Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002198

Physical Location & Seq

Genomic Coordinates Reverse (-)

35065145 .. 35070267

Gene Structure 5123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41890.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGAATCAAAAGACAACGAATCGTTACATGAATTCGAAGATGAAATTCTTTCTATTCCGGAGATGAAGGGTCAGAAGTCGCAACCCATTCAAGCATTGGGGGAAGGATCATTTTCGGGAGGTTTACAAGCTAGGGGCAATAAAATGTGGAGGAATGCTGTTTGTAAGAGCATAAAGACTGTAGTTTTCTCAAATAAACTCAACATGCTTATGCCTTTTGGACCTCTGGCAATTTTTGTCCATATCTTTACCGGCCATAATGGGTGGGTCTTTTTCTTGACCTTGTTGGGTATAACTCCTTTGGCTGAGCGTTTAGGTTATGCTACAGAGCAGCTGGCATTCTATACTGGACCTACTGTTGGGGGTCTTTTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCAATTTATGCACTGAAACATGGAATGTTACGCGTTGTTCAGCAGTCATTATTAGGCTCTATTCTGTCAAATATGCTTCTGGTGCTTGGATGTGCATTCTTCAGTGGTGGGCTTGTTTTTCAAGAAAAGGAACAAGTGTTTGACAAGGCAACTGCTGTCATGAACTCAGGCTTGCTATTAATGGCAGTCATGGGGCTACTTTTCCCAGCTGTTCTGCACTTCACTCACACGGAGGTGCATTTTGGGAAGTCAGAGTTGGCACTTTCAAGGTTTAGCAGTTGTATCATGCTTCTAGCATATGCCACATATCTTTTCTACCAGTTAAAGAGTCAAAAGAATCAATATGTTCCTCTAAATGAGGAAGGGGCTCAAAATGAAGAGAACTCCGATGATGATGATGAGACTCCAGAGATCTCTAAATGGGAATCAATAATTTGGCTTGTAATAATGACGAGTTGGATCTCGTTCCTATCAGAATATTTAGTTAATGCCATAGAGGGAGCATCTGTATCATGGAAAATTCCTATTTCATTTATTAGTGTTATCTTGCTCCCAATTGTGGGTAATGCTGCAGAGCATGCTAGTGCTGTTATGTTTGCCATGAAAGACAAGCTTGACATTTCATTGGGAGTGGCAATAGGGTCATCGACGCAGATATCTATGTTTGGGATTCCTTTTTGTGTAGTTATTGGGTGGATTATGGGACGGCCTATGGATTTGAACTTTCAACTCTTTGAGACAGCAACACTTTTTATAACCGTCTTAGTTGTAGCCTTTCTACTGCAGGATGGAACCTCTAATTACTTTAAAGGGTTGATGCTTATTCTTTGTTATCTGATAGTTGCTGCAAGTTTCTTTGTTCATGTAGATCCTTCAGCTGCAGATGCAGGGTTAAAACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051139 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

437

Amino Acids

47.92

Weight (kDa)

5.15

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	97 - 252	6e-22	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	287 - 429	5.8e-25	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55730 AT1G55730 AT3G13320
fragaria_vesca	FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200
malus_domestica	MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1
prunus_persica	Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1
pyrus_communis	pycom03g03100 pycom11g03540
rosa_chinensis	RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081
rosa_laevigata	RLG00000020827 RLG00000036528
rosa_multiflora	Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006540 Rroxscaffold_2G00093860
rosa_rugosa	Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100
rosa_samantha	Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700
rosa_wichuraiana	Rw2G042100 Rw5G045760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1163
AccII	CGCG	1 cut(s)	441
AccIII	TCCGGA	1 cut(s)	58
AclWI	GGATC	3 cut(s)	115, 875, 1271
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	3 cut(s)	32, 45, 927
AcuI	CTGAAG	2 cut(s)	493, 1266
AfiI	CCNNNNNNNGG	3 cut(s)	359, 967, 968
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	92, 530, 675, 1129, 1136
AjuI	GAANNNNNNNTTGG	2 cut(s)	647, 679
AleI	CACNNNNGTG	1 cut(s)	641
AluBI	AGCT	5 cut(s)	131, 334, 617, 1021, 1286
AluI	AGCT	5 cut(s)	131, 334, 617, 1021, 1286
Alw26I	GTCTC	2 cut(s)	803, 1139
AlwI	GGATC	3 cut(s)	115, 875, 1271
Aor13HI	TCCGGA	1 cut(s)	58
AoxI	GGCC	2 cut(s)	253, 1115
ApeKI	GCWGC	4 cut(s)	331, 977, 1253, 1286
ApoI	RAATTY	3 cut(s)	32, 45, 927
AseI	ATTAAT	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	221, 350
AsuII	TTCGAA	1 cut(s)	36
AvaII	GGWCC	2 cut(s)	221, 350
BanII	GRGCYC	1 cut(s)	778
BbvI	GCAGC	4 cut(s)	343, 964, 1240, 1273
BccI	CCATC	1 cut(s)	1190
BceAI	ACGGC	1 cut(s)	1130
BcoDI	GTCTC	2 cut(s)	803, 1139
BfaI	CTAG	3 cut(s)	132, 701, 990
BfmI	CTRYAG	5 cut(s)	180, 324, 978, 1190, 1287
BglII	AGATCT	1 cut(s)	819
BisI	GCNGC	4 cut(s)	332, 978, 1254, 1287
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	4 cut(s)	333, 979, 1255, 1288
Bme18I	GGWCC	2 cut(s)	221, 350
BmgT120I	GGNCC	2 cut(s)	221, 350
BmiI	GGNNCC	1 cut(s)	1201
BmsI	GCATC	3 cut(s)	920, 1215, 1282
BpmI	CTGGAG	1 cut(s)	798
Bpu1102I	GCTNAGC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 967, 968
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	352, 727
BseAI	TCCGGA	1 cut(s)	58
BseGI	GGATG	2 cut(s)	503, 1201
BseLI	CCNNNNNNNGG	3 cut(s)	359, 967, 968
BseMII	CTCAG	2 cut(s)	297, 588
BseNI	ACTGG	2 cut(s)	352, 727
BseXI	GCAGC	4 cut(s)	343, 964, 1240, 1273
BseYI	CCCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	2 cut(s)	255, 1117
BsiSI	CCGG	2 cut(s)	59, 252
BslFI	GGGAC	1 cut(s)	1125
BslI	CCNNNNNNNGG	3 cut(s)	359, 967, 968
BsmAI	GTCTC	2 cut(s)	803, 1139
BsmFI	GGGAC	1 cut(s)	1125
BsmI	GAATGC	3 cut(s)	160, 338, 503
BsnI	GGCC	2 cut(s)	255, 1117
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp13I	TCCGGA	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	107, 819, 867, 1276
Bsp1720I	GCTNAGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	255, 1117
BspCNI	CTCAG	2 cut(s)	298, 587
BspEI	TCCGGA	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	1201
BspMAI	CTGCAG	3 cut(s)	982, 1194, 1291
BspPI	GGATC	3 cut(s)	115, 875, 1271
BspT104I	TTCGAA	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	352, 727
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	4 cut(s)	107, 819, 867, 1276
Bst4CI	ACNGT	4 cut(s)	181, 358, 1168, 1308
Bst6I	CTCTTC	1 cut(s)	780
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	336, 581, 987
BstDEI	CTNAG	3 cut(s)	306, 574, 1171
BstF5I	GGATG	2 cut(s)	503, 1201
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	4 cut(s)	110, 822, 870, 1279
BstMAI	GTCTC	2 cut(s)	803, 1139
BstMBI	GATC	4 cut(s)	107, 819, 867, 1276
BstMWI	GCNNNNNNNGC	3 cut(s)	490, 986, 1292
BstNSI	RCATGY	2 cut(s)	208, 989
BstSFI	CTRYAG	5 cut(s)	180, 324, 978, 1190, 1287
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	4 cut(s)	343, 964, 1240, 1273
BstX2I	RGATCY	3 cut(s)	819, 867, 1276
BstYI	RGATCY	3 cut(s)	819, 867, 1276
BsuRI	GGCC	2 cut(s)	255, 1117
BtsCI	GGATG	2 cut(s)	503, 1201
BtsIMutI	CAGTG	2 cut(s)	419, 517
Cac8I	GCNNGC	3 cut(s)	336, 581, 987
CciI	TCATGA	1 cut(s)	567
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	221, 350
CseI	GACGC	1 cut(s)	1066
DdeI	CTNAG	3 cut(s)	306, 574, 1171
DpnI	GATC	4 cut(s)	109, 821, 869, 1278
DpnII	GATC	4 cut(s)	107, 819, 867, 1276
DraI	TTTAAA	2 cut(s)	372, 1216
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	778
Eco32I	GATATC	1 cut(s)	1065
Eco47I	GGWCC	2 cut(s)	221, 350
Eco57I	CTGAAG	2 cut(s)	493, 1266
EcoRI	GAATTC	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	1065
EcoT38I	GRGCYC	1 cut(s)	778
FalI	AAGNNNNNCTT	2 cut(s)	1005, 1037
FaqI	GGGAC	1 cut(s)	1125
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	4 cut(s)	332, 978, 1254, 1287
FokI	GGATG	2 cut(s)	510, 1208
FriOI	GRGCYC	1 cut(s)	778
Fsp4HI	GCNGC	4 cut(s)	332, 978, 1254, 1287
FspBI	CTAG	3 cut(s)	132, 701, 990
GluI	GCNGC	4 cut(s)	332, 978, 1254, 1287
GsaI	CCCAGC	1 cut(s)	617
GsuI	CTGGAG	1 cut(s)	798
HaeIII	GGCC	2 cut(s)	255, 1117
HapII	CCGG	2 cut(s)	59, 252
HgaI	GACGC	1 cut(s)	1066
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	7 cut(s)	5, 20, 736, 745, 811, 833, 1078
HpaII	CCGG	2 cut(s)	59, 252
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	5 cut(s)	75, 661, 796, 883, 1245
Hpy188III	TCNNGA	6 cut(s)	59, 117, 277, 530, 568, 815
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	1060
HpyAV	CCTTC	4 cut(s)	61, 98, 764, 1290
HpyCH4III	ACNGT	4 cut(s)	181, 358, 1168, 1308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	490, 986, 1292
HpyF3I	CTNAG	3 cut(s)	306, 574, 1171
Kpn2I	TCCGGA	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	107, 819, 867, 1276
LmnI	GCTCC	2 cut(s)	908, 963
Lsp1109I	GCAGC	4 cut(s)	343, 964, 1240, 1273
LweI	GCATC	3 cut(s)	920, 1215, 1282
MaeI	CTAG	3 cut(s)	132, 701, 990
MaeIII	GTNAC	2 cut(s)	24, 435
MalI	GATC	4 cut(s)	109, 821, 869, 1278
MboI	GATC	4 cut(s)	107, 819, 867, 1276
MboII	GAAGA	3 cut(s)	50, 499, 797
MfeI	CAATTG	1 cut(s)	963
MflI	RGATCY	3 cut(s)	819, 867, 1276
MhlI	GDGCHC	1 cut(s)	778
MluCI	AATT	8 cut(s)	32, 45, 231, 411, 840, 927, 963, 1207
MluI	ACGCGT	1 cut(s)	439
MlyI	GAGTC	2 cut(s)	745, 805
MmeI	TCCRAC	1 cut(s)	845
MnlI	CCTC	8 cut(s)	113, 144, 234, 634, 760, 768, 898, 1213
MroI	TCCGGA	1 cut(s)	58
MseI	TTAA	6 cut(s)	371, 587, 731, 894, 1215, 1301
MslI	CAYNNNNRTG	3 cut(s)	209, 641, 990
MspA1I	CMGCKG	3 cut(s)	334, 617, 1286
MspI	CCGG	2 cut(s)	59, 252
MunI	CAATTG	1 cut(s)	963
Mva1269I	GAATGC	3 cut(s)	160, 338, 503
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	3 cut(s)	490, 986, 1292
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	4 cut(s)	107, 819, 867, 1276
NlaIV	GGNNCC	1 cut(s)	1201
NspI	RCATGY	2 cut(s)	208, 989
NspV	TTCGAA	1 cut(s)	36
OliI	CACNNNNGTG	1 cut(s)	641
PaeI	GCATGC	1 cut(s)	989
PagI	TCATGA	1 cut(s)	567
PctI	GAATGC	3 cut(s)	160, 338, 503
PfeI	GAWTC	5 cut(s)	5, 20, 745, 833, 1078
PkrI	GCNGC	4 cut(s)	333, 979, 1255, 1288
PleI	GAGTC	2 cut(s)	744, 805
PpsI	GAGTC	2 cut(s)	744, 805
PshBI	ATTAAT	1 cut(s)	587
PsiI	TTATAA	1 cut(s)	1163
PspFI	CCCAGC	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	1201
PspPI	GGNCC	2 cut(s)	221, 350
PstI	CTGCAG	3 cut(s)	982, 1194, 1291
PsuI	RGATCY	3 cut(s)	819, 867, 1276
PvuII	CAGCTG	3 cut(s)	334, 617, 1286
RseI	CAYNNNNRTG	3 cut(s)	209, 641, 990
SaqAI	TTAA	6 cut(s)	371, 587, 731, 894, 1215, 1301
SatI	GCNGC	4 cut(s)	332, 978, 1254, 1287
Sau3AI	GATC	4 cut(s)	107, 819, 867, 1276
Sau96I	GGNCC	2 cut(s)	221, 350
SchI	GAGTC	2 cut(s)	745, 805
SduI	GDGCHC	1 cut(s)	778
SfaNI	GCATC	3 cut(s)	920, 1215, 1282
SfcI	CTRYAG	5 cut(s)	180, 324, 978, 1190, 1287
SfuI	TTCGAA	1 cut(s)	36
SinI	GGWCC	2 cut(s)	221, 350
SmiMI	CAYNNNNRTG	3 cut(s)	209, 641, 990
SphI	GCATGC	1 cut(s)	989
Sse9I	AATT	8 cut(s)	32, 45, 231, 411, 840, 927, 963, 1207
SspI	AATATT	1 cut(s)	887
SspMI	CTAG	3 cut(s)	132, 701, 990
TaaI	ACNGT	4 cut(s)	181, 358, 1168, 1308
TaqI	TCGA	2 cut(s)	36, 1055
TasI	AATT	8 cut(s)	32, 45, 231, 411, 840, 927, 963, 1207
TfiI	GAWTC	5 cut(s)	5, 20, 745, 833, 1078
Tru1I	TTAA	6 cut(s)	371, 587, 731, 894, 1215, 1301
Tru9I	TTAA	6 cut(s)	371, 587, 731, 894, 1215, 1301
TscAI	CASTG	2 cut(s)	426, 517
TseI	GCWGC	4 cut(s)	331, 977, 1253, 1286
TspDTI	ATGAA	9 cut(s)	45, 57, 80, 584, 798, 927, 1020, 1025, 1259
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	426, 517
VpaK11BI	GGWCC	2 cut(s)	221, 350
VspI	ATTAAT	1 cut(s)	587
XapI	RAATTY	3 cut(s)	32, 45, 927
XceI	RCATGY	2 cut(s)	208, 989
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	3 cut(s)	132, 701, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.