FvH4_6g40200

Vacuolar cation proton exchanger

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
31740470 .. 31745955
5486 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40200.t1

Sequence Viewer

Length: 1452 bp
ATGGATACTGAAGCTAAGGATCCAGCCACAGTTAGATTACATTCGCACGTTGAGATGGGGTCGATGGAGCTCAAGTCGATATTGGGATACGATGATCAGGGCTTAGTTGCTGCTCCTGAGAAAAAGGATGAGTCTCCCCTCAAGACTCTATATTCTAGTGGTTCAGGAAGCTTTGAGCCTCCACTCAAAGCTCTATATTCTAGTGGTTCAGGAACCTTTGAGCCTAACCTCAAAGCTCTATATACTAGTGGTTCAGGAAGCTATTATCGCAGGGTCATGAAGAATACTGTGGTTAATAGCATCAGAACTGTAGTTTTCTCCTCAAGACTTAACTTGCTCATGCCTTTTGGCCCATTAGCAATCGTAGTTGATAAAGTGACTAGCCATCATGGCTGGGTCTTCCTTCTAAGCTTGTTGGGCATCATACCTTTGGCGGAGCGGTTAGGATATGCTACAGAGCAGCTGGCCTGCTACACAGGACCTACAGTTGGAGGCCTTCTAAATGCCACTTTTGGAAATGCCACAGAATTGATTATCTCAATATATGCTCTAAGAAATGGCATGATTCGCGTTGTTCAACAGTCTTTACTGGGCTCAATCCTGTCAAACATGTTGCTTGTACTTGGATGTGCATTCTTTGCTGGTGGACTTGTGTTTTCTACGAGGCCACAAGTGTTCAACAAGCCAACTGCTGCTGTGAACTCTGGATTGCTGTTGATGGCAGTCATGGGTCTTCTCTTTCCAGCTTTACTTCACAGTACTCACACAGAGTTGCACTTTGGGAAGTCTGAACTAGCCCTTTCAAGGTTTACTAGCTGCATTATGCTTGTGGCATACGCTTCGTATCTGTTTTTTCAGCTGAAGAGCCAGCGGAGTCTATATGTCCCAGTTGATGAGCAGGGGGAGGAGATTCACAGTGACGCCAGTGATGATGACAATGAGGTTCCTGAAATCACTAAATGTGAATCCATAATTTGGCTCACTATTCTAACTGCATGGATTTCAGTCCTATCAGAATATTTAGTTAATGCGATAGAGGGTGCGTCTATTGCAATGAATATTCCCGTCGCATTTATCAGTGTTATTTTGCTCCCAATAGTTGGGAATGCAGCAGAGCATGCAGGTGCTGTTATGTTTGCCATGAAAGACAAGCTTGATATAACTTTGGGAGTGGCCATAGGCTCGTCAACGCAGATATCTATGTTTGGAATTCCCTTTTGTGTGATGGTTGGGTGGTCAATGGGGGTCTCTATGGACTTGAATTTCCAACTGTTTGAGACAGCTGTTCTTTTCATAACTGTTCTGGTGGTAGCTTTCATGCTACAGGAGGGAACTTCTAACTACTTCAAAGGACTAATGCTCATTCTTTGCTACATTATTGTTGCTGGAAGTTTCTTTGTACATATAGACCCTACTGCAATCCAGGACAAGCCCCCTGAGACAGATGACTAA

Protein Analysis

484

Amino Acids

52.35

Weight (kDa)

5.17

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 131 - 287 6.4e-23 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 323 - 462 6.2e-21 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1112
Acc36I ACCTGC 1 cut(s) 1112
AccB7I CCANNNNNTGG 2 cut(s) 975, 1100
AccBSI CCGCTC 1 cut(s) 439
AccII CGCG 1 cut(s) 570
AciI CCGC 3 cut(s) 434, 439, 871
AclWI GGATC 2 cut(s) 14, 27
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 2 cut(s) 1209, 1261
AcuI CTGAAG 2 cut(s) 30, 881
AcyI GRCGYC 1 cut(s) 921
AfaI GTAC 3 cut(s) 621, 760, 1401
AfiI CCNNNNNNNGG 4 cut(s) 488, 804, 975, 1100
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 5 cut(s) 578, 679, 804, 1261, 1348
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 1 cut(s) 1422
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 4 cut(s) 138, 1252, 1271, 1433
AlwI GGATC 2 cut(s) 14, 27
AlwNI CAGNNNCTG 1 cut(s) 1127
AoxI GGCC 5 cut(s) 349, 465, 493, 665, 1173
ApeKI GCWGC 5 cut(s) 110, 460, 692, 816, 1109
ApoI RAATTY 2 cut(s) 1209, 1261
AspS9I GGNCC 2 cut(s) 350, 479
AvaII GGWCC 1 cut(s) 479
BalI TGGCCA 1 cut(s) 1175
BamHI GGATCC 1 cut(s) 19
BanII GRGCYC 2 cut(s) 72, 596
BbsI GAAGAC 2 cut(s) 391, 725
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 5 cut(s) 97, 472, 679, 803, 1121
BccI CCATC 5 cut(s) 49, 58, 393, 712, 1219
BcgI CGANNNNNNTGC 2 cut(s) 822, 856
BciT130I CCWGG 1 cut(s) 1424
BciVI GTATCC 1 cut(s) 80
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 4 cut(s) 138, 1252, 1271, 1433
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 6 cut(s) 156, 201, 246, 381, 794, 813
BfmI CTRYAG 4 cut(s) 309, 453, 483, 1322
BfuAI ACCTGC 1 cut(s) 1112
BfuI GTATCC 1 cut(s) 80
BglI GCCNNNNNGGC 1 cut(s) 390
BisI GCNGC 5 cut(s) 111, 461, 693, 817, 1110
BlsI GCNGC 5 cut(s) 112, 462, 694, 818, 1111
BmcAI AGTACT 1 cut(s) 760
Bme1390I CCNGG 1 cut(s) 1424
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 350, 479
BmiI GGNNCC 3 cut(s) 21, 214, 945
BmrFI CCNGG 1 cut(s) 1424
BmrI ACTGGG 2 cut(s) 599, 881
BmsI GCATC 2 cut(s) 309, 429
BmuI ACTGGG 2 cut(s) 599, 881
BpiI GAAGAC 2 cut(s) 391, 725
Bpu10I CCTNAGC 1 cut(s) 15
BpuEI CTTGAG 3 cut(s) 56, 125, 307
BsaHI GRCGYC 1 cut(s) 921
BsaI GGTCTC 1 cut(s) 1252
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 4 cut(s) 488, 804, 975, 1100
Bse1I ACTGG 3 cut(s) 594, 887, 924
Bse3DI GCAATG 1 cut(s) 1059
BseBI CCWGG 1 cut(s) 1424
BseGI GGATG 2 cut(s) 133, 632
BseLI CCNNNNNNNGG 4 cut(s) 488, 804, 975, 1100
BseMI GCAATG 1 cut(s) 1059
BseMII CTCAG 2 cut(s) 108, 1428
BseNI ACTGG 3 cut(s) 594, 887, 924
BseRI GAGGAG 2 cut(s) 310, 920
BseXI GCAGC 5 cut(s) 97, 472, 679, 803, 1121
BseYI CCCAGC 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 5 cut(s) 351, 467, 495, 667, 1175
BsiHKAI GWGCWC 1 cut(s) 72
BslFI GGGAC 1 cut(s) 869
BslI CCNNNNNNNGG 4 cut(s) 488, 804, 975, 1100
BsmAI GTCTC 4 cut(s) 138, 1252, 1271, 1433
BsmFI GGGAC 1 cut(s) 869
BsmI GAATGC 2 cut(s) 632, 1111
BsnI GGCC 5 cut(s) 351, 467, 495, 667, 1175
Bso31I GGTCTC 1 cut(s) 1252
Bsp1286I GDGCHC 2 cut(s) 72, 596
Bsp1407I TGTACA 1 cut(s) 1399
Bsp143I GATC 2 cut(s) 19, 94
BspACI CCGC 3 cut(s) 434, 439, 871
BspANI GGCC 5 cut(s) 351, 467, 495, 667, 1175
BspCNI CTCAG 2 cut(s) 109, 1429
BspFNI CGCG 1 cut(s) 570
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 21, 214, 945
BspMI ACCTGC 1 cut(s) 1112
BspPI GGATC 2 cut(s) 14, 27
BspQI GCTCTTC 1 cut(s) 857
BspTNI GGTCTC 1 cut(s) 1252
BsrBI CCGCTC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 1059
BsrGI TGTACA 1 cut(s) 1399
BsrI ACTGG 3 cut(s) 594, 887, 924
BssMI GATC 2 cut(s) 19, 94
BssNI GRCGYC 1 cut(s) 921
Bst2UI CCWGG 1 cut(s) 1424
Bst4CI ACNGT 9 cut(s) 31, 289, 310, 487, 582, 758, 917, 1272, 1300
Bst6I CTCTTC 1 cut(s) 857
BstACI GRCGYC 1 cut(s) 921
BstAPI GCANNNNNTGC 2 cut(s) 638, 1118
BstAUI TGTACA 1 cut(s) 1399
BstC8I GCNNGC 4 cut(s) 465, 469, 869, 1119
BstDEI CTNAG 6 cut(s) 15, 103, 117, 407, 551, 1437
BstF5I GGATG 2 cut(s) 133, 632
BstFNI CGCG 1 cut(s) 570
BstKTI GATC 2 cut(s) 22, 97
BstMAI GTCTC 4 cut(s) 138, 1252, 1271, 1433
BstMBI GATC 2 cut(s) 19, 94
BstMWI GCNNNNNNNGC 7 cut(s) 267, 390, 417, 567, 638, 1049, 1118
BstNI CCWGG 1 cut(s) 1424
BstNSI RCATGY 2 cut(s) 613, 1121
BstSCI CCNGG 1 cut(s) 1422
BstSFI CTRYAG 4 cut(s) 309, 453, 483, 1322
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 5 cut(s) 97, 472, 679, 803, 1121
BstV2I GAAGAC 2 cut(s) 391, 725
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 5 cut(s) 351, 467, 495, 667, 1175
BtsCI GGATG 2 cut(s) 133, 632
BtsIMutI CAGTG 3 cut(s) 922, 931, 1084
BveI ACCTGC 1 cut(s) 1112
Cac8I GCNNGC 4 cut(s) 465, 469, 869, 1119
CaiI CAGNNNCTG 1 cut(s) 1127
CciI TCATGA 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 350, 479
CseI GACGC 2 cut(s) 929, 1032
Csp6I GTAC 3 cut(s) 620, 759, 1400
CviQI GTAC 3 cut(s) 620, 759, 1400
DdeI CTNAG 6 cut(s) 15, 103, 117, 407, 551, 1437
DpnI GATC 2 cut(s) 21, 96
DpnII GATC 2 cut(s) 19, 94
EaeI YGGCCR 1 cut(s) 1173
Eam1104I CTCTTC 1 cut(s) 857
EarI CTCTTC 1 cut(s) 857
EciI GGCGGA 1 cut(s) 449
Ecl136II GAGCTC 1 cut(s) 70
Eco147I AGGCCT 1 cut(s) 495
Eco24I GRGCYC 2 cut(s) 72, 596
Eco31I GGTCTC 1 cut(s) 1252
Eco32I GATATC 1 cut(s) 1197
Eco47I GGWCC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 30, 881
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 1209
EcoRII CCWGG 1 cut(s) 1422
EcoRV GATATC 1 cut(s) 1197
EcoT38I GRGCYC 2 cut(s) 72, 596
FalI AAGNNNNNCTT 2 cut(s) 1137, 1169
FaqI GGGAC 1 cut(s) 869
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 5 cut(s) 111, 461, 693, 817, 1110
FokI GGATG 2 cut(s) 140, 639
FriOI GRGCYC 2 cut(s) 72, 596
Fsp4HI GCNGC 5 cut(s) 111, 461, 693, 817, 1110
FspBI CTAG 6 cut(s) 156, 201, 246, 381, 794, 813
GluI GCNGC 5 cut(s) 111, 461, 693, 817, 1110
GsaI CCCAGC 1 cut(s) 397
HaeIII GGCC 5 cut(s) 351, 467, 495, 667, 1175
HgaI GACGC 2 cut(s) 929, 1032
Hin1I GRCGYC 1 cut(s) 921
HincII GTYRAC 1 cut(s) 1188
HindII GTYRAC 1 cut(s) 1188
HindIII AAGCTT 3 cut(s) 169, 409, 1151
HinfI GANTC 6 cut(s) 131, 145, 565, 874, 910, 965
Hpy166II GTNNAC 4 cut(s) 647, 700, 810, 1188
Hpy188I TCNGA 3 cut(s) 305, 790, 1015
Hpy188III TCNNGA 9 cut(s) 116, 142, 165, 210, 255, 277, 324, 705, 947
Hpy8I GTNNAC 4 cut(s) 647, 700, 810, 1188
Hpy99I CGWCG 1 cut(s) 1070
HpyAV CCTTC 2 cut(s) 413, 506
HpyCH4III ACNGT 9 cut(s) 31, 289, 310, 487, 582, 758, 917, 1272, 1300
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 8 cut(s) 632, 775, 819, 995, 1052, 1109, 1121, 1418
HpyF10VI GCNNNNNNNGC 7 cut(s) 267, 390, 417, 567, 638, 1049, 1118
HpyF3I CTNAG 6 cut(s) 15, 103, 117, 407, 551, 1437
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 921
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 19, 94
LguI GCTCTTC 1 cut(s) 857
LmnI GCTCC 4 cut(s) 67, 118, 436, 1095
Lsp1109I GCAGC 5 cut(s) 97, 472, 679, 803, 1121
LweI GCATC 2 cut(s) 309, 429
MaeI CTAG 6 cut(s) 156, 201, 246, 381, 794, 813
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 376, 917
MalI GATC 2 cut(s) 21, 96
MbiI CCGCTC 1 cut(s) 439
MboI GATC 2 cut(s) 19, 94
MboII GAAGA 4 cut(s) 292, 391, 725, 874
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 72, 596
MlsI TGGCCA 1 cut(s) 1175
MluCI AATT 4 cut(s) 527, 972, 1209, 1261
MluNI TGGCCA 1 cut(s) 1175
MlyI GAGTC 3 cut(s) 139, 140, 883
MmeI TCCRAC 2 cut(s) 469, 1291
Mox20I TGGCCA 1 cut(s) 1175
MscI TGGCCA 1 cut(s) 1175
MseI TTAA 3 cut(s) 294, 330, 1026
MslI CAYNNNNRTG 1 cut(s) 1122
Msp20I TGGCCA 1 cut(s) 1175
MspA1I CMGCKG 4 cut(s) 463, 859, 871, 1283
MspR9I CCNGG 1 cut(s) 1424
Mva1269I GAATGC 2 cut(s) 632, 1111
MvaI CCWGG 1 cut(s) 1424
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 7 cut(s) 267, 390, 417, 567, 638, 1049, 1118
NdeII GATC 2 cut(s) 19, 94
NlaIV GGNNCC 3 cut(s) 21, 214, 945
NmuCI GTSAC 2 cut(s) 376, 917
NspI RCATGY 2 cut(s) 613, 1121
PaeI GCATGC 1 cut(s) 1121
PagI TCATGA 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 1112
PceI AGGCCT 1 cut(s) 495
PciI ACATGT 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 857
PctI GAATGC 2 cut(s) 632, 1111
PfeI GAWTC 3 cut(s) 565, 910, 965
PflMI CCANNNNNTGG 2 cut(s) 975, 1100
PfoI TCCNGGA 1 cut(s) 1422
PkrI GCNGC 5 cut(s) 112, 462, 694, 818, 1111
PleI GAGTC 3 cut(s) 139, 139, 882
PpsI GAGTC 3 cut(s) 139, 139, 882
PpuMI RGGWCCY 1 cut(s) 479
PscI ACATGT 1 cut(s) 609
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 1422
PspFI CCCAGC 1 cut(s) 393
PspGI CCWGG 1 cut(s) 1422
PspN4I GGNNCC 3 cut(s) 21, 214, 945
PspPI GGNCC 2 cut(s) 350, 479
PspPPI RGGWCCY 1 cut(s) 479
PstNI CAGNNNCTG 1 cut(s) 1127
PsuI RGATCY 1 cut(s) 19
PvuII CAGCTG 3 cut(s) 463, 859, 1283
RsaI GTAC 3 cut(s) 621, 760, 1401
RsaNI GTAC 3 cut(s) 620, 759, 1400
RseI CAYNNNNRTG 1 cut(s) 1122
SacI GAGCTC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 857
SaqAI TTAA 3 cut(s) 294, 330, 1026
SatI GCNGC 5 cut(s) 111, 461, 693, 817, 1110
Sau3AI GATC 2 cut(s) 19, 94
Sau96I GGNCC 2 cut(s) 350, 479
ScaI AGTACT 1 cut(s) 760
SchI GAGTC 3 cut(s) 139, 140, 883
ScrFI CCNGG 1 cut(s) 1424
SduI GDGCHC 2 cut(s) 72, 596
SfaNI GCATC 2 cut(s) 309, 429
SfcI CTRYAG 4 cut(s) 309, 453, 483, 1322
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 1122
SmlI CTYRAG 3 cut(s) 71, 140, 322
SmoI CTYRAG 3 cut(s) 71, 140, 322
SpeI ACTAGT 1 cut(s) 245
SphI GCATGC 1 cut(s) 1121
Sse9I AATT 4 cut(s) 527, 972, 1209, 1261
SseBI AGGCCT 1 cut(s) 495
SsiI CCGC 3 cut(s) 434, 439, 871
SspI AATATT 2 cut(s) 1019, 1060
SspMI CTAG 6 cut(s) 156, 201, 246, 381, 794, 813
SstI GAGCTC 1 cut(s) 72
StuI AGGCCT 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 1422
TaaI ACNGT 9 cut(s) 31, 289, 310, 487, 582, 758, 917, 1272, 1300
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 62, 77
TasI AATT 4 cut(s) 527, 972, 1209, 1261
TatI WGTACW 3 cut(s) 619, 758, 1399
TfiI GAWTC 3 cut(s) 565, 910, 965
Tru1I TTAA 3 cut(s) 294, 330, 1026
Tru9I TTAA 3 cut(s) 294, 330, 1026
TscAI CASTG 3 cut(s) 922, 931, 1084
TseFI GTSAC 2 cut(s) 376, 917
TseI GCWGC 5 cut(s) 110, 460, 692, 816, 1109
Tsp45I GTSAC 2 cut(s) 376, 917
TspDTI ATGAA 5 cut(s) 293, 1070, 1157, 1282, 1306
TspRI CASTG 3 cut(s) 922, 931, 1084
Van91I CCANNNNNTGG 2 cut(s) 975, 1100
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 2 cut(s) 1209, 1261
XceI RCATGY 2 cut(s) 613, 1121
XspI CTAG 6 cut(s) 156, 201, 246, 381, 794, 813
ZrmI AGTACT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.