Rh3CG078600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009038
Physical Location & Seq
Reverse (-)
6153865 .. 6154314
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG078600.1

Sequence Viewer

Length: 450 bp
ATGTCTTGCTTAATCCCAAAATCAGATGATAATAAGCTTCCCACATCTTCTAAGAAGGGTTGGAAGCACTTGAGACGTATATTCAAATCCTTCAAGAACAGTGATGACTACTACAACCATTATTATCAATACCATGTTCACTATGATGACTACAAGAAGCAGCAGCGCCGCGGCAGCGGGGCAACCAAATCATCAACAGTTGAAGCACCAATGGTGCAACACCAGGCTGTTGCTGCACGAGCTCTTACCAGTACAAGAGAAAGAGCTCATGTTCATCGTCGTAGCAAAAATGAACCTCGGGACCGAAATGCCTTAGGAGATAATGACGAAAATGGGGAGGCTGTTGATGCTGATTGTGAGAAGTTCATAGAGTGGTTCCGCGACGGGTGGAAGCTTGAGAGACAAATTTCTGCTGAAGAGTTTCGGGACATGCTGGATCGAAGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.55

Weight (kDa)

9.04

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 113 - 147 8.3e-08 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 171, 381
AciI CCGC 4 cut(s) 169, 171, 177, 379
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 3 cut(s) 85, 94, 203
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 4 cut(s) 37, 242, 266, 394
AluI AGCT 4 cut(s) 37, 242, 266, 394
Alw21I GWGCWC 2 cut(s) 244, 268
Alw26I GTCTC 2 cut(s) 67, 394
AlwI GGATC 1 cut(s) 444
Ama87I CYCGRG 1 cut(s) 297
ApeKI GCWGC 4 cut(s) 160, 163, 174, 233
ApoI RAATTY 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 1 cut(s) 301
AxyI CCTNAGG 1 cut(s) 313
BanII GRGCYC 2 cut(s) 244, 268
BauI CACGAG 1 cut(s) 237
Bbv12I GWGCWC 2 cut(s) 244, 268
BbvI GCAGC 4 cut(s) 172, 175, 186, 220
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 67, 394
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 6 cut(s) 161, 164, 169, 172, 175, 234
BlsI GCNGC 6 cut(s) 162, 165, 170, 173, 176, 235
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 302, 377
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 91, 416
BsaJI CCNNGG 2 cut(s) 169, 296
Bse1I ACTGG 1 cut(s) 249
Bse21I CCTNAGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 169, 296
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 4 cut(s) 172, 175, 186, 220
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 2 cut(s) 171, 381
BsiHKAI GWGCWC 2 cut(s) 244, 268
BsiHKCI CYCGRG 1 cut(s) 297
BslFI GGGAC 2 cut(s) 314, 440
BsmAI GTCTC 2 cut(s) 67, 394
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 2 cut(s) 314, 440
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 244, 268
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 4 cut(s) 169, 171, 177, 379
BspFNI CGCG 2 cut(s) 171, 381
BspLI GGNNCC 2 cut(s) 302, 377
BspPI GGATC 1 cut(s) 444
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 169, 296
BssMI GATC 1 cut(s) 436
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 101, 199
Bst6I CTCTTC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 51, 313, 447
BstDSI CCRYGG 1 cut(s) 169
BstFNI CGCG 2 cut(s) 171, 381
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 2 cut(s) 67, 394
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 4 cut(s) 174, 233, 239, 347
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 2 cut(s) 171, 381
BstV1I GCAGC 4 cut(s) 172, 175, 186, 220
Bsu36I CCTNAGG 1 cut(s) 313
BtgI CCRYGG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 301
Cfr42I CCGCGG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 252
CviAII CATG 3 cut(s) 134, 269, 430
CviJI RGCY 6 cut(s) 37, 227, 242, 266, 341, 394
CviKI_1 RGCY 6 cut(s) 37, 227, 242, 266, 341, 394
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 3 cut(s) 51, 313, 447
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Ecl136II GAGCTC 2 cut(s) 242, 266
Eco24I GRGCYC 2 cut(s) 244, 268
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 2 cut(s) 242, 266
Eco57I CTGAAG 1 cut(s) 435
Eco81I CCTNAGG 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 297
EcoICRI GAGCTC 2 cut(s) 242, 266
EcoRII CCWGG 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 244, 268
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 3 cut(s) 137, 272, 433
FaiI YATR 6 cut(s) 80, 135, 144, 270, 368, 431
FaqI GGGAC 2 cut(s) 314, 440
FatI CATG 3 cut(s) 133, 268, 429
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 6 cut(s) 161, 164, 169, 172, 175, 234
FriOI GRGCYC 2 cut(s) 244, 268
Fsp4HI GCNGC 6 cut(s) 161, 164, 169, 172, 175, 234
GlaI GCGC 1 cut(s) 167
GluI GCNGC 6 cut(s) 161, 164, 169, 172, 175, 234
HaeII RGCGCY 1 cut(s) 169
HhaI GCGC 1 cut(s) 168
Hin1II CATG 3 cut(s) 137, 272, 433
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 35, 392
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 94, 299, 425
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 2 cut(s) 282, 386
HpyAV CCTTC 2 cut(s) 49, 100
HpyCH4III ACNGT 2 cut(s) 101, 199
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 217, 236
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 233, 239, 347
HpyF3I CTNAG 3 cut(s) 51, 313, 447
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 3 cut(s) 137, 272, 433
HspAI GCGC 1 cut(s) 166
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 436
LpnPI CCDG 4 cut(s) 209, 236, 262, 419
Lsp1109I GCAGC 4 cut(s) 172, 175, 186, 220
LweI GCATC 1 cut(s) 337
MaeII ACGT 1 cut(s) 76
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 2 cut(s) 39, 428
MhlI GDGCHC 2 cut(s) 244, 268
MluCI AATT 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 2 cut(s) 306, 331
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 2 cut(s) 171, 177
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 171, 381
MwoI GCNNNNNNNGC 4 cut(s) 174, 233, 239, 347
NdeII GATC 1 cut(s) 436
NlaIII CATG 3 cut(s) 137, 272, 433
NlaIV GGNNCC 2 cut(s) 302, 377
NspI RCATGY 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 420
PkrI GCNGC 6 cut(s) 162, 165, 170, 173, 176, 235
Psp124BI GAGCTC 2 cut(s) 244, 268
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 302, 377
PspPI GGNCC 1 cut(s) 301
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 2 cut(s) 244, 268
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 6 cut(s) 161, 164, 169, 172, 175, 234
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 2 cut(s) 244, 268
SetI ASST 6 cut(s) 39, 79, 244, 268, 298, 396
SfaNI GCATC 1 cut(s) 337
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 70, 395
SmoI CTYRAG 2 cut(s) 70, 395
Sse9I AATT 1 cut(s) 405
SsiI CCGC 4 cut(s) 169, 171, 177, 379
SstI GAGCTC 2 cut(s) 244, 268
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 101, 199
TaiI ACGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 439
TaqII GACCGA 1 cut(s) 318
TasI AATT 1 cut(s) 405
TatI WGTACW 1 cut(s) 251
TauI GCSGC 2 cut(s) 171, 174
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 106
TseI GCWGC 4 cut(s) 160, 163, 174, 233
TspDTI ATGAA 3 cut(s) 263, 306, 355
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 405
XceI RCATGY 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.