FvH4_6g07260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009038
Physical Location & Seq
Reverse (-)
4366454 .. 4367691
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07260.t1

Sequence Viewer

Length: 507 bp
ATGACTTTCTGTAATTTCCCTCCAAAACAGAAGTTCCTTGGTTTCACTACTGTTCTCATTGTTGTATTTTGCTGCTTCTCAGGCTATGCAGCAGACAACCCGGGGGAGAGGTTCTTTAATGCCTTGACATGCTTCAGCAATAAGTTTATTTATTCTGGTTGTAACGAAGCGTATAGATTGAACGAAAGTGGAAACCTTAATGTGCCTCCTGATGCACTTGATTTGTTCTGCCATGGACCTTGTCTAGCTGAGACACAGCAAGTCCTGAAGTGCGTTGATAGCATGTTATCAACCTTCATTTTCAACAATAAGGCTACAACAGCAGACATTAGAGGTGCCCTCCATGACGGCTGCAGCTATACCAGCCAAAGAGGGAACTTCAATGGTTTTGGTCCTTTTGGTGAGTATATACAAGGTGTAAATGCTGCAGGGAAGCTACCAAATTTAGTCAGCTTCTTCTTCACAATCTTATGTATTGTAGGCTGTTGTCTCTACATCTTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.54

Weight (kDa)

6.04

Isoelectric Point (pI)

20.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 37 - 128 5.7e-38 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 2 cut(s) 118, 287
AgsI TTSAA 3 cut(s) 181, 304, 382
AluBI AGCT 4 cut(s) 248, 357, 436, 453
AluI AGCT 4 cut(s) 248, 357, 436, 453
Alw26I GTCTC 2 cut(s) 245, 494
Ama87I CYCGRG 1 cut(s) 100
ApeKI GCWGC 5 cut(s) 72, 89, 351, 354, 425
ApoI RAATTY 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 236, 392
AsuC2I CCSGG 2 cut(s) 101, 102
AsuHPI GGTGA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 2 cut(s) 236, 392
BaeGI GKGCMC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 335
BbvI GCAGC 5 cut(s) 59, 101, 338, 366, 412
BceAI ACGGC 1 cut(s) 364
BcnI CCSGG 2 cut(s) 101, 102
BcoDI GTCTC 2 cut(s) 245, 494
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 2 cut(s) 352, 426
BisI GCNGC 5 cut(s) 73, 90, 352, 355, 426
BlsI GCNGC 5 cut(s) 74, 91, 353, 356, 427
Bme1390I CCNGG 2 cut(s) 101, 102
Bme18I GGWCC 2 cut(s) 236, 392
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 236, 392
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 2 cut(s) 101, 102
BmsI GCATC 1 cut(s) 202
BplI GAGNNNNNCTC 2 cut(s) 324, 356
BpuMI CCSGG 2 cut(s) 101, 102
BsaJI CCNNGG 4 cut(s) 37, 100, 101, 232
BseDI CCNNGG 4 cut(s) 37, 100, 101, 232
BseMII CTCAG 2 cut(s) 93, 240
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 5 cut(s) 59, 101, 338, 366, 412
BshNI GGYRCC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 245, 494
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 340
Bsp19I CCATGG 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 92, 241
BspLI GGNNCC 1 cut(s) 337
BspMAI CTGCAG 2 cut(s) 356, 430
BspT107I GGYRCC 1 cut(s) 335
BssECI CCNNGG 4 cut(s) 37, 100, 101, 232
BssT1I CCWWGG 2 cut(s) 37, 232
Bst4CI ACNGT 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 79, 249
BstDSI CCRYGG 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 245, 494
BstMWI GCNNNNNNNGC 4 cut(s) 81, 279, 320, 363
BstNSI RCATGY 2 cut(s) 132, 286
BstSCI CCNGG 2 cut(s) 99, 100
BstSFI CTRYAG 2 cut(s) 352, 426
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 5 cut(s) 59, 101, 338, 366, 412
BtgI CCRYGG 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 236, 392
Cfr9I CCCGGG 1 cut(s) 100
CviAII CATG 4 cut(s) 129, 233, 283, 344
CviJI RGCY 9 cut(s) 84, 248, 314, 351, 357, 366, 436, 453, 483
CviKI_1 RGCY 9 cut(s) 84, 248, 314, 351, 357, 366, 436, 453, 483
DdeI CTNAG 2 cut(s) 79, 249
Eco130I CCWWGG 2 cut(s) 37, 232
Eco47I GGWCC 2 cut(s) 236, 392
Eco57I CTGAAG 2 cut(s) 118, 287
Eco88I CYCGRG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 37, 232
ErhI CCWWGG 2 cut(s) 37, 232
FaeI CATG 4 cut(s) 132, 236, 286, 347
FatI CATG 4 cut(s) 128, 232, 282, 343
Fnu4HI GCNGC 5 cut(s) 73, 90, 352, 355, 426
Fsp4HI GCNGC 5 cut(s) 73, 90, 352, 355, 426
FspBI CTAG 1 cut(s) 245
GluI GCNGC 5 cut(s) 73, 90, 352, 355, 426
HapII CCGG 1 cut(s) 101
Hin1II CATG 4 cut(s) 132, 236, 286, 347
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 413
Hpy188III TCNNGA 2 cut(s) 209, 265
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 4 cut(s) 89, 215, 354, 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 279, 320, 363
HpyF3I CTNAG 2 cut(s) 79, 249
Hsp92II CATG 4 cut(s) 132, 236, 286, 347
LpnPI CCDG 7 cut(s) 66, 114, 141, 222, 278, 376, 414
Lsp1109I GCAGC 5 cut(s) 59, 101, 338, 366, 412
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 161
MboII GAAGA 2 cut(s) 448, 451
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 2 cut(s) 13, 442
MnlI CCTC 6 cut(s) 30, 102, 216, 326, 350, 365
MseI TTAA 2 cut(s) 117, 198
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 101, 102
MwoI GCNNNNNNNGC 4 cut(s) 81, 279, 320, 363
NciI CCSGG 2 cut(s) 101, 102
NcoI CCATGG 1 cut(s) 232
NlaIII CATG 4 cut(s) 132, 236, 286, 347
NlaIV GGNNCC 1 cut(s) 337
NspI RCATGY 2 cut(s) 132, 286
PflFI GACNNNGTC 1 cut(s) 240
PkrI GCNGC 5 cut(s) 74, 91, 353, 356, 427
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 2 cut(s) 236, 392
PstI CTGCAG 2 cut(s) 356, 430
PsyI GACNNNGTC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 117, 198
SatI GCNGC 5 cut(s) 73, 90, 352, 355, 426
Sau96I GGNCC 2 cut(s) 236, 392
ScrFI CCNGG 2 cut(s) 101, 102
SduI GDGCHC 1 cut(s) 340
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 2 cut(s) 352, 426
SinI GGWCC 2 cut(s) 236, 392
SmaI CCCGGG 1 cut(s) 102
Sse9I AATT 2 cut(s) 13, 442
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 99, 100
StyI CCWWGG 2 cut(s) 37, 232
TaaI ACNGT 1 cut(s) 52
TasI AATT 2 cut(s) 13, 442
Tru1I TTAA 2 cut(s) 117, 198
Tru9I TTAA 2 cut(s) 117, 198
TseI GCWGC 5 cut(s) 72, 89, 351, 354, 425
TspDTI ATGAA 1 cut(s) 286
TspMI CCCGGG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 236, 392
XapI RAATTY 1 cut(s) 442
XceI RCATGY 2 cut(s) 132, 286
XmaI CCCGGG 1 cut(s) 100
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.