Vacuolar cation proton exchanger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55730 AT1G55730 AT3G13320 |
| fragaria_vesca | FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200 |
| malus_domestica | MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1 |
| prunus_persica | Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 |
| pyrus_communis | pycom03g03100 pycom11g03540 |
| rosa_chinensis | RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081 |
| rosa_laevigata | RLG00000020827 RLG00000036528 |
| rosa_multiflora | Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00006540 Rroxscaffold_2G00093860 |
| rosa_rugosa | Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100 |
| rosa_samantha | Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700 |
| rosa_wichuraiana | Rw2G042100 Rw5G045760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1112 |
| Acc36I | ACCTGC | 1 cut(s) | 1112 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 975, 1100 |
| AccBSI | CCGCTC | 1 cut(s) | 439 |
| AccII | CGCG | 1 cut(s) | 570 |
| AciI | CCGC | 3 cut(s) | 434, 439, 871 |
| AclWI | GGATC | 2 cut(s) | 14, 27 |
| AcoI | YGGCCR | 1 cut(s) | 1173 |
| AcsI | RAATTY | 2 cut(s) | 1209, 1261 |
| AcuI | CTGAAG | 2 cut(s) | 30, 881 |
| AcyI | GRCGYC | 1 cut(s) | 921 |
| AfaI | GTAC | 3 cut(s) | 621, 760, 1401 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 488, 804, 975, 1100 |
| AflIII | ACRYGT | 1 cut(s) | 609 |
| AgsI | TTSAA | 5 cut(s) | 578, 679, 804, 1261, 1348 |
| AhlI | ACTAGT | 1 cut(s) | 245 |
| AjnI | CCWGG | 1 cut(s) | 1422 |
| Alw21I | GWGCWC | 1 cut(s) | 72 |
| Alw26I | GTCTC | 4 cut(s) | 138, 1252, 1271, 1433 |
| AlwI | GGATC | 2 cut(s) | 14, 27 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1127 |
| AoxI | GGCC | 5 cut(s) | 349, 465, 493, 665, 1173 |
| ApeKI | GCWGC | 5 cut(s) | 110, 460, 692, 816, 1109 |
| ApoI | RAATTY | 2 cut(s) | 1209, 1261 |
| AspS9I | GGNCC | 2 cut(s) | 350, 479 |
| AvaII | GGWCC | 1 cut(s) | 479 |
| BalI | TGGCCA | 1 cut(s) | 1175 |
| BamHI | GGATCC | 1 cut(s) | 19 |
| BanII | GRGCYC | 2 cut(s) | 72, 596 |
| BbsI | GAAGAC | 2 cut(s) | 391, 725 |
| Bbv12I | GWGCWC | 1 cut(s) | 72 |
| BbvI | GCAGC | 5 cut(s) | 97, 472, 679, 803, 1121 |
| BccI | CCATC | 5 cut(s) | 49, 58, 393, 712, 1219 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 822, 856 |
| BciT130I | CCWGG | 1 cut(s) | 1424 |
| BciVI | GTATCC | 1 cut(s) | 80 |
| BclI | TGATCA | 1 cut(s) | 94 |
| BcoDI | GTCTC | 4 cut(s) | 138, 1252, 1271, 1433 |
| BcuI | ACTAGT | 1 cut(s) | 245 |
| BfaI | CTAG | 6 cut(s) | 156, 201, 246, 381, 794, 813 |
| BfmI | CTRYAG | 4 cut(s) | 309, 453, 483, 1322 |
| BfuAI | ACCTGC | 1 cut(s) | 1112 |
| BfuI | GTATCC | 1 cut(s) | 80 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 390 |
| BisI | GCNGC | 5 cut(s) | 111, 461, 693, 817, 1110 |
| BlsI | GCNGC | 5 cut(s) | 112, 462, 694, 818, 1111 |
| BmcAI | AGTACT | 1 cut(s) | 760 |
| Bme1390I | CCNGG | 1 cut(s) | 1424 |
| Bme18I | GGWCC | 1 cut(s) | 479 |
| BmgT120I | GGNCC | 2 cut(s) | 350, 479 |
| BmiI | GGNNCC | 3 cut(s) | 21, 214, 945 |
| BmrFI | CCNGG | 1 cut(s) | 1424 |
| BmrI | ACTGGG | 2 cut(s) | 599, 881 |
| BmsI | GCATC | 2 cut(s) | 309, 429 |
| BmuI | ACTGGG | 2 cut(s) | 599, 881 |
| BpiI | GAAGAC | 2 cut(s) | 391, 725 |
| Bpu10I | CCTNAGC | 1 cut(s) | 15 |
| BpuEI | CTTGAG | 3 cut(s) | 56, 125, 307 |
| BsaHI | GRCGYC | 1 cut(s) | 921 |
| BsaI | GGTCTC | 1 cut(s) | 1252 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 59, 89 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 488, 804, 975, 1100 |
| Bse1I | ACTGG | 3 cut(s) | 594, 887, 924 |
| Bse3DI | GCAATG | 1 cut(s) | 1059 |
| BseBI | CCWGG | 1 cut(s) | 1424 |
| BseGI | GGATG | 2 cut(s) | 133, 632 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 488, 804, 975, 1100 |
| BseMI | GCAATG | 1 cut(s) | 1059 |
| BseMII | CTCAG | 2 cut(s) | 108, 1428 |
| BseNI | ACTGG | 3 cut(s) | 594, 887, 924 |
| BseRI | GAGGAG | 2 cut(s) | 310, 920 |
| BseXI | GCAGC | 5 cut(s) | 97, 472, 679, 803, 1121 |
| BseYI | CCCAGC | 1 cut(s) | 393 |
| Bsh1236I | CGCG | 1 cut(s) | 570 |
| BshFI | GGCC | 5 cut(s) | 351, 467, 495, 667, 1175 |
| BsiHKAI | GWGCWC | 1 cut(s) | 72 |
| BslFI | GGGAC | 1 cut(s) | 869 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 488, 804, 975, 1100 |
| BsmAI | GTCTC | 4 cut(s) | 138, 1252, 1271, 1433 |
| BsmFI | GGGAC | 1 cut(s) | 869 |
| BsmI | GAATGC | 2 cut(s) | 632, 1111 |
| BsnI | GGCC | 5 cut(s) | 351, 467, 495, 667, 1175 |
| Bso31I | GGTCTC | 1 cut(s) | 1252 |
| Bsp1286I | GDGCHC | 2 cut(s) | 72, 596 |
| Bsp1407I | TGTACA | 1 cut(s) | 1399 |
| Bsp143I | GATC | 2 cut(s) | 19, 94 |
| BspACI | CCGC | 3 cut(s) | 434, 439, 871 |
| BspANI | GGCC | 5 cut(s) | 351, 467, 495, 667, 1175 |
| BspCNI | CTCAG | 2 cut(s) | 109, 1429 |
| BspFNI | CGCG | 1 cut(s) | 570 |
| BspHI | TCATGA | 1 cut(s) | 276 |
| BspLI | GGNNCC | 3 cut(s) | 21, 214, 945 |
| BspMI | ACCTGC | 1 cut(s) | 1112 |
| BspPI | GGATC | 2 cut(s) | 14, 27 |
| BspQI | GCTCTTC | 1 cut(s) | 857 |
| BspTNI | GGTCTC | 1 cut(s) | 1252 |
| BsrBI | CCGCTC | 1 cut(s) | 439 |
| BsrDI | GCAATG | 1 cut(s) | 1059 |
| BsrGI | TGTACA | 1 cut(s) | 1399 |
| BsrI | ACTGG | 3 cut(s) | 594, 887, 924 |
| BssMI | GATC | 2 cut(s) | 19, 94 |
| BssNI | GRCGYC | 1 cut(s) | 921 |
| Bst2UI | CCWGG | 1 cut(s) | 1424 |
| Bst4CI | ACNGT | 9 cut(s) | 31, 289, 310, 487, 582, 758, 917, 1272, 1300 |
| Bst6I | CTCTTC | 1 cut(s) | 857 |
| BstACI | GRCGYC | 1 cut(s) | 921 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 638, 1118 |
| BstAUI | TGTACA | 1 cut(s) | 1399 |
| BstC8I | GCNNGC | 4 cut(s) | 465, 469, 869, 1119 |
| BstDEI | CTNAG | 6 cut(s) | 15, 103, 117, 407, 551, 1437 |
| BstF5I | GGATG | 2 cut(s) | 133, 632 |
| BstFNI | CGCG | 1 cut(s) | 570 |
| BstKTI | GATC | 2 cut(s) | 22, 97 |
| BstMAI | GTCTC | 4 cut(s) | 138, 1252, 1271, 1433 |
| BstMBI | GATC | 2 cut(s) | 19, 94 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 267, 390, 417, 567, 638, 1049, 1118 |
| BstNI | CCWGG | 1 cut(s) | 1424 |
| BstNSI | RCATGY | 2 cut(s) | 613, 1121 |
| BstSCI | CCNGG | 1 cut(s) | 1422 |
| BstSFI | CTRYAG | 4 cut(s) | 309, 453, 483, 1322 |
| BstUI | CGCG | 1 cut(s) | 570 |
| BstV1I | GCAGC | 5 cut(s) | 97, 472, 679, 803, 1121 |
| BstV2I | GAAGAC | 2 cut(s) | 391, 725 |
| BstX2I | RGATCY | 1 cut(s) | 19 |
| BstYI | RGATCY | 1 cut(s) | 19 |
| BsuI | GTATCC | 1 cut(s) | 80 |
| BsuRI | GGCC | 5 cut(s) | 351, 467, 495, 667, 1175 |
| BtsCI | GGATG | 2 cut(s) | 133, 632 |
| BtsIMutI | CAGTG | 3 cut(s) | 922, 931, 1084 |
| BveI | ACCTGC | 1 cut(s) | 1112 |
| Cac8I | GCNNGC | 4 cut(s) | 465, 469, 869, 1119 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1127 |
| CciI | TCATGA | 1 cut(s) | 276 |
| Cfr13I | GGNCC | 2 cut(s) | 350, 479 |
| CseI | GACGC | 2 cut(s) | 929, 1032 |
| Csp6I | GTAC | 3 cut(s) | 620, 759, 1400 |
| CviQI | GTAC | 3 cut(s) | 620, 759, 1400 |
| DdeI | CTNAG | 6 cut(s) | 15, 103, 117, 407, 551, 1437 |
| DpnI | GATC | 2 cut(s) | 21, 96 |
| DpnII | GATC | 2 cut(s) | 19, 94 |
| EaeI | YGGCCR | 1 cut(s) | 1173 |
| Eam1104I | CTCTTC | 1 cut(s) | 857 |
| EarI | CTCTTC | 1 cut(s) | 857 |
| EciI | GGCGGA | 1 cut(s) | 449 |
| Ecl136II | GAGCTC | 1 cut(s) | 70 |
| Eco147I | AGGCCT | 1 cut(s) | 495 |
| Eco24I | GRGCYC | 2 cut(s) | 72, 596 |
| Eco31I | GGTCTC | 1 cut(s) | 1252 |
| Eco32I | GATATC | 1 cut(s) | 1197 |
| Eco47I | GGWCC | 1 cut(s) | 479 |
| Eco53kI | GAGCTC | 1 cut(s) | 70 |
| Eco57I | CTGAAG | 2 cut(s) | 30, 881 |
| EcoICRI | GAGCTC | 1 cut(s) | 70 |
| EcoO109I | RGGNCCY | 1 cut(s) | 479 |
| EcoRI | GAATTC | 1 cut(s) | 1209 |
| EcoRII | CCWGG | 1 cut(s) | 1422 |
| EcoRV | GATATC | 1 cut(s) | 1197 |
| EcoT38I | GRGCYC | 2 cut(s) | 72, 596 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1137, 1169 |
| FaqI | GGGAC | 1 cut(s) | 869 |
| FbaI | TGATCA | 1 cut(s) | 94 |
| Fnu4HI | GCNGC | 5 cut(s) | 111, 461, 693, 817, 1110 |
| FokI | GGATG | 2 cut(s) | 140, 639 |
| FriOI | GRGCYC | 2 cut(s) | 72, 596 |
| Fsp4HI | GCNGC | 5 cut(s) | 111, 461, 693, 817, 1110 |
| FspBI | CTAG | 6 cut(s) | 156, 201, 246, 381, 794, 813 |
| GluI | GCNGC | 5 cut(s) | 111, 461, 693, 817, 1110 |
| GsaI | CCCAGC | 1 cut(s) | 397 |
| HaeIII | GGCC | 5 cut(s) | 351, 467, 495, 667, 1175 |
| HgaI | GACGC | 2 cut(s) | 929, 1032 |
| Hin1I | GRCGYC | 1 cut(s) | 921 |
| HincII | GTYRAC | 1 cut(s) | 1188 |
| HindII | GTYRAC | 1 cut(s) | 1188 |
| HindIII | AAGCTT | 3 cut(s) | 169, 409, 1151 |
| HinfI | GANTC | 6 cut(s) | 131, 145, 565, 874, 910, 965 |
| Hpy166II | GTNNAC | 4 cut(s) | 647, 700, 810, 1188 |
| Hpy188I | TCNGA | 3 cut(s) | 305, 790, 1015 |
| Hpy188III | TCNNGA | 9 cut(s) | 116, 142, 165, 210, 255, 277, 324, 705, 947 |
| Hpy8I | GTNNAC | 4 cut(s) | 647, 700, 810, 1188 |
| Hpy99I | CGWCG | 1 cut(s) | 1070 |
| HpyAV | CCTTC | 2 cut(s) | 413, 506 |
| HpyCH4III | ACNGT | 9 cut(s) | 31, 289, 310, 487, 582, 758, 917, 1272, 1300 |
| HpyCH4IV | ACGT | 1 cut(s) | 48 |
| HpyCH4V | TGCA | 8 cut(s) | 632, 775, 819, 995, 1052, 1109, 1121, 1418 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 267, 390, 417, 567, 638, 1049, 1118 |
| HpyF3I | CTNAG | 6 cut(s) | 15, 103, 117, 407, 551, 1437 |
| HpySE526I | ACGT | 1 cut(s) | 48 |
| Hsp92I | GRCGYC | 1 cut(s) | 921 |
| Ksp22I | TGATCA | 1 cut(s) | 94 |
| Kzo9I | GATC | 2 cut(s) | 19, 94 |
| LguI | GCTCTTC | 1 cut(s) | 857 |
| LmnI | GCTCC | 4 cut(s) | 67, 118, 436, 1095 |
| Lsp1109I | GCAGC | 5 cut(s) | 97, 472, 679, 803, 1121 |
| LweI | GCATC | 2 cut(s) | 309, 429 |
| MaeI | CTAG | 6 cut(s) | 156, 201, 246, 381, 794, 813 |
| MaeII | ACGT | 1 cut(s) | 48 |
| MaeIII | GTNAC | 2 cut(s) | 376, 917 |
| MalI | GATC | 2 cut(s) | 21, 96 |
| MbiI | CCGCTC | 1 cut(s) | 439 |
| MboI | GATC | 2 cut(s) | 19, 94 |
| MboII | GAAGA | 4 cut(s) | 292, 391, 725, 874 |
| MflI | RGATCY | 1 cut(s) | 19 |
| MhlI | GDGCHC | 2 cut(s) | 72, 596 |
| MlsI | TGGCCA | 1 cut(s) | 1175 |
| MluCI | AATT | 4 cut(s) | 527, 972, 1209, 1261 |
| MluNI | TGGCCA | 1 cut(s) | 1175 |
| MlyI | GAGTC | 3 cut(s) | 139, 140, 883 |
| MmeI | TCCRAC | 2 cut(s) | 469, 1291 |
| Mox20I | TGGCCA | 1 cut(s) | 1175 |
| MscI | TGGCCA | 1 cut(s) | 1175 |
| MseI | TTAA | 3 cut(s) | 294, 330, 1026 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1122 |
| Msp20I | TGGCCA | 1 cut(s) | 1175 |
| MspA1I | CMGCKG | 4 cut(s) | 463, 859, 871, 1283 |
| MspR9I | CCNGG | 1 cut(s) | 1424 |
| Mva1269I | GAATGC | 2 cut(s) | 632, 1111 |
| MvaI | CCWGG | 1 cut(s) | 1424 |
| MvnI | CGCG | 1 cut(s) | 570 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 267, 390, 417, 567, 638, 1049, 1118 |
| NdeII | GATC | 2 cut(s) | 19, 94 |
| NlaIV | GGNNCC | 3 cut(s) | 21, 214, 945 |
| NmuCI | GTSAC | 2 cut(s) | 376, 917 |
| NspI | RCATGY | 2 cut(s) | 613, 1121 |
| PaeI | GCATGC | 1 cut(s) | 1121 |
| PagI | TCATGA | 1 cut(s) | 276 |
| PaqCI | CACCTGC | 1 cut(s) | 1112 |
| PceI | AGGCCT | 1 cut(s) | 495 |
| PciI | ACATGT | 1 cut(s) | 609 |
| PciSI | GCTCTTC | 1 cut(s) | 857 |
| PctI | GAATGC | 2 cut(s) | 632, 1111 |
| PfeI | GAWTC | 3 cut(s) | 565, 910, 965 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 975, 1100 |
| PfoI | TCCNGGA | 1 cut(s) | 1422 |
| PkrI | GCNGC | 5 cut(s) | 112, 462, 694, 818, 1111 |
| PleI | GAGTC | 3 cut(s) | 139, 139, 882 |
| PpsI | GAGTC | 3 cut(s) | 139, 139, 882 |
| PpuMI | RGGWCCY | 1 cut(s) | 479 |
| PscI | ACATGT | 1 cut(s) | 609 |
| Psp124BI | GAGCTC | 1 cut(s) | 72 |
| Psp5II | RGGWCCY | 1 cut(s) | 479 |
| Psp6I | CCWGG | 1 cut(s) | 1422 |
| PspFI | CCCAGC | 1 cut(s) | 393 |
| PspGI | CCWGG | 1 cut(s) | 1422 |
| PspN4I | GGNNCC | 3 cut(s) | 21, 214, 945 |
| PspPI | GGNCC | 2 cut(s) | 350, 479 |
| PspPPI | RGGWCCY | 1 cut(s) | 479 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1127 |
| PsuI | RGATCY | 1 cut(s) | 19 |
| PvuII | CAGCTG | 3 cut(s) | 463, 859, 1283 |
| RsaI | GTAC | 3 cut(s) | 621, 760, 1401 |
| RsaNI | GTAC | 3 cut(s) | 620, 759, 1400 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1122 |
| SacI | GAGCTC | 1 cut(s) | 72 |
| SapI | GCTCTTC | 1 cut(s) | 857 |
| SaqAI | TTAA | 3 cut(s) | 294, 330, 1026 |
| SatI | GCNGC | 5 cut(s) | 111, 461, 693, 817, 1110 |
| Sau3AI | GATC | 2 cut(s) | 19, 94 |
| Sau96I | GGNCC | 2 cut(s) | 350, 479 |
| ScaI | AGTACT | 1 cut(s) | 760 |
| SchI | GAGTC | 3 cut(s) | 139, 140, 883 |
| ScrFI | CCNGG | 1 cut(s) | 1424 |
| SduI | GDGCHC | 2 cut(s) | 72, 596 |
| SfaNI | GCATC | 2 cut(s) | 309, 429 |
| SfcI | CTRYAG | 4 cut(s) | 309, 453, 483, 1322 |
| SinI | GGWCC | 1 cut(s) | 479 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1122 |
| SmlI | CTYRAG | 3 cut(s) | 71, 140, 322 |
| SmoI | CTYRAG | 3 cut(s) | 71, 140, 322 |
| SpeI | ACTAGT | 1 cut(s) | 245 |
| SphI | GCATGC | 1 cut(s) | 1121 |
| Sse9I | AATT | 4 cut(s) | 527, 972, 1209, 1261 |
| SseBI | AGGCCT | 1 cut(s) | 495 |
| SsiI | CCGC | 3 cut(s) | 434, 439, 871 |
| SspI | AATATT | 2 cut(s) | 1019, 1060 |
| SspMI | CTAG | 6 cut(s) | 156, 201, 246, 381, 794, 813 |
| SstI | GAGCTC | 1 cut(s) | 72 |
| StuI | AGGCCT | 1 cut(s) | 495 |
| StyD4I | CCNGG | 1 cut(s) | 1422 |
| TaaI | ACNGT | 9 cut(s) | 31, 289, 310, 487, 582, 758, 917, 1272, 1300 |
| TaiI | ACGT | 1 cut(s) | 51 |
| TaqI | TCGA | 2 cut(s) | 62, 77 |
| TasI | AATT | 4 cut(s) | 527, 972, 1209, 1261 |
| TatI | WGTACW | 3 cut(s) | 619, 758, 1399 |
| TfiI | GAWTC | 3 cut(s) | 565, 910, 965 |
| Tru1I | TTAA | 3 cut(s) | 294, 330, 1026 |
| Tru9I | TTAA | 3 cut(s) | 294, 330, 1026 |
| TscAI | CASTG | 3 cut(s) | 922, 931, 1084 |
| TseFI | GTSAC | 2 cut(s) | 376, 917 |
| TseI | GCWGC | 5 cut(s) | 110, 460, 692, 816, 1109 |
| Tsp45I | GTSAC | 2 cut(s) | 376, 917 |
| TspDTI | ATGAA | 5 cut(s) | 293, 1070, 1157, 1282, 1306 |
| TspRI | CASTG | 3 cut(s) | 922, 931, 1084 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 975, 1100 |
| VpaK11BI | GGWCC | 1 cut(s) | 479 |
| XapI | RAATTY | 2 cut(s) | 1209, 1261 |
| XceI | RCATGY | 2 cut(s) | 613, 1121 |
| XspI | CTAG | 6 cut(s) | 156, 201, 246, 381, 794, 813 |
| ZrmI | AGTACT | 1 cut(s) | 760 |