RLG00000025270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009038
Physical Location & Seq
Forward (+)
43504490 .. 43506830
2341 bp
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UTR
Exon/CDS
Intron
RLM00000025270

Sequence Viewer

Length: 663 bp
ATGGATGAAGAAGACCTTCGGGAGAGATGCACTTGGATTGCAGTTTTGATTGTTATAGCAGAAGGTTATCGGCCATTGCTGTACAAATTGAAGATAGTCATGCTACAGCTTGCCATCAGAACTGAAGGAGTTTCACATAGCTTCACCATTATAATGACTTTCTTTAATCTCCCTCCAAAACACAAGTTCCTTGGTTTCACTCTTGTTCTCATTGTTGTATTTTGCTGCTTCTCAGGCTATTCAGCAGATAACCCGGGGGAAAGATTTTTTAATGCCTTAACGTGCTTCAGCAATAAGTTTATCTATTCTGGTTGTGATAAAGCATATAGATTGAACGAAAGCGGAAACCTTAATGTGCCTCCTGATGCACTTGATTTGTTCTGCCATGGACCCTGTCTGGCTGAGACACAGCGAGTGCTGAAGTGCGTTGATAGCATGTTATCGACCTTCATTTTCAATAATAAGGCTACACTACAAGATATAAGAGGTGCCCTCCATGACGGCTGCAGCTATACCAGCCAAAGAGGGAACTTCAATGGTTTTGGACCTTTCAGTGAGTATATACAAGGCGAAAATGCTCCAGGGAAGCTACCAAATTTAGTCAGCTTCCTCTTCACAATCTTATGTATTACAGGCTGTTGTCTCTTCTTCATCTTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.8

Weight (kDa)

6.41

Isoelectric Point (pI)

26.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 88 - 179 1.2e-37 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 488
AciI CCGC 1 cut(s) 342
AcoI YGGCCR 1 cut(s) 71
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 3 cut(s) 144, 271, 440
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 4 cut(s) 91, 334, 457, 535
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 5 cut(s) 109, 141, 510, 589, 606
AluI AGCT 5 cut(s) 109, 141, 510, 589, 606
Alw26I GTCTC 2 cut(s) 398, 647
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 225, 504, 507
ApoI RAATTY 1 cut(s) 595
Asp700I GAANNNNTTC 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 389, 545
AsuC2I CCSGG 2 cut(s) 254, 255
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 2 cut(s) 389, 545
BaeGI GKGCMC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 212, 491, 519
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 582
BcnI CCSGG 2 cut(s) 254, 255
BcoDI GTCTC 2 cut(s) 398, 647
BfmI CTRYAG 2 cut(s) 104, 505
BisI GCNGC 3 cut(s) 226, 505, 508
BlsI GCNGC 3 cut(s) 227, 506, 509
Bme1390I CCNGG 3 cut(s) 254, 255, 582
Bme18I GGWCC 2 cut(s) 389, 545
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 389, 545
BmiI GGNNCC 2 cut(s) 391, 490
BmrFI CCNGG 3 cut(s) 254, 255, 582
BmsI GCATC 2 cut(s) 17, 355
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 477, 509
BpmI CTGGAG 1 cut(s) 564
BpuMI CCSGG 2 cut(s) 254, 255
BsaJI CCNNGG 5 cut(s) 190, 253, 254, 385, 581
Bse3DI GCAATG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 5 cut(s) 190, 253, 254, 385, 581
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 74
BseMII CTCAG 2 cut(s) 246, 393
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 3 cut(s) 212, 491, 519
BshFI GGCC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 398, 647
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 493
Bsp1407I TGTACA 1 cut(s) 81
Bsp19I CCATGG 1 cut(s) 385
BspACI CCGC 1 cut(s) 342
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 245, 394
BspLI GGNNCC 2 cut(s) 391, 490
BspMAI CTGCAG 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 81
BssECI CCNNGG 5 cut(s) 190, 253, 254, 385, 581
BssT1I CCWWGG 2 cut(s) 190, 385
Bst2UI CCWGG 1 cut(s) 582
Bst6I CTCTTC 2 cut(s) 617, 650
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 232, 402
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 398, 647
BstMWI GCNNNNNNNGC 3 cut(s) 234, 432, 516
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 3 cut(s) 252, 253, 580
BstSFI CTRYAG 2 cut(s) 104, 505
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 3 cut(s) 212, 491, 519
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 389, 545
Cfr9I CCCGGG 1 cut(s) 253
Csp6I GTAC 1 cut(s) 82
CviAII CATG 4 cut(s) 100, 386, 436, 497
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 2 cut(s) 232, 402
EaeI YGGCCR 1 cut(s) 71
Eam1104I CTCTTC 2 cut(s) 617, 650
EarI CTCTTC 2 cut(s) 617, 650
Eco130I CCWWGG 2 cut(s) 190, 385
Eco47I GGWCC 2 cut(s) 389, 545
Eco57I CTGAAG 3 cut(s) 144, 271, 440
Eco88I CYCGRG 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 2 cut(s) 190, 385
ErhI CCWWGG 2 cut(s) 190, 385
FaeI CATG 4 cut(s) 103, 389, 439, 500
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 4 cut(s) 99, 385, 435, 496
Fnu4HI GCNGC 3 cut(s) 226, 505, 508
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 226, 505, 508
GluI GCNGC 3 cut(s) 226, 505, 508
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 254
Hin1II CATG 4 cut(s) 103, 389, 439, 500
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 20, 362
HpyAV CCTTC 4 cut(s) 26, 56, 119, 457
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 4 cut(s) 30, 41, 368, 507
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 432, 516
HpyF3I CTNAG 2 cut(s) 232, 402
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 4 cut(s) 103, 389, 439, 500
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 3 cut(s) 212, 491, 519
LweI GCATC 2 cut(s) 17, 355
MaeII ACGT 1 cut(s) 281
MboII GAAGA 6 cut(s) 20, 23, 103, 604, 637, 640
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 2 cut(s) 86, 595
MnlI CCTC 6 cut(s) 183, 369, 479, 503, 518, 620
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 4 cut(s) 165, 270, 278, 351
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 3 cut(s) 254, 255, 582
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 3 cut(s) 234, 432, 516
NciI CCSGG 2 cut(s) 254, 255
NcoI CCATGG 1 cut(s) 385
NlaIII CATG 4 cut(s) 103, 389, 439, 500
NlaIV GGNNCC 2 cut(s) 391, 490
NspI RCATGY 1 cut(s) 439
PdmI GAANNNNTTC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 393
PkrI GCNGC 3 cut(s) 227, 506, 509
PsiI TTATAA 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 391, 490
PspPI GGNCC 2 cut(s) 389, 545
PstI CTGCAG 1 cut(s) 509
PsyI GACNNNGTC 1 cut(s) 393
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 4 cut(s) 165, 270, 278, 351
SatI GCNGC 3 cut(s) 226, 505, 508
Sau96I GGNCC 2 cut(s) 389, 545
ScrFI CCNGG 3 cut(s) 254, 255, 582
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 2 cut(s) 17, 355
SfcI CTRYAG 2 cut(s) 104, 505
SinI GGWCC 2 cut(s) 389, 545
SmaI CCCGGG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 2 cut(s) 86, 595
SsiI CCGC 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 252, 253, 580
StyI CCWWGG 2 cut(s) 190, 385
TaiI ACGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 443
TasI AATT 2 cut(s) 86, 595
TatI WGTACW 1 cut(s) 81
Tru1I TTAA 4 cut(s) 165, 270, 278, 351
Tru9I TTAA 4 cut(s) 165, 270, 278, 351
TscAI CASTG 1 cut(s) 559
TseI GCWGC 3 cut(s) 225, 504, 507
TspDTI ATGAA 3 cut(s) 21, 439, 640
TspMI CCCGGG 1 cut(s) 253
TspRI CASTG 1 cut(s) 559
Tth111I GACNNNGTC 1 cut(s) 393
VpaK11BI GGWCC 2 cut(s) 389, 545
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 439
XmaI CCCGGG 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.