Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009038

Physical Location & Seq

Genomic Coordinates Forward (+)

28087594 .. 28088804

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G314800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTTTTATTGCCCTCGTAACGTACAAGTTCCTCTGTTTCACTCTTGCTCTCATCGCTGTCTCTTGCTGCTACTCAGGATATGCAGAGGAGAACCCGGCGCAAACGTTTGTGACAGCCTTAGCATGCTTCAACAATAAGTTTATATATGCCGGTTGCGATGAAGCATACAGATTGAATGAGAGTGGGAACTTCAATGTCCCTCCTGAAGCAACTGATCTGTTTTGCCATGGACCATGTCTGGCTGAGACACAGCAAGTGCTAAATTGCGTTGATCACATGTTATCAGGCTTCGTTTTCAATAATAGGGCAACACTACCAGATATTAGAGGTGCACTGCGTGCTGGTTGCAGCTACACCAGCCAAAGAGGAAAGTTCAATGGTTTTGGACCTTTTGGTGAGTATATACAAGGTGAAACGAGCAATGCACAGAAGCTACCAAATTTTAGCAGCTTTTTCACTTTCTTAATTGTTACTGGATGCTCTCTCTTCATCTTACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.38

Weight (kDa)

5.51

Isoelectric Point (pI)

26.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56320
fragaria_vesca	FvH4_6g07260 FvH4_6g07260
malus_domestica	MD04G1195000.v1.1
prunus_persica	Prupe.6G314800_v2.0.a1
pyrus_communis	pycom04g17230
rosa_chinensis	RchiOBHm_Chr3g0456891
rosa_laevigata	RLG00000025270 RLG00000025271
rosa_multiflora	Rmu_sc0000133.1_g000015 Rmu_sc0000133.1_g000016
rosa_roxburghii	Rroxscaffold_6G00422400 Rroxscaffold_6G00422410
rosa_rugosa	Rorug03G0016600 Rorug03G0016700 Rorug03G0016800
rosa_samantha	Rh3AG077000 Rh3BG078800 Rh3CG078600 Rh3CG078700 Rh3DG080600
rosa_wichuraiana	Rw3G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	5 cut(s)	133, 178, 196, 301, 379
AluBI	AGCT	3 cut(s)	354, 436, 453
AluI	AGCT	3 cut(s)	354, 436, 453
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	67, 242
Alw44I	GTGCAC	1 cut(s)	333
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	69, 351, 450
ApoI	RAATTY	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	233, 389
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	410, 425
AvaII	GGWCC	2 cut(s)	233, 389
BaeGI	GKGCMC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	3 cut(s)	56, 363, 462
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	67, 242
BisI	GCNGC	3 cut(s)	70, 352, 451
BlsI	GCNGC	3 cut(s)	71, 353, 452
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	2 cut(s)	233, 389
BmgT120I	GGNCC	2 cut(s)	233, 389
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	485
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	90, 237
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	56, 363, 462
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	98, 153
BslFI	GGGAC	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	67, 242
BsmFI	GGGAC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	217, 274
Bsp19I	CCATGG	1 cut(s)	229
BspCNI	CTCAG	2 cut(s)	89, 238
BsrDI	GCAATG	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	481
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	217, 274
BssT1I	CCWWGG	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	494
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	127, 342
BstDEI	CTNAG	3 cut(s)	76, 121, 246
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	2 cut(s)	220, 277
BstMAI	GTCTC	2 cut(s)	67, 242
BstMBI	GATC	2 cut(s)	217, 274
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 56, 341, 360
BstNSI	RCATGY	2 cut(s)	129, 283
BstSCI	CCNGG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	56, 363, 462
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	2 cut(s)	40, 174
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	2 cut(s)	335, 499
Cac8I	GCNNGC	2 cut(s)	127, 342
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	233, 389
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	4 cut(s)	126, 230, 237, 280
CviJI	RGCY	8 cut(s)	5, 119, 245, 291, 354, 363, 436, 453
CviKI_1	RGCY	8 cut(s)	5, 119, 245, 291, 354, 363, 436, 453
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	76, 121, 246
DpnI	GATC	2 cut(s)	219, 276
DpnII	GATC	2 cut(s)	217, 274
DraIII	CACNNNGTG	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	233, 389
Eco57I	CTGAAG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	4 cut(s)	129, 233, 240, 283
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	4 cut(s)	125, 229, 236, 279
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	70, 352, 451
FokI	GGATG	1 cut(s)	492
Fsp4HI	GCNGC	3 cut(s)	70, 352, 451
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	3 cut(s)	70, 352, 451
HapII	CCGG	2 cut(s)	98, 153
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	4 cut(s)	129, 233, 240, 283
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HpaII	CCGG	2 cut(s)	98, 153
HphI	GGTGA	2 cut(s)	410, 425
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188III	TCNNGA	2 cut(s)	78, 206
Hpy8I	GTNNAC	1 cut(s)	335
HpyCH4IV	ACGT	2 cut(s)	23, 107
HpyCH4V	TGCA	4 cut(s)	86, 335, 351, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 56, 341, 360
HpyF3I	CTNAG	3 cut(s)	76, 121, 246
HpySE526I	ACGT	2 cut(s)	23, 107
Hsp92II	CATG	4 cut(s)	129, 233, 240, 283
HspAI	GCGC	1 cut(s)	101
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	217, 274
Lsp1109I	GCAGC	3 cut(s)	56, 363, 462
LweI	GCATC	1 cut(s)	470
MaeII	ACGT	2 cut(s)	23, 107
MaeIII	GTNAC	3 cut(s)	19, 112, 472
MalI	GATC	2 cut(s)	219, 276
MboI	GATC	2 cut(s)	217, 274
MboII	GAAGA	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	3 cut(s)	265, 442, 468
MnlI	CCTC	6 cut(s)	26, 44, 82, 213, 323, 362
MseI	TTAA	1 cut(s)	467
MspI	CCGG	2 cut(s)	98, 153
MspR9I	CCNGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	4 cut(s)	11, 56, 341, 360
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	217, 274
NlaIII	CATG	4 cut(s)	129, 233, 240, 283
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	2 cut(s)	129, 283
PaeI	GCATGC	1 cut(s)	129
PciI	ACATGT	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	71, 353, 452
PscI	ACATGT	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	233, 389
PsyI	GACNNNGTC	1 cut(s)	237
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	3 cut(s)	70, 352, 451
Sau3AI	GATC	2 cut(s)	217, 274
Sau96I	GGNCC	2 cut(s)	233, 389
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	8 cut(s)	26, 110, 334, 356, 394, 415, 438, 455
SfaNI	GCATC	1 cut(s)	470
SinI	GGWCC	2 cut(s)	233, 389
SphI	GCATGC	1 cut(s)	129
Sse9I	AATT	3 cut(s)	265, 442, 468
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	229
TaiI	ACGT	2 cut(s)	26, 110
TasI	AATT	3 cut(s)	265, 442, 468
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	69, 351, 450
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	177, 481
TspRI	CASTG	1 cut(s)	342
Tth111I	GACNNNGTC	1 cut(s)	237
VneI	GTGCAC	1 cut(s)	333
VpaK11BI	GGWCC	2 cut(s)	233, 389
XapI	RAATTY	1 cut(s)	442
XceI	RCATGY	2 cut(s)	129, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.