Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002198

Physical Location & Seq

Genomic Coordinates Forward (+)

2453229 .. 2457008

Gene Structure 3780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03100.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGAATTATAAGCCTGGAATCCAGTCTCAACTTGAAATGGAATCACTGGGTAACGGACCAATACATGAGTTTGAGGATGAGAGTCTTTTTACTCCAAAGACAGAGGCTCAAAAGATATGTTCTATTGAAGCAGTGGGAGAATGTTCGTTTTCAGGAGGTTCACAAGCTAGCGGTGATAAAGTGTGGAGGAATATTGTTTATAGAAGCATAAAGACTGTTGTTTTCTCAACTAAACTCAACTTGCTTATGCCTTTTGGGCCGCTAGCGATACTTGTCTCTAAGCTAACTGGCCATAATGGTTGGGTCTTTGTTTTGAGCTTGTTGGGTATAACACCTTTAGCTGAGCGTTTGGGTTATGCTACCGAGCAGCTGGCATTCTATACTGGAGCTACTGTTGGGGGTCTTTTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCAATTTATGCACTGAAACGTGGAATGTTACGCGTTGTTCAGCAGTCGTTATTAGGCTCTATTCTGTCAAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCAGTGGTGGACTTGTTTTTCAAGAGAAAGAACAGGTGTTTAACAAGGCAACTGCTGTTGTGAACTCTGGCTTGCTGCTAATGGCAGTCATGGGCCTACTTTTTCCAGCTGTCTTGCACTACACTCACACTGAGGTTCATTTTGGGAAGTCAGAGTTGGCACTTTCAAGATTTAGCAGCTGTGTCATGCTCCTGACATATGCTGCTTTTCTTTTCTTCCAGTTAAAGAGTCGGCATAATCAATATGTGCCTTTAAATGAGGAAGGGATTCAAAATGAAGAGAACGCAGATGACGAAGTTCCTGAGATCTCCAAATGGGAATCAATAGTTTGGCTATCAGTAATGACTGCTTGGATCTCAATCGTATCCGAATATTTAGTTAATGCGATAGAGGGAGCATCTATAGCATGGAACATGCCAATTTCATTTATCAGCGTTATTTTGCTCCCAATTGTGGGTAATGCTGCAGAGCATGCCAGTGCTATTATGTTTGCCATGAAGGACAAGCTTGACATTTCTTTGGGAGTGGCAATAGGGTCGTCAACGCAGATATCCATGTTTGGGATTCCTTTCTGTGTGGTTGTTGGGTGGATTATGGGGCGCCCTATGGACTTGAACTTTCAGCTTTTTGAGACGGCAACACTTTTCATAACTGTCTTAGTTGTAGCCTTCTTGCTGCAGGAGGGAACTTCTAATTACTTCAAAGGGTTGATGCTTATTCTTTGTTATCTGATAGTTGCTGCAAGTTTCTTTGTTCACGTAGATCCTTCCCCTCCAGCAGGGGAAACGCAAGTAAAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051139 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

449

Amino Acids

48.97

Weight (kDa)

5.25

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55730 AT1G55730 AT3G13320
fragaria_vesca	FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_3g41890 FvH4_6g40200 FvH4_6g40200 FvH4_6g40200
malus_domestica	MD03G1040300.v1.1 MD09G1134300.v1.1 MD11G1041700.v1.1 MD17G1123100.v1.1
prunus_persica	Prupe.3G192400_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1 Prupe.6G032600_v2.0.a1
pyrus_communis	pycom03g03100 pycom11g03540
rosa_chinensis	RchiOBHm_Chr2g0155221 RchiOBHm_Chr5g0075081
rosa_laevigata	RLG00000020827 RLG00000036528
rosa_multiflora	Rmu_sc0006984.1_g000024 Rmu_sc0012066.1_g000002 Rmu_sc0028924.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006540 Rroxscaffold_2G00093860
rosa_rugosa	Rorug02G0446100 Rorug02G0446100 Rorug05G0436000 Rorug05G0436100
rosa_samantha	Rh2AG512500 Rh2CG497500 Rh5AG493500 Rh5CG538700
rosa_wichuraiana	Rw2G042100 Rw5G045760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	1143
AccII	CGCG	1 cut(s)	477
AciI	CCGC	2 cut(s)	171, 260
AclWI	GGATC	2 cut(s)	905, 1301
AcoI	YGGCCR	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	529
AcyI	GRCGYC	1 cut(s)	1144
AfiI	CCNNNNNNNGG	4 cut(s)	997, 998, 1104, 1322
AflIII	ACRYGT	2 cut(s)	475, 516
AgsI	TTSAA	7 cut(s)	35, 128, 566, 711, 815, 1159, 1246
AjnI	CCWGG	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
Alw26I	GTCTC	3 cut(s)	30, 280, 1169
AlwI	GGATC	2 cut(s)	905, 1301
AoxI	GGCC	3 cut(s)	257, 289, 637
ApeKI	GCWGC	7 cut(s)	367, 619, 720, 746, 1007, 1219, 1283
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	1 cut(s)	1146
AspS9I	GGNCC	3 cut(s)	56, 257, 637
AsuHPI	GGTGA	1 cut(s)	185
AsuNHI	GCTAGC	2 cut(s)	167, 262
AvaII	GGWCC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	1143
BbvI	GCAGC	7 cut(s)	379, 606, 732, 733, 994, 1206, 1270
BceAI	ACGGC	1 cut(s)	1194
BcgI	CGANNNNNNTGC	2 cut(s)	1062, 1096
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	919
BcoDI	GTCTC	3 cut(s)	30, 280, 1169
BfaI	CTAG	2 cut(s)	168, 263
BfmI	CTRYAG	3 cut(s)	945, 1008, 1220
BfoI	RGCGCY	1 cut(s)	1147
BfuI	GTATCC	1 cut(s)	919
BglI	GCCNNNNNGGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	849
BisI	GCNGC	8 cut(s)	260, 368, 620, 721, 747, 1008, 1220, 1284
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	8 cut(s)	261, 369, 621, 722, 748, 1009, 1221, 1285
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	3 cut(s)	56, 257, 637
BmiI	GGNNCC	1 cut(s)	1145
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	950, 1245
BmtI	GCTAGC	2 cut(s)	171, 266
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	2 cut(s)	405, 1302
Bpu1102I	GCTNAGC	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	1303
BsaBI	GATNNNNATC	1 cut(s)	902
BsaHI	GRCGYC	1 cut(s)	1144
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	4 cut(s)	997, 998, 1104, 1322
Bse1I	ACTGG	6 cut(s)	22, 51, 292, 388, 763, 1020
Bse8I	GATNNNNATC	1 cut(s)	902
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	902
BseLI	CCNNNNNNNGG	4 cut(s)	997, 998, 1104, 1322
BseMII	CTCAG	3 cut(s)	333, 666, 837
BseNI	ACTGG	6 cut(s)	22, 51, 292, 388, 763, 1020
BseXI	GCAGC	7 cut(s)	379, 606, 732, 733, 994, 1206, 1270
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	259, 291, 639
BshNI	GGYRCC	1 cut(s)	1143
BslI	CCNNNNNNNGG	4 cut(s)	997, 998, 1104, 1322
BsmAI	GTCTC	3 cut(s)	30, 280, 1169
BsmBI	CGTCTC	1 cut(s)	1169
BsmI	GAATGC	2 cut(s)	374, 539
BsnI	GGCC	3 cut(s)	259, 291, 639
Bsp143I	GATC	3 cut(s)	849, 897, 1306
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	2 cut(s)	171, 260
BspANI	GGCC	3 cut(s)	259, 291, 639
BspCNI	CTCAG	3 cut(s)	334, 667, 838
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	1145
BspMAI	CTGCAG	2 cut(s)	1012, 1224
BspOI	GCTAGC	2 cut(s)	171, 266
BspPI	GGATC	2 cut(s)	905, 1301
BspT107I	GGYRCC	1 cut(s)	1143
BsrI	ACTGG	6 cut(s)	22, 51, 292, 388, 763, 1020
BssMI	GATC	3 cut(s)	849, 897, 1306
BssNI	GRCGYC	1 cut(s)	1144
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	3 cut(s)	217, 394, 1198
Bst6I	CTCTTC	1 cut(s)	816
BstACI	GRCGYC	1 cut(s)	1144
BstAPI	GCANNNNNTGC	1 cut(s)	1016
BstBAI	YACGTR	1 cut(s)	1303
BstC8I	GCNNGC	5 cut(s)	169, 264, 372, 617, 1017
BstDEI	CTNAG	5 cut(s)	279, 342, 675, 846, 1201
BstENI	CCTNNNNNAGG	1 cut(s)	1320
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	477
BstH2I	RGCGCY	1 cut(s)	1147
BstHHI	GCGC	1 cut(s)	1146
BstKTI	GATC	3 cut(s)	852, 900, 1309
BstMAI	GTCTC	3 cut(s)	30, 280, 1169
BstMBI	GATC	3 cut(s)	849, 897, 1306
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 947, 1016
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	3 cut(s)	520, 961, 1019
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	3 cut(s)	945, 1008, 1220
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	7 cut(s)	379, 606, 732, 733, 994, 1206, 1270
BstX2I	RGATCY	3 cut(s)	849, 897, 1306
BstYI	RGATCY	3 cut(s)	849, 897, 1306
BsuI	GTATCC	1 cut(s)	919
BsuRI	GGCC	3 cut(s)	259, 291, 639
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	6 cut(s)	44, 138, 455, 553, 672, 1027
Cac8I	GCNNGC	5 cut(s)	169, 264, 372, 617, 1017
CfoI	GCGC	1 cut(s)	1146
Cfr13I	GGNCC	3 cut(s)	56, 257, 637
CviAII	CATG	9 cut(s)	65, 517, 634, 730, 951, 958, 1016, 1039, 1099
DdeI	CTNAG	5 cut(s)	279, 342, 675, 846, 1201
DinI	GGCGCC	1 cut(s)	1145
DpnI	GATC	3 cut(s)	851, 899, 1308
DpnII	GATC	3 cut(s)	849, 897, 1306
DraI	TTTAAA	2 cut(s)	408, 798
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	1095
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	529
EcoNI	CCTNNNNNAGG	1 cut(s)	1320
EcoRII	CCWGG	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	1095
EgeI	GGCGCC	1 cut(s)	1145
EheI	GGCGCC	1 cut(s)	1145
Esp3I	CGTCTC	1 cut(s)	1169
FaeI	CATG	9 cut(s)	68, 520, 637, 733, 954, 961, 1019, 1042, 1102
FatI	CATG	9 cut(s)	64, 516, 633, 729, 950, 957, 1015, 1038, 1098
FauNDI	CATATG	1 cut(s)	742
Fnu4HI	GCNGC	8 cut(s)	260, 368, 620, 721, 747, 1008, 1220, 1284
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	8 cut(s)	260, 368, 620, 721, 747, 1008, 1220, 1284
FspBI	CTAG	2 cut(s)	168, 263
GlaI	GCGC	1 cut(s)	1145
GluI	GCNGC	8 cut(s)	260, 368, 620, 721, 747, 1008, 1220, 1284
GsuI	CTGGAG	2 cut(s)	405, 1302
HaeII	RGCGCY	1 cut(s)	1147
HaeIII	GGCC	3 cut(s)	259, 291, 639
HhaI	GCGC	1 cut(s)	1146
Hin1I	GRCGYC	1 cut(s)	1144
Hin1II	CATG	9 cut(s)	68, 520, 637, 733, 954, 961, 1019, 1042, 1102
Hin6I	GCGC	1 cut(s)	1144
HinP1I	GCGC	1 cut(s)	1144
HincII	GTYRAC	1 cut(s)	1086
HindII	GTYRAC	1 cut(s)	1086
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	7 cut(s)	18, 41, 82, 772, 811, 863, 1108
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	5 cut(s)	161, 554, 607, 1086, 1300
Hpy188I	TCNGA	3 cut(s)	697, 913, 1275
Hpy188III	TCNNGA	5 cut(s)	153, 566, 711, 736, 845
Hpy8I	GTNNAC	5 cut(s)	161, 554, 607, 1086, 1300
HpyAV	CCTTC	4 cut(s)	800, 1036, 1222, 1320
HpyCH4III	ACNGT	3 cut(s)	217, 394, 1198
HpyCH4IV	ACGT	3 cut(s)	463, 1302, 1343
HpyCH4V	TGCA	7 cut(s)	428, 455, 539, 661, 1010, 1222, 1286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 947, 1016
HpyF3I	CTNAG	5 cut(s)	279, 342, 675, 846, 1201
HpySE526I	ACGT	3 cut(s)	463, 1302, 1343
Hsp92I	GRCGYC	1 cut(s)	1144
Hsp92II	CATG	9 cut(s)	68, 520, 637, 733, 954, 961, 1019, 1042, 1102
HspAI	GCGC	1 cut(s)	1144
KasI	GGCGCC	1 cut(s)	1143
Kzo9I	GATC	3 cut(s)	849, 897, 1306
LmnI	GCTCC	4 cut(s)	386, 738, 938, 993
Lsp1109I	GCAGC	7 cut(s)	379, 606, 732, 733, 994, 1206, 1270
LweI	GCATC	2 cut(s)	950, 1245
MaeI	CTAG	2 cut(s)	168, 263
MaeII	ACGT	3 cut(s)	463, 1302, 1343
MaeIII	GTNAC	2 cut(s)	50, 471
MalI	GATC	3 cut(s)	851, 899, 1308
MboI	GATC	3 cut(s)	849, 897, 1306
MboII	GAAGA	3 cut(s)	535, 751, 833
MfeI	CAATTG	1 cut(s)	993
MflI	RGATCY	3 cut(s)	849, 897, 1306
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	5 cut(s)	4, 447, 963, 993, 1237
MluI	ACGCGT	1 cut(s)	475
MluNI	TGGCCA	1 cut(s)	291
Mly113I	GGCGCC	1 cut(s)	1144
MlyI	GAGTC	2 cut(s)	91, 781
MnlI	CCTC	9 cut(s)	67, 97, 149, 180, 670, 796, 928, 1219, 1326
Mox20I	TGGCCA	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	810
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	5 cut(s)	407, 585, 767, 797, 924
MslI	CAYNNNNRTG	1 cut(s)	1020
Msp20I	TGGCCA	1 cut(s)	291
MspA1I	CMGCKG	3 cut(s)	370, 653, 723
MspR9I	CCNGG	1 cut(s)	15
MunI	CAATTG	1 cut(s)	993
Mva1269I	GAATGC	2 cut(s)	374, 539
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	256, 947, 1016
NarI	GGCGCC	1 cut(s)	1144
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	3 cut(s)	849, 897, 1306
NheI	GCTAGC	2 cut(s)	167, 262
NlaIII	CATG	9 cut(s)	68, 520, 637, 733, 954, 961, 1019, 1042, 1102
NlaIV	GGNNCC	1 cut(s)	1145
NspI	RCATGY	3 cut(s)	520, 961, 1019
PaeI	GCATGC	1 cut(s)	1019
PciI	ACATGT	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	834
PctI	GAATGC	2 cut(s)	374, 539
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	5 cut(s)	18, 41, 811, 863, 1108
PkrI	GCNGC	8 cut(s)	261, 369, 621, 722, 748, 1009, 1221, 1285
PleI	GAGTC	2 cut(s)	90, 780
PluTI	GGCGCC	1 cut(s)	1147
PpsI	GAGTC	2 cut(s)	90, 780
Ppu21I	YACGTR	1 cut(s)	1303
PscI	ACATGT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	1145
PspPI	GGNCC	3 cut(s)	56, 257, 637
PstI	CTGCAG	2 cut(s)	1012, 1224
PsuI	RGATCY	3 cut(s)	849, 897, 1306
PvuII	CAGCTG	3 cut(s)	370, 653, 723
RseI	CAYNNNNRTG	1 cut(s)	1020
SaqAI	TTAA	5 cut(s)	407, 585, 767, 797, 924
SatI	GCNGC	8 cut(s)	260, 368, 620, 721, 747, 1008, 1220, 1284
Sau3AI	GATC	3 cut(s)	849, 897, 1306
Sau96I	GGNCC	3 cut(s)	56, 257, 637
SchI	GAGTC	2 cut(s)	91, 781
ScrFI	CCNGG	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	950, 1245
SfcI	CTRYAG	3 cut(s)	945, 1008, 1220
SfoI	GGCGCC	1 cut(s)	1145
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SphI	GCATGC	1 cut(s)	1019
Sse9I	AATT	5 cut(s)	4, 447, 963, 993, 1237
SsiI	CCGC	2 cut(s)	171, 260
SspDI	GGCGCC	1 cut(s)	1143
SspI	AATATT	2 cut(s)	193, 917
SspMI	CTAG	2 cut(s)	168, 263
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	3 cut(s)	217, 394, 1198
TaiI	ACGT	3 cut(s)	466, 1305, 1346
TasI	AATT	5 cut(s)	4, 447, 963, 993, 1237
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	5 cut(s)	18, 41, 811, 863, 1108
Tru1I	TTAA	5 cut(s)	407, 585, 767, 797, 924
Tru9I	TTAA	5 cut(s)	407, 585, 767, 797, 924
TscAI	CASTG	6 cut(s)	51, 138, 462, 553, 679, 1027
TseI	GCWGC	7 cut(s)	367, 619, 720, 746, 1007, 1219, 1283
TspDTI	ATGAA	6 cut(s)	17, 671, 834, 957, 1055, 1180
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	6 cut(s)	51, 138, 462, 553, 679, 1027
VpaK11BI	GGWCC	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	1320
XceI	RCATGY	3 cut(s)	520, 961, 1019
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	2 cut(s)	168, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.