AT1G56320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009038
Physical Location & Seq
Reverse (-)
21085548 .. 21086499
952 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56320.1

Sequence Viewer

Length: 492 bp
ATGAATGTTCCAAAGGTGTCAAGACTTTGGCTACTCTATGCAGTGTTGCTCTTTGATAGTCAGAGACATTCAGTAAATGCGCAGGCTGGTGGTATCATCGGGGGCGCGGGGATTTTGGTTCAGAGAGCCGCGTTCTGTTTTAACAATAATCTGCTCTACAGAGGATGTAATGAGGCGTTCAGACTAAACCAACAAGGTGAATTCAAGGTTCCACCTGAGGAAACAGACAGATTCTGCAACGGTCCTTGTTCTGCAGAAACAGAACTTGTGCTTACATGCATTAATAGTGTCATGTCTGATTTCGTGTTTTACAATCGTGCTACCCCGAGAGATGTAAGGAACGCCCTCCGTGGTGGCTGCAGCTCCTCTTTCACACGAGGAAACTTCAATGTGGGAGACTATGCTCAAGGACTCTATTTCGGCAAGGCAGGGAAAAAGCTGCCTGGACTGTTCATTGTACTAGTTCTCGGGTTTGTACCACTGATCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.92

Weight (kDa)

9.02

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 39 - 134 1.6e-37 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 81
AccII CGCG 2 cut(s) 107, 131
AciI CCGC 2 cut(s) 107, 129
AclWI GGATC 1 cut(s) 478
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 2 cut(s) 459, 477
AgsI TTSAA 2 cut(s) 205, 388
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 2 cut(s) 363, 439
AluI AGCT 2 cut(s) 363, 439
Alw26I GTCTC 2 cut(s) 58, 390
AlwI GGATC 1 cut(s) 478
AlwNI CAGNNNCTG 1 cut(s) 234
Ama87I CYCGRG 2 cut(s) 325, 467
ApeKI GCWGC 3 cut(s) 357, 360, 439
ApoI RAATTY 1 cut(s) 200
AseI ATTAAT 1 cut(s) 282
AspLEI GCGC 2 cut(s) 82, 107
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 2 cut(s) 325, 467
AvaII GGWCC 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 216
BauI CACGAG 1 cut(s) 375
BbvI GCAGC 3 cut(s) 344, 372, 426
BciT130I CCWGG 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 58, 390
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 3 cut(s) 157, 252, 358
BisI GCNGC 4 cut(s) 129, 358, 361, 440
BlsI GCNGC 4 cut(s) 130, 359, 362, 441
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 2 cut(s) 325, 467
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 355
BseXI GCAGC 3 cut(s) 344, 372, 426
Bsh1236I CGCG 2 cut(s) 107, 131
BsiHKCI CYCGRG 2 cut(s) 325, 467
BsmAI GTCTC 2 cut(s) 58, 390
BsoBI CYCGRG 2 cut(s) 325, 467
Bsp143I GATC 1 cut(s) 483
BspACI CCGC 2 cut(s) 107, 129
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 2 cut(s) 107, 131
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 2 cut(s) 256, 362
BspPI GGATC 1 cut(s) 478
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 1 cut(s) 483
BssSI CACGAG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 242, 450
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 2 cut(s) 107, 131
BstHHI GCGC 2 cut(s) 82, 107
BstKTI GATC 1 cut(s) 486
BstMAI GTCTC 2 cut(s) 58, 390
BstMBI GATC 1 cut(s) 483
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 3 cut(s) 157, 252, 358
BstUI CGCG 2 cut(s) 107, 131
BstV1I GCAGC 3 cut(s) 344, 372, 426
Bsu36I CCTNAGG 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 48, 479
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 234
CfoI GCGC 2 cut(s) 82, 107
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 458, 476
CviAII CATG 2 cut(s) 276, 292
CviJI RGCY 6 cut(s) 31, 86, 128, 357, 363, 439
CviKI_1 RGCY 6 cut(s) 31, 86, 128, 357, 363, 439
CviQI GTAC 2 cut(s) 458, 476
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 242
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 2 cut(s) 325, 467
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 281
FaeI CATG 2 cut(s) 279, 295
FaiI YATR 4 cut(s) 39, 277, 293, 402
FatI CATG 2 cut(s) 275, 291
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 129, 358, 361, 440
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 4 cut(s) 129, 358, 361, 440
FspBI CTAG 1 cut(s) 461
FspI TGCGCA 1 cut(s) 81
GlaI GCGC 2 cut(s) 81, 106
GluI GCNGC 4 cut(s) 129, 358, 361, 440
HhaI GCGC 2 cut(s) 82, 107
Hin1II CATG 2 cut(s) 279, 295
Hin6I GCGC 2 cut(s) 80, 105
HinP1I GCGC 2 cut(s) 80, 105
HinfI GANTC 2 cut(s) 231, 411
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 4 cut(s) 63, 123, 182, 298
Hpy188III TCNNGA 1 cut(s) 21
HpyCH4III ACNGT 2 cut(s) 242, 450
HpyCH4V TGCA 5 cut(s) 41, 237, 254, 279, 360
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 2 cut(s) 279, 295
HspAI GCGC 2 cut(s) 80, 105
Kzo9I GATC 1 cut(s) 483
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 6 cut(s) 68, 72, 228, 414, 429, 456
Lsp1109I GCAGC 3 cut(s) 344, 372, 426
MaeI CTAG 1 cut(s) 461
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 405
MnlI CCTC 6 cut(s) 155, 166, 211, 356, 371, 376
Mph1103I ATGCAT 1 cut(s) 281
MseI TTAA 2 cut(s) 141, 282
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 2 cut(s) 107, 131
NdeII GATC 1 cut(s) 483
NlaIII CATG 2 cut(s) 279, 295
NlaIV GGNNCC 1 cut(s) 210
NsbI TGCGCA 1 cut(s) 81
NsiI ATGCAT 1 cut(s) 281
NspI RCATGY 1 cut(s) 279
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 4 cut(s) 130, 359, 362, 441
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PshBI ATTAAT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 2 cut(s) 256, 362
PstNI CAGNNNCTG 1 cut(s) 234
RsaI GTAC 2 cut(s) 459, 477
RsaNI GTAC 2 cut(s) 458, 476
SaqAI TTAA 2 cut(s) 141, 282
SatI GCNGC 4 cut(s) 129, 358, 361, 440
Sau3AI GATC 1 cut(s) 483
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 444
SetI ASST 6 cut(s) 18, 199, 210, 217, 365, 441
SfcI CTRYAG 3 cut(s) 157, 252, 358
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 1 cut(s) 200
SsiI CCGC 2 cut(s) 107, 129
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 2 cut(s) 242, 450
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 457
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 2 cut(s) 141, 282
Tru9I TTAA 2 cut(s) 141, 282
TscAI CASTG 2 cut(s) 48, 486
TseI GCWGC 3 cut(s) 357, 360, 439
TspDTI ATGAA 2 cut(s) 17, 442
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 2 cut(s) 48, 486
VpaK11BI GGWCC 1 cut(s) 242
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 279
XspI CTAG 1 cut(s) 461
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.