Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009038

Physical Location & Seq

Genomic Coordinates Reverse (-)

6197446 .. 6201524

Gene Structure 4079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGACTTTTTTTAATCTCCCTCCAAAACACAAGTTCCTTGGTTTCACTCTTGTTCTCATTGTAGTATTTTGCTGCTTCTCAGGCTATTCAGCAGACAACCCAGGGGAAAGATTTTTCAACGCCTTAACGTGCTTCAGCAATAAGTTTATCTATTCTGGTTGTGATAAAGCATATAGATTGAACGAAAGCGGAAACCTTAATGTGCCTCCTAATGCACTTGATCTGTTCTGCCATGGACCCTGTCTGGCTGAGACACAGCAAGTGCTGAAGTGCGTTGATAGCATGTTATCGACCTTCATTTTCAATAATAAGGCTACACTACCAGATATAAGAGGTGCCCTCCATGACGGCTGCAGCTATACCAGCCAAAGAGATGATAATAAGCTTCCCACATCTTCTAAGAAGGGTTGGAAGCACTTGAGACGTATATTCAAATCCTTCAAGAACAGTGATGACTACTACAACCATTATTATCAATACCATGTTCACTATGATGACTACAAGAAGCAGCAGCGCCGCGGCAGCGGGGCAACCAAATCATCAACAGTTGAAGCACCAATGGTGCATCACCAGGCTGTTGCTGCACGAGCTCTTACCAGTTCCAGAGAAAGAGCTCATGTTCATCGTCGTAGCAAAAATGAACCTCGGGATCGAAATGCCTTGGGAGATAATGTCGAAAATGGGGAGGGTGTTGATGCTGATTGTGAGAAGTTCATAGAGTGGTTCCGCGACGGGTGGAAGCTTGAGAGACAAATTTCTGCTGAAGAGTTTCGGGACATGCTGGATAGAAGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

30.48

Weight (kDa)

8.65

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7731	PF24865	37 - 126	4.9e-35	Domain of unknown function (DUF7731)
DUF761	PF05553	229 - 263	2.1e-07	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56320
fragaria_vesca	FvH4_6g07260 FvH4_6g07260
malus_domestica	MD04G1195000.v1.1
prunus_persica	Prupe.6G314800_v2.0.a1
pyrus_communis	pycom04g17230
rosa_chinensis	RchiOBHm_Chr3g0456891
rosa_laevigata	RLG00000025270 RLG00000025271
rosa_multiflora	Rmu_sc0000133.1_g000015 Rmu_sc0000133.1_g000016
rosa_roxburghii	Rroxscaffold_6G00422400 Rroxscaffold_6G00422410
rosa_rugosa	Rorug03G0016600 Rorug03G0016700 Rorug03G0016800
rosa_samantha	Rh3AG077000 Rh3BG078800 Rh3CG078600 Rh3CG078700 Rh3DG080600
rosa_wichuraiana	Rw3G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccII	CGCG	2 cut(s)	519, 729
AciI	CCGC	5 cut(s)	189, 517, 519, 525, 727
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	3 cut(s)	118, 287, 783
AgsI	TTSAA	6 cut(s)	118, 181, 304, 433, 442, 551
AjnI	CCWGG	2 cut(s)	100, 570
AluBI	AGCT	5 cut(s)	357, 385, 590, 614, 742
AluI	AGCT	5 cut(s)	357, 385, 590, 614, 742
Alw21I	GWGCWC	2 cut(s)	592, 616
Alw26I	GTCTC	3 cut(s)	245, 415, 742
AlwI	GGATC	1 cut(s)	657
Ama87I	CYCGRG	1 cut(s)	645
ApeKI	GCWGC	7 cut(s)	72, 351, 354, 508, 511, 522, 581
ApoI	RAATTY	1 cut(s)	753
Asp700I	GAANNNNTTC	1 cut(s)	768
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	645
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	592, 616
BauI	CACGAG	1 cut(s)	585
Bbv12I	GWGCWC	2 cut(s)	592, 616
BbvI	GCAGC	7 cut(s)	59, 338, 366, 520, 523, 534, 568
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	2 cut(s)	102, 572
BcoDI	GTCTC	3 cut(s)	245, 415, 742
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	517
BisI	GCNGC	9 cut(s)	73, 352, 355, 509, 512, 517, 520, 523, 582
BlsI	GCNGC	9 cut(s)	74, 353, 356, 510, 513, 518, 521, 524, 583
Bme1390I	CCNGG	2 cut(s)	102, 572
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	645
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	3 cut(s)	238, 337, 725
BmrFI	CCNGG	2 cut(s)	102, 572
BmsI	GCATC	2 cut(s)	574, 685
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpuEI	CTTGAG	2 cut(s)	439, 764
BsaJI	CCNNGG	7 cut(s)	37, 100, 101, 232, 517, 644, 660
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bse1I	ACTGG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	102, 572
BseDI	CCNNGG	7 cut(s)	37, 100, 101, 232, 517, 644, 660
BseMII	CTCAG	2 cut(s)	93, 240
BseNI	ACTGG	1 cut(s)	597
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	7 cut(s)	59, 338, 366, 520, 523, 534, 568
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	2 cut(s)	519, 729
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	2 cut(s)	592, 616
BsiHKCI	CYCGRG	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	788
BsmAI	GTCTC	3 cut(s)	245, 415, 742
BsmBI	CGTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	788
BsoBI	CYCGRG	1 cut(s)	645
Bsp1286I	GDGCHC	3 cut(s)	340, 592, 616
Bsp143I	GATC	2 cut(s)	220, 649
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	5 cut(s)	189, 517, 519, 525, 727
BspCNI	CTCAG	2 cut(s)	92, 241
BspFNI	CGCG	2 cut(s)	519, 729
BspLI	GGNNCC	3 cut(s)	238, 337, 725
BspMAI	CTGCAG	1 cut(s)	356
BspPI	GGATC	1 cut(s)	657
BspT107I	GGYRCC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	597
BssECI	CCNNGG	7 cut(s)	37, 100, 101, 232, 517, 644, 660
BssMI	GATC	2 cut(s)	220, 649
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	3 cut(s)	37, 232, 660
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	2 cut(s)	102, 572
Bst4CI	ACNGT	2 cut(s)	449, 547
Bst6I	CTCTTC	1 cut(s)	759
BstDEI	CTNAG	4 cut(s)	79, 249, 399, 795
BstDSI	CCRYGG	2 cut(s)	232, 517
BstFNI	CGCG	2 cut(s)	519, 729
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	2 cut(s)	223, 652
BstMAI	GTCTC	3 cut(s)	245, 415, 742
BstMBI	GATC	2 cut(s)	220, 649
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 279, 363, 522, 581, 587
BstNI	CCWGG	2 cut(s)	102, 572
BstNSI	RCATGY	2 cut(s)	286, 781
BstSCI	CCNGG	2 cut(s)	100, 570
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	2 cut(s)	519, 729
BstV1I	GCAGC	7 cut(s)	59, 338, 366, 520, 523, 534, 568
BtgI	CCRYGG	2 cut(s)	232, 517
BtsIMutI	CAGTG	1 cut(s)	454
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	236
Cfr42I	CCGCGG	1 cut(s)	520
CviAII	CATG	6 cut(s)	233, 283, 344, 482, 617, 778
DdeI	CTNAG	4 cut(s)	79, 249, 399, 795
DpnI	GATC	2 cut(s)	222, 651
DpnII	GATC	2 cut(s)	220, 649
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Ecl136II	GAGCTC	2 cut(s)	590, 614
Eco130I	CCWWGG	3 cut(s)	37, 232, 660
Eco24I	GRGCYC	2 cut(s)	592, 616
Eco47I	GGWCC	1 cut(s)	236
Eco53kI	GAGCTC	2 cut(s)	590, 614
Eco57I	CTGAAG	3 cut(s)	118, 287, 783
Eco88I	CYCGRG	1 cut(s)	645
EcoICRI	GAGCTC	2 cut(s)	590, 614
EcoRII	CCWGG	2 cut(s)	100, 570
EcoT14I	CCWWGG	3 cut(s)	37, 232, 660
EcoT38I	GRGCYC	2 cut(s)	592, 616
ErhI	CCWWGG	3 cut(s)	37, 232, 660
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	6 cut(s)	236, 286, 347, 485, 620, 781
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	6 cut(s)	232, 282, 343, 481, 616, 777
FauI	CCCGC	1 cut(s)	518
Fnu4HI	GCNGC	9 cut(s)	73, 352, 355, 509, 512, 517, 520, 523, 582
FriOI	GRGCYC	2 cut(s)	592, 616
Fsp4HI	GCNGC	9 cut(s)	73, 352, 355, 509, 512, 517, 520, 523, 582
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	9 cut(s)	73, 352, 355, 509, 512, 517, 520, 523, 582
HaeII	RGCGCY	1 cut(s)	517
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	6 cut(s)	236, 286, 347, 485, 620, 781
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HindIII	AAGCTT	2 cut(s)	383, 740
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188III	TCNNGA	4 cut(s)	442, 603, 647, 773
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	2 cut(s)	630, 734
HpyAV	CCTTC	3 cut(s)	304, 397, 448
HpyCH4III	ACNGT	2 cut(s)	449, 547
HpyCH4IV	ACGT	2 cut(s)	128, 424
HpyCH4V	TGCA	4 cut(s)	215, 354, 565, 584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 279, 363, 522, 581, 587
HpyF3I	CTNAG	4 cut(s)	79, 249, 399, 795
HpySE526I	ACGT	2 cut(s)	128, 424
Hsp92II	CATG	6 cut(s)	236, 286, 347, 485, 620, 781
HspAI	GCGC	1 cut(s)	514
KspI	CCGCGG	1 cut(s)	520
Kzo9I	GATC	2 cut(s)	220, 649
Lsp1109I	GCAGC	7 cut(s)	59, 338, 366, 520, 523, 534, 568
LweI	GCATC	2 cut(s)	574, 685
MaeII	ACGT	2 cut(s)	128, 424
MalI	GATC	2 cut(s)	222, 651
MboI	GATC	2 cut(s)	220, 649
MboII	GAAGA	2 cut(s)	387, 776
MhlI	GDGCHC	3 cut(s)	340, 592, 616
MluCI	AATT	1 cut(s)	753
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	6 cut(s)	30, 216, 326, 350, 654, 679
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	3 cut(s)	12, 125, 198
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	2 cut(s)	519, 525
MspR9I	CCNGG	2 cut(s)	102, 572
MvaI	CCWGG	2 cut(s)	102, 572
MvnI	CGCG	2 cut(s)	519, 729
MwoI	GCNNNNNNNGC	6 cut(s)	81, 279, 363, 522, 581, 587
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	2 cut(s)	220, 649
NlaIII	CATG	6 cut(s)	236, 286, 347, 485, 620, 781
NlaIV	GGNNCC	3 cut(s)	238, 337, 725
NspI	RCATGY	2 cut(s)	286, 781
PasI	CCCWGGG	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	768
PflFI	GACNNNGTC	1 cut(s)	240
PkrI	GCNGC	9 cut(s)	74, 353, 356, 510, 513, 518, 521, 524, 583
Psp124BI	GAGCTC	2 cut(s)	592, 616
Psp6I	CCWGG	2 cut(s)	100, 570
PspGI	CCWGG	2 cut(s)	100, 570
PspN4I	GGNNCC	3 cut(s)	238, 337, 725
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	356
PsyI	GACNNNGTC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	492
SacI	GAGCTC	2 cut(s)	592, 616
SacII	CCGCGG	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	12, 125, 198
SatI	GCNGC	9 cut(s)	73, 352, 355, 509, 512, 517, 520, 523, 582
Sau3AI	GATC	2 cut(s)	220, 649
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	102, 572
SduI	GDGCHC	3 cut(s)	340, 592, 616
SfaNI	GCATC	2 cut(s)	574, 685
SfcI	CTRYAG	1 cut(s)	352
Sfr303I	CCGCGG	1 cut(s)	520
SgrBI	CCGCGG	1 cut(s)	520
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	418, 743
SmoI	CTYRAG	2 cut(s)	418, 743
Sse9I	AATT	1 cut(s)	753
SsiI	CCGC	5 cut(s)	189, 517, 519, 525, 727
SstI	GAGCTC	2 cut(s)	592, 616
StyD4I	CCNGG	2 cut(s)	100, 570
StyI	CCWWGG	3 cut(s)	37, 232, 660
TaaI	ACNGT	2 cut(s)	449, 547
TaiI	ACGT	2 cut(s)	131, 427
TaqI	TCGA	3 cut(s)	290, 652, 675
TasI	AATT	1 cut(s)	753
TauI	GCSGC	2 cut(s)	519, 522
Tru1I	TTAA	3 cut(s)	12, 125, 198
Tru9I	TTAA	3 cut(s)	12, 125, 198
TscAI	CASTG	1 cut(s)	454
TseI	GCWGC	7 cut(s)	72, 351, 354, 508, 511, 522, 581
TspDTI	ATGAA	4 cut(s)	286, 611, 654, 703
TspRI	CASTG	1 cut(s)	454
Tth111I	GACNNNGTC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	753
XceI	RCATGY	2 cut(s)	286, 781
XmnI	GAANNNNTTC	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.