RchiOBHm_Chr3g0456891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009038
Physical Location & Seq
Reverse (-)
6226147 .. 6227061
915 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42366

Sequence Viewer

Length: 510 bp
ATGACTTTTTTTAATCTCCCTCCAAAACACAAGTTCCTTGGTTTCACTCTTGTTCTCATTGTAGTATTTTGCTGCTTCTCAGGCTATTCAGCAGACAACCCAGGGGAAAGATTTTTCAACGCCTTAACGTGCTTCAGCAATAAGTTTATCTATTCTGGTTGTGATAAAGCATATAGATTGAACGAAAGCGGAAACCTTAATGTGCCTCCTAATGCACTTGATCTGTTCTGCCATGGACCCTGTCTGGCTGAGACACAGCAAGTGCTGAAGTGCGTTGATAGCATGTTATCGACCTTCATTTTCAATAATAAGGCTACACTACCAGATATAAGAGGTGCCCTCCATGACGGCTGCAGCTATACCAGCCAAAGAGGGAACTTCAATGGTTTTGGACCTTTCGGTGAGTATATACAAGGTGAAAATGCTGCAGGGAAGCTACCAAATTTAGTTAGCTTCCTCTTCACAATCTTATGTATTACAGGCTGTTGTCTCTTCTTCATCTTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.75

Weight (kDa)

6.78

Isoelectric Point (pI)

21.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 37 - 128 2.4e-37 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AciI CCGC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 2 cut(s) 118, 287
AgsI TTSAA 4 cut(s) 118, 181, 304, 382
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 3 cut(s) 357, 436, 453
AluI AGCT 3 cut(s) 357, 436, 453
Alw26I GTCTC 2 cut(s) 245, 494
ApeKI GCWGC 4 cut(s) 72, 351, 354, 425
ApoI RAATTY 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 236, 392
AsuHPI GGTGA 2 cut(s) 413, 428
AvaII GGWCC 2 cut(s) 236, 392
BaeGI GKGCMC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 335
BbvI GCAGC 4 cut(s) 59, 338, 366, 412
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 2 cut(s) 245, 494
BfmI CTRYAG 2 cut(s) 352, 426
BisI GCNGC 4 cut(s) 73, 352, 355, 426
BlsI GCNGC 4 cut(s) 74, 353, 356, 427
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 2 cut(s) 236, 392
BmgT120I GGNCC 2 cut(s) 236, 392
BmiI GGNNCC 2 cut(s) 238, 337
BmrFI CCNGG 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 324, 356
BsaJI CCNNGG 4 cut(s) 37, 100, 101, 232
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 4 cut(s) 37, 100, 101, 232
BseMII CTCAG 2 cut(s) 93, 240
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 4 cut(s) 59, 338, 366, 412
BshNI GGYRCC 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 245, 494
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 1 cut(s) 220
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 92, 241
BspLI GGNNCC 2 cut(s) 238, 337
BspMAI CTGCAG 2 cut(s) 356, 430
BspT107I GGYRCC 1 cut(s) 335
BssECI CCNNGG 4 cut(s) 37, 100, 101, 232
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 2 cut(s) 37, 232
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 2 cut(s) 464, 497
BstDEI CTNAG 2 cut(s) 79, 249
BstDSI CCRYGG 1 cut(s) 232
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 245, 494
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 81, 279, 363
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 2 cut(s) 352, 426
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 4 cut(s) 59, 338, 366, 412
BtgI CCRYGG 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 236, 392
CviAII CATG 3 cut(s) 233, 283, 344
CviJI RGCY 9 cut(s) 84, 248, 314, 351, 357, 366, 436, 453, 483
CviKI_1 RGCY 9 cut(s) 84, 248, 314, 351, 357, 366, 436, 453, 483
DdeI CTNAG 2 cut(s) 79, 249
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 2 cut(s) 464, 497
EarI CTCTTC 2 cut(s) 464, 497
Eco130I CCWWGG 2 cut(s) 37, 232
Eco47I GGWCC 2 cut(s) 236, 392
Eco57I CTGAAG 2 cut(s) 118, 287
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 37, 232
ErhI CCWWGG 2 cut(s) 37, 232
FaeI CATG 3 cut(s) 236, 286, 347
FatI CATG 3 cut(s) 232, 282, 343
Fnu4HI GCNGC 4 cut(s) 73, 352, 355, 426
Fsp4HI GCNGC 4 cut(s) 73, 352, 355, 426
GluI GCNGC 4 cut(s) 73, 352, 355, 426
Hin1II CATG 3 cut(s) 236, 286, 347
HphI GGTGA 2 cut(s) 413, 428
HpyAV CCTTC 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 215, 354, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 279, 363
HpyF3I CTNAG 2 cut(s) 79, 249
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 3 cut(s) 236, 286, 347
Kzo9I GATC 1 cut(s) 220
Lsp1109I GCAGC 4 cut(s) 59, 338, 366, 412
MaeII ACGT 1 cut(s) 128
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 451, 484, 487
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 1 cut(s) 442
MnlI CCTC 6 cut(s) 30, 216, 326, 350, 365, 467
MseI TTAA 3 cut(s) 12, 125, 198
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 81, 279, 363
NcoI CCATGG 1 cut(s) 232
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 236, 286, 347
NlaIV GGNNCC 2 cut(s) 238, 337
NspI RCATGY 1 cut(s) 286
PasI CCCWGGG 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 240
PkrI GCNGC 4 cut(s) 74, 353, 356, 427
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 238, 337
PspPI GGNCC 2 cut(s) 236, 392
PstI CTGCAG 2 cut(s) 356, 430
PsyI GACNNNGTC 1 cut(s) 240
SaqAI TTAA 3 cut(s) 12, 125, 198
SatI GCNGC 4 cut(s) 73, 352, 355, 426
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 2 cut(s) 236, 392
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 340
SetI ASST 9 cut(s) 131, 198, 296, 337, 359, 397, 418, 438, 455
SfcI CTRYAG 2 cut(s) 352, 426
SinI GGWCC 2 cut(s) 236, 392
Sse9I AATT 1 cut(s) 442
SsiI CCGC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 2 cut(s) 37, 232
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 290
TasI AATT 1 cut(s) 442
Tru1I TTAA 3 cut(s) 12, 125, 198
Tru9I TTAA 3 cut(s) 12, 125, 198
TseI GCWGC 4 cut(s) 72, 351, 354, 425
TspDTI ATGAA 2 cut(s) 286, 487
Tth111I GACNNNGTC 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 236, 392
XapI RAATTY 1 cut(s) 442
XceI RCATGY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.