Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009038

Physical Location & Seq

Genomic Coordinates Forward (+)

19694842 .. 19695768

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCTATTATCCTCCCAAAACACAGGTTCTTCTGCCTTACTCTTCTTCTCATTGCAGCTTGTTGCTCCTACTCAGGATACGCAGAGGAAAACCCAGCGCAGACGTTTGTGACAGCCTTGGCATGTTTCAGCAACAAGTTTATTTATGCTGGTTGTAATGAAGCATACAGATTGAATGAGAGTGGAGAATTTAACGTGCCTCCTGAAGCAACTAATTCGTTCTGCCATGGGCCATGTTTTGAAGAGACGCAACAAGTTCTGAACTGCGTCGATAGAATGTTTTCAAACTTCGTTTTCGGCAATAGAGCAACACTGCCAGAGCTGAGAAGTGCACTTCGTGCTGGCTGCAGCTACACAAATCAAATAGGGAGGTTCAATGGCTTTGGGCCTTTTGGTCAGTACCAAGGTGAAACAAGCAGTGCACAGAAGCTACCAAAGTTCGTCAGTTTTTTCACGTTCTTAATTGTTACCGGGTTCTGTCTCTTCATCCTACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.51

Weight (kDa)

6.79

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56320
fragaria_vesca	FvH4_6g07260 FvH4_6g07260
malus_domestica	MD04G1195000.v1.1
prunus_persica	Prupe.6G314800_v2.0.a1
pyrus_communis	pycom04g17230
rosa_chinensis	RchiOBHm_Chr3g0456891
rosa_laevigata	RLG00000025270 RLG00000025271
rosa_multiflora	Rmu_sc0000133.1_g000015 Rmu_sc0000133.1_g000016
rosa_roxburghii	Rroxscaffold_6G00422400 Rroxscaffold_6G00422410
rosa_rugosa	Rorug03G0016600 Rorug03G0016700 Rorug03G0016800
rosa_samantha	Rh3AG077000 Rh3BG078800 Rh3CG078600 Rh3CG078700 Rh3DG080600
rosa_wichuraiana	Rw3G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	4 cut(s)	178, 245, 288, 379
AluBI	AGCT	4 cut(s)	62, 325, 354, 433
AluI	AGCT	4 cut(s)	62, 325, 354, 433
Alw21I	GWGCWC	2 cut(s)	337, 427
Alw26I	GTCTC	2 cut(s)	242, 488
Alw44I	GTGCAC	2 cut(s)	333, 423
AoxI	GGCC	2 cut(s)	233, 389
ApaLI	GTGCAC	2 cut(s)	333, 423
ApeKI	GCWGC	3 cut(s)	59, 348, 351
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	233, 389
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	1 cut(s)	422
BaeGI	GKGCMC	2 cut(s)	337, 427
Bbv12I	GWGCWC	2 cut(s)	337, 427
BbvI	GCAGC	3 cut(s)	71, 335, 363
BcgI	CGANNNNNNTGC	2 cut(s)	201, 235
BciVI	GTATCC	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	242, 488
BfmI	CTRYAG	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	74
BisI	GCNGC	3 cut(s)	60, 349, 352
BlsI	GCNGC	3 cut(s)	61, 350, 353
Bme1390I	CCNGG	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	233, 389
BmrFI	CCNGG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	475
BsaJI	CCNNGG	3 cut(s)	120, 229, 406
Bse3DI	GCAATG	1 cut(s)	54
BseDI	CCNNGG	3 cut(s)	120, 229, 406
BseGI	GGATG	1 cut(s)	489
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	90, 317
BseSI	GKGCMC	2 cut(s)	337, 427
BseXI	GCAGC	3 cut(s)	71, 335, 363
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	235, 391
BsiHKAI	GWGCWC	2 cut(s)	337, 427
BsiSI	CCGG	1 cut(s)	474
BsmAI	GTCTC	2 cut(s)	242, 488
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	235, 391
Bsp1286I	GDGCHC	2 cut(s)	337, 427
Bsp19I	CCATGG	1 cut(s)	229
BspANI	GGCC	2 cut(s)	235, 391
BspCNI	CTCAG	2 cut(s)	89, 318
BspMAI	CTGCAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	3 cut(s)	120, 229, 406
BssT1I	CCWWGG	3 cut(s)	120, 229, 406
Bst6I	CTCTTC	3 cut(s)	51, 240, 491
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	2 cut(s)	76, 326
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	242, 488
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	473
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	2 cut(s)	337, 427
BstV1I	GCAGC	3 cut(s)	71, 335, 363
BsuI	GTATCC	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	235, 391
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	489
BtsI	GCAGTG	2 cut(s)	314, 427
BtsIMutI	CAGTG	3 cut(s)	314, 427, 496
Cac8I	GCNNGC	1 cut(s)	346
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	233, 389
CseI	GACGC	2 cut(s)	259, 259
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	3 cut(s)	126, 230, 237
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	76, 326
DraIII	CACNNNGTG	1 cut(s)	341
Eam1104I	CTCTTC	3 cut(s)	51, 240, 491
EarI	CTCTTC	3 cut(s)	51, 240, 491
Eco130I	CCWWGG	3 cut(s)	120, 229, 406
Eco57I	CTGAAG	1 cut(s)	228
EcoT14I	CCWWGG	3 cut(s)	120, 229, 406
ErhI	CCWWGG	3 cut(s)	120, 229, 406
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	3 cut(s)	129, 233, 240
FaiI	YATR	5 cut(s)	127, 150, 169, 231, 238
FatI	CATG	3 cut(s)	125, 229, 236
Fnu4HI	GCNGC	3 cut(s)	60, 349, 352
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	60, 349, 352
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	3 cut(s)	60, 349, 352
GsaI	CCCAGC	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	235, 391
HapII	CCGG	1 cut(s)	474
HgaI	GACGC	2 cut(s)	259, 259
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	129, 233, 240
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	2 cut(s)	335, 425
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	78, 206
Hpy8I	GTNNAC	2 cut(s)	335, 425
Hpy99I	CGWCG	1 cut(s)	275
HpyCH4IV	ACGT	3 cut(s)	107, 198, 458
HpyCH4V	TGCA	4 cut(s)	59, 335, 351, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	2 cut(s)	76, 326
HpySE526I	ACGT	3 cut(s)	107, 198, 458
Hsp92II	CATG	3 cut(s)	129, 233, 240
HspAI	GCGC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	8 cut(s)	13, 63, 111, 138, 219, 330, 333, 487
Lsp1109I	GCAGC	3 cut(s)	71, 335, 363
MaeII	ACGT	3 cut(s)	107, 198, 458
MaeIII	GTNAC	2 cut(s)	112, 469
MboII	GAAGA	5 cut(s)	25, 38, 41, 257, 478
MhlI	GDGCHC	2 cut(s)	337, 427
MluCI	AATT	3 cut(s)	191, 217, 465
MnlI	CCTC	4 cut(s)	26, 82, 213, 366
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	2 cut(s)	195, 464
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	1 cut(s)	475
NcoI	CCATGG	1 cut(s)	229
NlaIII	CATG	3 cut(s)	129, 233, 240
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	61, 350, 353
PspFI	CCCAGC	1 cut(s)	97
PspPI	GGNCC	2 cut(s)	233, 389
PstI	CTGCAG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	195, 464
SatI	GCNGC	3 cut(s)	60, 349, 352
Sau96I	GGNCC	2 cut(s)	233, 389
ScrFI	CCNGG	1 cut(s)	475
SduI	GDGCHC	2 cut(s)	337, 427
SfcI	CTRYAG	1 cut(s)	349
Sse9I	AATT	3 cut(s)	191, 217, 465
StyD4I	CCNGG	1 cut(s)	473
StyI	CCWWGG	3 cut(s)	120, 229, 406
TaiI	ACGT	3 cut(s)	110, 201, 461
TaqI	TCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	191, 217, 465
Tru1I	TTAA	2 cut(s)	195, 464
Tru9I	TTAA	2 cut(s)	195, 464
TscAI	CASTG	2 cut(s)	321, 427
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	59, 348, 351
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	177, 478
TspRI	CASTG	2 cut(s)	321, 427
VneI	GTGCAC	2 cut(s)	333, 423
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.