCNNNNNNNGG	3 cut(s)	434, 915, 1040
BseMI	GCAATG	1 cut(s)	999
BseMII	CTCAG	4 cut(s)	190, 372, 726, 879
BseNI	ACTGG	2 cut(s)	427, 833
BseSI	GKGCMC	1 cut(s)	1190
BseXI	GCAGC	7 cut(s)	418, 516, 546, 749, 1061, 1248, 1312
BsgI	GTGCAG	1 cut(s)	683
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	1185
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	184, 1059
BsiSI	CCGG	2 cut(s)	327, 1004
BslFI	GGGAC	2 cut(s)	129, 198
BslI	CCNNNNNNNGG	3 cut(s)	434, 915, 1040
BsmAI	GTCTC	1 cut(s)	1211
BsmFI	GGGAC	2 cut(s)	129, 198
BsmI	GAATGC	2 cut(s)	578, 601
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	3 cut(s)	184, 1059, 1190
Bsp1407I	TGTACA	1 cut(s)	1339
Bsp143I	GATC	6 cut(s)	92, 127, 850, 891, 1134, 1348
BspACI	CCGC	1 cut(s)	587
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	4 cut(s)	189, 373, 727, 880
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	4 cut(s)	145, 171, 885, 1187
BspMAI	CTGCAG	1 cut(s)	1266
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	4 cut(s)	100, 135, 858, 1343
BspT107I	GGYRCC	1 cut(s)	1185
BsrDI	GCAATG	1 cut(s)	999
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	1339
BsrI	ACTGG	2 cut(s)	427, 833
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	6 cut(s)	92, 127, 850, 891, 1134, 1348
BssSI	CACGAG	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	563
Bst4CI	ACNGT	7 cut(s)	17, 233, 256, 433, 528, 1212, 1240
Bst6I	CTCTTC	1 cut(s)	873
BstAPI	GCANNNNNTGC	2 cut(s)	989, 1185
BstAUI	TGTACA	1 cut(s)	1339
BstC8I	GCNNGC	5 cut(s)	411, 415, 815, 1059, 1330
BstDEI	CTNAG	7 cut(s)	176, 381, 735, 888, 897, 961, 1198
BstF5I	GGATG	4 cut(s)	56, 169, 578, 999
BstFNI	CGCG	1 cut(s)	587
BstKTI	GATC	6 cut(s)	95, 130, 853, 894, 1137, 1351
BstMAI	GTCTC	1 cut(s)	1211
BstMBI	GATC	6 cut(s)	92, 127, 850, 891, 1134, 1348
BstMWI	GCNNNNNNNGC	5 cut(s)	565, 584, 989, 1058, 1185
BstNSI	RCATGY	1 cut(s)	559
BstPAI	GACNNNNGTC	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	1002
BstSFI	CTRYAG	3 cut(s)	255, 972, 1262
BstSLI	GKGCMC	1 cut(s)	1190
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	7 cut(s)	418, 516, 546, 749, 1061, 1248, 1312
BstX2I	RGATCY	2 cut(s)	1134, 1348
BstYI	RGATCY	2 cut(s)	1134, 1348
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	56, 169, 578, 999
BtsIMutI	CAGTG	2 cut(s)	117, 238
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	5 cut(s)	411, 415, 815, 1059, 1330
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	143, 296, 425
CseI	GACGC	1 cut(s)	1234
Csp6I	GTAC	2 cut(s)	695, 1340
CspAI	ACCGGT	1 cut(s)	326
CviQI	GTAC	2 cut(s)	695, 1340
DdeI	CTNAG	7 cut(s)	176, 381, 735, 888, 897, 961, 1198
DpnI	GATC	6 cut(s)	94, 129, 852, 893, 1136, 1350
DpnII	GATC	6 cut(s)	92, 127, 850, 891, 1134, 1348
DraI	TTTAAA	1 cut(s)	447
DraIII	CACNNNGTG	1 cut(s)	900
Eam1104I	CTCTTC	1 cut(s)	873
EarI	CTCTTC	1 cut(s)	873
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	143, 425
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	1149
EcoT14I	CCWWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	375
FalI	AAGNNNNNCTT	2 cut(s)	1077, 1109
FaqI	GGGAC	2 cut(s)	129, 198
FauI	CCCGC	1 cut(s)	580
Fnu4HI	GCNGC	7 cut(s)	407, 505, 560, 763, 1050, 1262, 1326
FokI	GGATG	4 cut(s)	43, 176, 585, 986
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	7 cut(s)	407, 505, 560, 763, 1050, 1262, 1326
FspBI	CTAG	3 cut(s)	137, 536, 759
GluI	GCNGC	7 cut(s)	407, 505, 560, 763, 1050, 1262, 1326
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	2 cut(s)	327, 1004
HgaI	GACGC	1 cut(s)	1234
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HindIII	AAGCTT	2 cut(s)	355, 1091
HinfI	GANTC	6 cut(s)	5, 366, 511, 753, 905, 1360
HpaI	GTTAAC	1 cut(s)	967
HpaII	CCGG	2 cut(s)	327, 1004
Hpy166II	GTNNAC	3 cut(s)	593, 646, 967
Hpy188III	TCNNGA	7 cut(s)	146, 223, 250, 651, 750, 887, 1364
Hpy8I	GTNNAC	3 cut(s)	593, 646, 967
Hpy99I	CGWCG	4 cut(s)	32, 779, 1228, 1325
HpyAV	CCTTC	1 cut(s)	1264
HpyCH4III	ACNGT	7 cut(s)	17, 233, 256, 433, 528, 1212, 1240
HpyF10VI	GCNNNNNNNGC	5 cut(s)	565, 584, 989, 1058, 1185
HpyF3I	CTNAG	7 cut(s)	176, 381, 735, 888, 897, 961, 1198
KspAI	GTTAAC	1 cut(s)	967
Kzo9I	GATC	6 cut(s)	92, 127, 850, 891, 1134, 1348
LmnI	GCTCC	4 cut(s)	175, 613, 889, 1035
Lsp1109I	GCAGC	7 cut(s)	418, 516, 546, 749, 1061, 1248, 1312
LweI	GCATC	5 cut(s)	43, 65, 255, 992, 1008
MaeI	CTAG	3 cut(s)	137, 536, 759
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	6 cut(s)	94, 129, 852, 893, 1136, 1350
MboI	GATC	6 cut(s)	92, 127, 850, 891, 1134, 1348
MboII	GAAGA	4 cut(s)	238, 574, 872, 890
MfeI	CAATTG	1 cut(s)	803
MflI	RGATCY	2 cut(s)	1134, 1348
MhlI	GDGCHC	3 cut(s)	184, 1059, 1190
MmeI	TCCRAC	3 cut(s)	415, 1021, 1231
Mph1103I	ATGCAT	1 cut(s)	58
MseI	TTAA	6 cut(s)	276, 323, 353, 446, 837, 966
MslI	CAYNNNNRTG	1 cut(s)	1062
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	2 cut(s)	327, 1004
MspR9I	CCNGG	1 cut(s)	1004
MunI	CAATTG	1 cut(s)	803
Mva1269I	GAATGC	2 cut(s)	578, 601
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	5 cut(s)	565, 584, 989, 1058, 1185
NciI	CCSGG	1 cut(s)	1004
NdeII	GATC	6 cut(s)	92, 127, 850, 891, 1134, 1348
NlaIV	GGNNCC	4 cut(s)	145, 171, 885, 1187
NsiI	ATGCAT	1 cut(s)	58
NspI	RCATGY	1 cut(s)	559
OliI	CACNNNNGTG	1 cut(s)	1062
PctI	GAATGC	2 cut(s)	578, 601
PfeI	GAWTC	6 cut(s)	5, 366, 511, 753, 905, 1360
PflMI	CCANNNNNTGG	3 cut(s)	434, 915, 1040
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	7 cut(s)	408, 506, 561, 764, 1051, 1263, 1327
PshAI	GACNNNNGTC	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	184
PspN4I	GGNNCC	4 cut(s)	145, 171, 885, 1187
PspPI	GGNCC	3 cut(s)	143, 296, 425
PstI	CTGCAG	1 cut(s)	1266
PsuI	RGATCY	2 cut(s)	1134, 1348
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	696, 1341
RsaNI	GTAC	2 cut(s)	695, 1340
RseI	CAYNNNNRTG	1 cut(s)	1062
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	6 cut(s)	276, 323, 353, 446, 837, 966
SatI	GCNGC	7 cut(s)	407, 505, 560, 763, 1050, 1262, 1326
Sau3AI	GATC	6 cut(s)	92, 127, 850, 891, 1134, 1348
Sau96I	GGNCC	3 cut(s)	143, 296, 425
ScaI	AGTACT	1 cut(s)	696
ScrFI	CCNGG	1 cut(s)	1004
SduI	GDGCHC	3 cut(s)	184, 1059, 1190
SetI	ASST	9 cut(s)	184, 282, 359, 411, 442, 458, 764, 1095, 1334
SfaNI	GCATC	5 cut(s)	43, 65, 255, 992, 1008
SfcI	CTRYAG	3 cut(s)	255, 972, 1262
SinI	GGWCC	2 cut(s)	143, 425
SmiMI	CAYNNNNRTG	1 cut(s)	1062
SsiI	CCGC	1 cut(s)	587
SspMI	CTAG	3 cut(s)	137, 536, 759
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	1002
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	7 cut(s)	17, 233, 256, 433, 528, 1212, 1240
TaqI	TCGA	3 cut(s)	123, 551, 749
TaqII	GACCGA	1 cut(s)	872
TatI	WGTACW	2 cut(s)	694, 1339
TfiI	GAWTC	6 cut(s)	5, 366, 511, 753, 905, 1360
Tru1I	TTAA	6 cut(s)	276, 323, 353, 446, 837, 966
Tru9I	TTAA	6 cut(s)	276, 323, 353, 446, 837, 966
TscAI	CASTG	2 cut(s)	117, 238
TseI	GCWGC	7 cut(s)	406, 504, 559, 762, 1049, 1261, 1325
TspDTI	ATGAA	4 cut(s)	777, 1097, 1222, 1246
TspGWI	ACGGA	3 cut(s)	485, 626, 1143
TspRI	CASTG	2 cut(s)	117, 238
Van91I	CCANNNNNTGG	3 cut(s)	434, 915, 1040
VpaK11BI	GGWCC	2 cut(s)	143, 425
XapI	RAATTY	3 cut(s)	73, 865, 1149
XceI	RCATGY	1 cut(s)	559
XspI	CTAG	3 cut(s)	137, 536, 759
ZrmI	AGTACT	1 cut(s)	696
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.