Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002198

Physical Location & Seq

Genomic Coordinates Forward (+)

3560349 .. 3565335

Gene Structure 4987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1041700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGATGAATTATAAGCCTGGAATCCAGTCTCAACTTGAAATGGAATCACTGGGTAAGGGATCAATACATGAGTTTGAGGATGAGAGTCTTTTTCCTCCAAAGACAGATGCTCAAAAGACAAGTTCTATTGAAGCTGTGGGAGAATGTTCGTTTTCAGGAGGTTCACAAGCTAGCGGTGATAAAGTGTGGAGGAATATTTTTTATAGAAGCATAAAGACTGTTGTTTTCTCAACTAAACTCAACTTGCTTATGCCTTTTGGACCGCTAGCGATATTTGTCTCTAAGCTAACCGGCCATAATGGCTGGGTCTTTGTTTTGAGCTTGTTGGGTATAACACCTTTAGCTGAGCGTTTAGGTTATGCTACCGAGCAGCTGGCATTCTATACTGGAGCTACTGTTGGGGGTCTTTTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCAATATATGCACTGAAACGTGGAATGTTACGCGTTGTTCAGCAGTCGTTATTAGGCTCTATTCTGTCAAACATGTTGCTGGTGCTTGGCTGTGCATTCTTCAGTGGTGGACTTGTTTTTCAAGAGAAAGAACAGGTGTTTAACAAGGCAACTGCTGTTGTGAATTCAGGCTTGCTGTTAATGGCAGTCATGGGCCTACTTTTTCCAGCTGTCTTGCACTACACTCACACTGAGGTGCATTTCGGAAAGTCAGAGTTGGCACTATCAAGATTTAGCAGCTGTGTCATGCTCCTGGCATATGCTGCTTATCTTTTCTTCCAGTTAAAGAGTCAGCATAATCAATATGTGCCTCTAAATGAGGAAGAGATTCAGAATGAAGAGAATGCAGATGACGATGAAGCTCCTGAGATATCTAAATGGGAATCAATAATTTGGCTATCAATAATGACTGCTTGGATCTCAATTGTATCCGAATATTTAGTTAATGCCATAGAGGGAGCATCTATAGCATGGAACATGCCAATTTCATTTATCAGCGTTATTTTGCTCCCAATTGTGGGTAATGCCGCAGAGCATGCCAGTGCTATTATGTTTGCCATGAAGGACAAGCTTGACATTTCTTTGGGAGTAGCAATAGGGTCGTCAACGCAGATATCCATGTTTGGGATTCCTTTCTGCGTGGTTGTTGGGTGGATTATGGGGCGCCCAATGGACTTGAACTTTCAGCTTTTTGAGACGGCAACCCTTTTCATTACTGTCTTAGTTGTAGCCTTCTTGCTGCAGGATGGAACCTCTAATTACTTCAAAGGGTTGATGCTTATTCTTTGTTATCTGATAGTTGCTGCAAGTTTCTTTGTTCACGTAGATCCTTCTCCGGCAGCAGAGGAAACGCAAACAAAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051139 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

451

Amino Acids

49.32

Weight (kDa)

5.04

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	102 - 257	1.4e-22	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	291 - 433	2.2e-23	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55730 AT1G55730 AT3G13320
fragaria_vesca	FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200
malus_domestica	MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1
prunus_persica	Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1
pyrus_communis	pycom03g03100 pycom11g03540
rosa_chinensis	RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081
rosa_laevigata	RLG00000020827 RLG00000036528
rosa_multiflora	Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006540 Rroxscaffold_2G00093860
rosa_rugosa	Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100
rosa_samantha	Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700
rosa_wichuraiana	Rw2G042100 Rw5G045760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	1149
AccII	CGCG	1 cut(s)	480
AciI	CCGC	3 cut(s)	174, 263, 1014
AclWI	GGATC	3 cut(s)	67, 911, 1307
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	532
AcyI	GRCGYC	1 cut(s)	1150
AfiI	CCNNNNNNNGG	3 cut(s)	1003, 1004, 1110
AflIII	ACRYGT	2 cut(s)	478, 519
AgsI	TTSAA	5 cut(s)	38, 131, 569, 1165, 1252
AjnI	CCWGG	2 cut(s)	16, 738
AleI	CACNNNNGTG	1 cut(s)	680
Alw26I	GTCTC	3 cut(s)	33, 283, 1175
AlwI	GGATC	3 cut(s)	67, 911, 1307
AoxI	GGCC	2 cut(s)	292, 640
ApeKI	GCWGC	6 cut(s)	370, 723, 749, 1225, 1289, 1325
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	1152
AspS9I	GGNCC	2 cut(s)	260, 640
AsuHPI	GGTGA	1 cut(s)	188
AsuNHI	GCTAGC	2 cut(s)	170, 265
AvaII	GGWCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	1149
BbvI	GCAGC	6 cut(s)	382, 735, 736, 1212, 1276, 1337
BccI	CCATC	1 cut(s)	1226
BceAI	ACGGC	1 cut(s)	1200
BcgI	CGANNNNNNTGC	2 cut(s)	1068, 1102
BciT130I	CCWGG	2 cut(s)	18, 740
BciVI	GTATCC	1 cut(s)	925
BcoDI	GTCTC	3 cut(s)	33, 283, 1175
BfaI	CTAG	2 cut(s)	171, 266
BfmI	CTRYAG	2 cut(s)	951, 1226
BfoI	RGCGCY	1 cut(s)	1153
BfuI	GTATCC	1 cut(s)	925
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	7 cut(s)	371, 724, 750, 1014, 1226, 1290, 1326
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	7 cut(s)	372, 725, 751, 1015, 1227, 1291, 1327
Bme1390I	CCNGG	2 cut(s)	18, 740
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	260, 640
BmiI	GGNNCC	2 cut(s)	1151, 1237
BmrFI	CCNGG	2 cut(s)	18, 740
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	3 cut(s)	97, 956, 1251
BmtI	GCTAGC	2 cut(s)	174, 269
BmuI	ACTGGG	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	1309
BsaHI	GRCGYC	1 cut(s)	1150
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	3 cut(s)	1003, 1004, 1110
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	5 cut(s)	25, 54, 391, 766, 1026
BseBI	CCWGG	2 cut(s)	18, 740
BseGI	GGATG	2 cut(s)	85, 1237
BseLI	CCNNNNNNNGG	3 cut(s)	1003, 1004, 1110
BseMII	CTCAG	3 cut(s)	336, 669, 843
BseNI	ACTGG	5 cut(s)	25, 54, 391, 766, 1026
BseXI	GCAGC	6 cut(s)	382, 735, 736, 1212, 1276, 1337
BseYI	CCCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	294, 642
BshNI	GGYRCC	1 cut(s)	1149
BsiSI	CCGG	2 cut(s)	291, 1322
BslI	CCNNNNNNNGG	3 cut(s)	1003, 1004, 1110
BsmAI	GTCTC	3 cut(s)	33, 283, 1175
BsmBI	CGTCTC	1 cut(s)	1175
BsmI	GAATGC	3 cut(s)	377, 542, 835
BsnI	GGCC	2 cut(s)	294, 642
Bsp143I	GATC	3 cut(s)	59, 903, 1312
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	3 cut(s)	174, 263, 1014
BspANI	GGCC	2 cut(s)	294, 642
BspCNI	CTCAG	3 cut(s)	337, 670, 844
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	1151, 1237
BspMAI	CTGCAG	1 cut(s)	1230
BspOI	GCTAGC	2 cut(s)	174, 269
BspPI	GGATC	3 cut(s)	67, 911, 1307
BspT107I	GGYRCC	1 cut(s)	1149
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	5 cut(s)	25, 54, 391, 766, 1026
BssAI	RCCGGY	1 cut(s)	290
BssMI	GATC	3 cut(s)	59, 903, 1312
BssNI	GRCGYC	1 cut(s)	1150
Bst2UI	CCWGG	2 cut(s)	18, 740
Bst4CI	ACNGT	3 cut(s)	220, 397, 1204
Bst6I	CTCTTC	2 cut(s)	804, 819
BstACI	GRCGYC	1 cut(s)	1150
BstAPI	GCANNNNNTGC	2 cut(s)	749, 1022
BstBAI	YACGTR	1 cut(s)	1309
BstC8I	GCNNGC	5 cut(s)	172, 267, 375, 620, 1023
BstDEI	CTNAG	5 cut(s)	282, 345, 678, 852, 1207
BstF5I	GGATG	2 cut(s)	85, 1237
BstFNI	CGCG	1 cut(s)	480
BstH2I	RGCGCY	1 cut(s)	1153
BstHHI	GCGC	1 cut(s)	1152
BstKTI	GATC	3 cut(s)	62, 906, 1315
BstMAI	GTCTC	3 cut(s)	33, 283, 1175
BstMBI	GATC	3 cut(s)	59, 903, 1312
BstMWI	GCNNNNNNNGC	4 cut(s)	300, 749, 953, 1022
BstNI	CCWGG	2 cut(s)	18, 740
BstNSI	RCATGY	3 cut(s)	523, 967, 1025
BstSCI	CCNGG	2 cut(s)	16, 738
BstSFI	CTRYAG	2 cut(s)	951, 1226
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	6 cut(s)	382, 735, 736, 1212, 1276, 1337
BstX2I	RGATCY	2 cut(s)	903, 1312
BstYI	RGATCY	2 cut(s)	903, 1312
BsuI	GTATCC	1 cut(s)	925
BsuRI	GGCC	2 cut(s)	294, 642
BtsCI	GGATG	2 cut(s)	85, 1237
BtsIMutI	CAGTG	5 cut(s)	47, 458, 556, 675, 1033
Cac8I	GCNNGC	5 cut(s)	172, 267, 375, 620, 1023
CfoI	GCGC	1 cut(s)	1152
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	260, 640
CviAII	CATG	9 cut(s)	68, 520, 637, 733, 957, 964, 1022, 1045, 1105
DdeI	CTNAG	5 cut(s)	282, 345, 678, 852, 1207
DinI	GGCGCC	1 cut(s)	1151
DpnI	GATC	3 cut(s)	61, 905, 1314
DpnII	GATC	3 cut(s)	59, 903, 1312
DraI	TTTAAA	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	804, 819
EarI	CTCTTC	2 cut(s)	804, 819
Eco32I	GATATC	2 cut(s)	858, 1101
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	16, 738
EcoRV	GATATC	2 cut(s)	858, 1101
EgeI	GGCGCC	1 cut(s)	1151
EheI	GGCGCC	1 cut(s)	1151
Esp3I	CGTCTC	1 cut(s)	1175
FaeI	CATG	9 cut(s)	71, 523, 640, 736, 960, 967, 1025, 1048, 1108
FatI	CATG	9 cut(s)	67, 519, 636, 732, 956, 963, 1021, 1044, 1104
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	7 cut(s)	371, 724, 750, 1014, 1226, 1290, 1326
FokI	GGATG	2 cut(s)	92, 1244
Fsp4HI	GCNGC	7 cut(s)	371, 724, 750, 1014, 1226, 1290, 1326
FspBI	CTAG	2 cut(s)	171, 266
GlaI	GCGC	1 cut(s)	1151
GluI	GCNGC	7 cut(s)	371, 724, 750, 1014, 1226, 1290, 1326
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	1153
HaeIII	GGCC	2 cut(s)	294, 642
HapII	CCGG	2 cut(s)	291, 1322
HhaI	GCGC	1 cut(s)	1152
Hin1I	GRCGYC	1 cut(s)	1150
Hin1II	CATG	9 cut(s)	71, 523, 640, 736, 960, 967, 1025, 1048, 1108
Hin6I	GCGC	1 cut(s)	1150
HinP1I	GCGC	1 cut(s)	1150
HincII	GTYRAC	1 cut(s)	1092
HindII	GTYRAC	1 cut(s)	1092
HindIII	AAGCTT	1 cut(s)	1055
HinfI	GANTC	7 cut(s)	21, 44, 85, 775, 814, 869, 1114
HpaII	CCGG	2 cut(s)	291, 1322
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	4 cut(s)	164, 557, 1092, 1306
Hpy188I	TCNGA	5 cut(s)	692, 700, 819, 919, 1281
Hpy188III	TCNNGA	4 cut(s)	156, 569, 714, 851
Hpy8I	GTNNAC	4 cut(s)	164, 557, 1092, 1306
HpyAV	CCTTC	3 cut(s)	1042, 1228, 1326
HpyCH4III	ACNGT	3 cut(s)	220, 397, 1204
HpyCH4IV	ACGT	3 cut(s)	466, 1308, 1349
HpyCH4V	TGCA	8 cut(s)	431, 458, 542, 664, 685, 833, 1228, 1292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	300, 749, 953, 1022
HpyF3I	CTNAG	5 cut(s)	282, 345, 678, 852, 1207
HpySE526I	ACGT	3 cut(s)	466, 1308, 1349
Hsp92I	GRCGYC	1 cut(s)	1150
Hsp92II	CATG	9 cut(s)	71, 523, 640, 736, 960, 967, 1025, 1048, 1108
HspAI	GCGC	1 cut(s)	1150
KasI	GGCGCC	1 cut(s)	1149
Kzo9I	GATC	3 cut(s)	59, 903, 1312
LmnI	GCTCC	5 cut(s)	389, 741, 853, 944, 999
Lsp1109I	GCAGC	6 cut(s)	382, 735, 736, 1212, 1276, 1337
LweI	GCATC	3 cut(s)	97, 956, 1251
MaeI	CTAG	2 cut(s)	171, 266
MaeII	ACGT	3 cut(s)	466, 1308, 1349
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	3 cut(s)	61, 905, 1314
MboI	GATC	3 cut(s)	59, 903, 1312
MboII	GAAGA	4 cut(s)	538, 754, 821, 836
MfeI	CAATTG	2 cut(s)	909, 999
MflI	RGATCY	2 cut(s)	903, 1312
MluCI	AATT	7 cut(s)	7, 610, 876, 909, 969, 999, 1243
MluI	ACGCGT	1 cut(s)	478
Mly113I	GGCGCC	1 cut(s)	1150
MlyI	GAGTC	2 cut(s)	94, 784
MroXI	GAANNNNTTC	1 cut(s)	813
MseI	TTAA	5 cut(s)	410, 588, 626, 770, 930
MslI	CAYNNNNRTG	2 cut(s)	680, 1026
MspA1I	CMGCKG	3 cut(s)	373, 656, 726
MspI	CCGG	2 cut(s)	291, 1322
MspR9I	CCNGG	2 cut(s)	18, 740
MunI	CAATTG	2 cut(s)	909, 999
Mva1269I	GAATGC	3 cut(s)	377, 542, 835
MvaI	CCWGG	2 cut(s)	18, 740
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	300, 749, 953, 1022
NarI	GGCGCC	1 cut(s)	1150
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	3 cut(s)	59, 903, 1312
NheI	GCTAGC	2 cut(s)	170, 265
NlaIII	CATG	9 cut(s)	71, 523, 640, 736, 960, 967, 1025, 1048, 1108
NlaIV	GGNNCC	2 cut(s)	1151, 1237
NspI	RCATGY	3 cut(s)	523, 967, 1025
OliI	CACNNNNGTG	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	1025
PciI	ACATGT	1 cut(s)	519
PctI	GAATGC	3 cut(s)	377, 542, 835
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	5 cut(s)	21, 44, 814, 869, 1114
PkrI	GCNGC	7 cut(s)	372, 725, 751, 1015, 1227, 1291, 1327
PleI	GAGTC	2 cut(s)	93, 783
PluTI	GGCGCC	1 cut(s)	1153
PpsI	GAGTC	2 cut(s)	93, 783
Ppu21I	YACGTR	1 cut(s)	1309
PscI	ACATGT	1 cut(s)	519
PsiI	TTATAA	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	16, 738
PspFI	CCCAGC	1 cut(s)	303
PspGI	CCWGG	2 cut(s)	16, 738
PspN4I	GGNNCC	2 cut(s)	1151, 1237
PspPI	GGNCC	2 cut(s)	260, 640
PstI	CTGCAG	1 cut(s)	1230
PsuI	RGATCY	2 cut(s)	903, 1312
PvuII	CAGCTG	3 cut(s)	373, 656, 726
RseI	CAYNNNNRTG	2 cut(s)	680, 1026
SaqAI	TTAA	5 cut(s)	410, 588, 626, 770, 930
SatI	GCNGC	7 cut(s)	371, 724, 750, 1014, 1226, 1290, 1326
Sau3AI	GATC	3 cut(s)	59, 903, 1312
Sau96I	GGNCC	2 cut(s)	260, 640
SchI	GAGTC	2 cut(s)	94, 784
ScrFI	CCNGG	2 cut(s)	18, 740
SfaNI	GCATC	3 cut(s)	97, 956, 1251
SfcI	CTRYAG	2 cut(s)	951, 1226
SfoI	GGCGCC	1 cut(s)	1151
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	680, 1026
SphI	GCATGC	1 cut(s)	1025
Sse9I	AATT	7 cut(s)	7, 610, 876, 909, 969, 999, 1243
SsiI	CCGC	3 cut(s)	174, 263, 1014
SspDI	GGCGCC	1 cut(s)	1149
SspI	AATATT	2 cut(s)	196, 923
SspMI	CTAG	2 cut(s)	171, 266
StyD4I	CCNGG	2 cut(s)	16, 738
TaaI	ACNGT	3 cut(s)	220, 397, 1204
TaiI	ACGT	3 cut(s)	469, 1311, 1352
TasI	AATT	7 cut(s)	7, 610, 876, 909, 969, 999, 1243
TauI	GCSGC	1 cut(s)	1016
TfiI	GAWTC	5 cut(s)	21, 44, 814, 869, 1114
Tru1I	TTAA	5 cut(s)	410, 588, 626, 770, 930
Tru9I	TTAA	5 cut(s)	410, 588, 626, 770, 930
TscAI	CASTG	5 cut(s)	54, 465, 556, 682, 1033
TseI	GCWGC	6 cut(s)	370, 723, 749, 1225, 1289, 1325
TspDTI	ATGAA	6 cut(s)	20, 837, 858, 963, 1061, 1186
TspRI	CASTG	5 cut(s)	54, 465, 556, 682, 1033
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	3 cut(s)	523, 967, 1025
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	2 cut(s)	171, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.