Rroxscaffold_6G00422400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009038
Physical Location & Seq
Forward (+)
43310804 .. 43312441
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422400.1

Sequence Viewer

Length: 315 bp
ATGGATGAAGAAGACCTTCGGGAGAGATGCACTTGGATTGCAGTTTTGATTGTTATAGCAGAAGGTTATCGGCCATTGTTGTACGAATTGAAGATAGTCATACTACAGCTTGCCATCAGAACTGAAGGAGCATATAGATTGAACGAAAGCGGAAACCTTAATGTGCCTCCTGATGCACTTGATTTGTTCTGCCATGGACCCTGTCTGGCTGAGACACAGCTAGTGCTGAAGTGCGTTGATAGCATGTTATCGACCTTCATTTTCAATAATAAGGTTACACTACCAGATATAAGACGTGCCCTCCATGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.84

Weight (kDa)

4.79

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 42 - 102 4.2e-22 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 71
AcuI CTGAAG 2 cut(s) 144, 248
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 3 cut(s) 91, 142, 265
AjiI CACGTC 1 cut(s) 296
AluBI AGCT 2 cut(s) 109, 220
AluI AGCT 2 cut(s) 109, 220
Alw26I GTCTC 1 cut(s) 206
AoxI GGCC 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 18
BccI CCATC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 2 cut(s) 221, 313
BfmI CTRYAG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 2 cut(s) 17, 163
BpiI GAAGAC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 301
BshFI GGCC 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 104
BstSLI GKGCMC 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 193
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 82
CviAII CATG 3 cut(s) 194, 244, 305
CviJI RGCY 4 cut(s) 73, 109, 209, 220
CviKI_1 RGCY 4 cut(s) 73, 109, 209, 220
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 144, 248
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 197, 247, 308
FaiI YATR 8 cut(s) 56, 101, 133, 135, 195, 245, 290, 306
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 3 cut(s) 193, 243, 304
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 221, 313
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 3 cut(s) 197, 247, 308
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 20, 170
HpyAV CCTTC 4 cut(s) 26, 56, 119, 265
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 3 cut(s) 30, 41, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 3 cut(s) 197, 247, 308
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 4 cut(s) 183, 191, 214, 297
LweI GCATC 2 cut(s) 17, 163
MaeI CTAG 2 cut(s) 221, 313
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 274
MboII GAAGA 3 cut(s) 20, 23, 103
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 1 cut(s) 86
MnlI CCTC 2 cut(s) 177, 311
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 193
NlaIII CATG 3 cut(s) 197, 247, 308
NlaIV GGNNCC 1 cut(s) 199
NspI RCATGY 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 201
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 301
SetI ASST 8 cut(s) 18, 67, 111, 159, 222, 257, 276, 298
SfaNI GCATC 2 cut(s) 17, 163
SfcI CTRYAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 197
Sse9I AATT 1 cut(s) 86
SsiI CCGC 1 cut(s) 150
SspMI CTAG 2 cut(s) 221, 313
StyI CCWWGG 1 cut(s) 193
TaiI ACGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 251
TasI AATT 1 cut(s) 86
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TspDTI ATGAA 2 cut(s) 21, 247
Tth111I GACNNNGTC 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 197
XceI RCATGY 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 2 cut(s) 221, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.