Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002198

Physical Location & Seq

Genomic Coordinates Reverse (-)

60520025 .. 60520513

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0436100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTGAAACACTCCTGTTTCCATCTCTGTTTGCTTCAACAAGGGAAGAGCAACACCTACCCTGTGCACTCAACCAAGCTGAACACAGAGGTCTTGATCTAGGGCTAGGGCTAAGTCTGGGCTCCATTGACTACGACCCGTGGATCATCAAGAAGAAGTTGACGGTCAGCGACCTCGGAGAATTGAGCAGGCTTTTGGTGCCCAAGAGTTTAACCCAGAAACATGTTTTGCGATTCATGAACAAGAGCTTGAACGAAAGGGTCCACAGTAGCAATGGGGAACTTGTCACCGTTTACGACTGTGACATGAAATCGAAGCATGAGTTGGTCTTCAAATACTGGCCGTCGTCAAAGAGTTACGTTTTGCAAGCAAACTGGAAGAAGGAGTTTGTGAATGTGAGGAAATTGAAGGAAGGTGATCAAATTGGGCTTTACTGGGATGCCCGGCGTTCCATTTTCGTATTTTCTCTTCTTAAACGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051139 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

162

Amino Acids

18.7

Weight (kDa)

9.21

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	52 - 159	5.7e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55730 AT1G55730 AT3G13320
fragaria_vesca	FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200
malus_domestica	MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1
prunus_persica	Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1
pyrus_communis	pycom03g03100 pycom11g03540
rosa_chinensis	RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081
rosa_laevigata	RLG00000020827 RLG00000036528
rosa_multiflora	Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006540 Rroxscaffold_2G00093860
rosa_rugosa	Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100
rosa_samantha	Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700
rosa_wichuraiana	Rw2G042100 Rw5G045760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	39, 253, 334, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	80, 249
AluI	AGCT	2 cut(s)	80, 249
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	341
ApaLI	GTGCAC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	2 cut(s)	280, 428
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	2 cut(s)	70, 204
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	453, 485
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	328
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	445
BfaI	CTAG	2 cut(s)	101, 107
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	3 cut(s)	124, 201, 263
BmrFI	CCNGG	1 cut(s)	445
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	140, 175
Bse1I	ACTGG	3 cut(s)	344, 380, 440
Bse3DI	GCAATG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	140, 175
BseGI	GGATG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	280
BseNI	ACTGG	3 cut(s)	344, 380, 440
BseSI	GKGCMC	2 cut(s)	70, 204
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	445
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	3 cut(s)	70, 125, 204
Bsp143I	GATC	3 cut(s)	97, 144, 418
BspANI	GGCC	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	124, 201, 263
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	3 cut(s)	344, 380, 440
BssECI	CCNNGG	2 cut(s)	140, 175
BssMI	GATC	3 cut(s)	97, 144, 418
Bst4CI	ACNGT	4 cut(s)	166, 269, 292, 302
Bst6I	CTCTTC	2 cut(s)	42, 474
BstC8I	GCNNGC	2 cut(s)	191, 369
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	3 cut(s)	100, 147, 421
BstMBI	GATC	3 cut(s)	97, 144, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	443
BstSLI	GKGCMC	2 cut(s)	70, 204
BstV2I	GAAGAC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	191, 369
CciI	TCATGA	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	4 cut(s)	224, 238, 307, 320
CviJI	RGCY	9 cut(s)	5, 80, 106, 112, 123, 193, 249, 343, 430
CviKI_1	RGCY	9 cut(s)	5, 80, 106, 112, 123, 193, 249, 343, 430
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	3 cut(s)	99, 146, 420
DpnII	GATC	3 cut(s)	97, 144, 418
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	42, 474
EarI	CTCTTC	2 cut(s)	42, 474
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	4 cut(s)	227, 241, 310, 323
FaiI	YATR	4 cut(s)	225, 239, 308, 321
FatI	CATG	4 cut(s)	223, 237, 306, 319
FbaI	TGATCA	1 cut(s)	418
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	125
FspBI	CTAG	2 cut(s)	101, 107
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	445
Hin1II	CATG	4 cut(s)	227, 241, 310, 323
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	2 cut(s)	280, 428
Hpy166II	GTNNAC	4 cut(s)	68, 162, 265, 295
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	3 cut(s)	95, 151, 238
Hpy8I	GTNNAC	4 cut(s)	68, 162, 265, 295
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	3 cut(s)	376, 403, 407
HpyCH4III	ACNGT	4 cut(s)	166, 269, 292, 302
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	2 cut(s)	68, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	227, 241, 310, 323
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	97, 144, 418
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	9 cut(s)	29, 76, 104, 175, 230, 325, 361, 421, 458
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	101, 107
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	286, 302, 356
MalI	GATC	3 cut(s)	99, 146, 420
MboI	GATC	3 cut(s)	97, 144, 418
MboII	GAAGA	5 cut(s)	59, 166, 322, 391, 461
MhlI	GDGCHC	3 cut(s)	70, 125, 204
MluCI	AATT	3 cut(s)	182, 404, 423
MnlI	CCTC	3 cut(s)	83, 185, 393
MseI	TTAA	2 cut(s)	212, 474
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	445
MwoI	GCNNNNNNNGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	3 cut(s)	97, 144, 418
NlaIII	CATG	4 cut(s)	227, 241, 310, 323
NlaIV	GGNNCC	3 cut(s)	124, 201, 263
NmuCI	GTSAC	2 cut(s)	286, 302
NspI	RCATGY	1 cut(s)	227
PagI	TCATGA	1 cut(s)	237
PciI	ACATGT	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	234
PscI	ACATGT	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	124, 201, 263
PspPI	GGNCC	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	212, 474
Sau3AI	GATC	3 cut(s)	97, 144, 418
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	3 cut(s)	70, 125, 204
SetI	ASST	7 cut(s)	60, 82, 94, 177, 251, 363, 418
SfaNI	GCATC	1 cut(s)	430
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	3 cut(s)	182, 404, 423
SspMI	CTAG	2 cut(s)	101, 107
StyD4I	CCNGG	1 cut(s)	443
TaaI	ACNGT	4 cut(s)	166, 269, 292, 302
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	182, 404, 423
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	212, 474
Tru9I	TTAA	2 cut(s)	212, 474
TseFI	GTSAC	2 cut(s)	286, 302
Tsp45I	GTSAC	2 cut(s)	286, 302
TspDTI	ATGAA	3 cut(s)	226, 254, 323
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	262
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XspI	CTAG	2 cut(s)	101, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.