Rh3AG077000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009038
Physical Location & Seq
Reverse (-)
6153865 .. 6160490
6626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG077000.1

Sequence Viewer

Length: 723 bp
ATGGCAGGCTATTCAGCAGACAACCCAGGGGAAAGATTTTTCAATGCCTTAACGTGCTTCAGCAATAAGTTTATCTATTCTGGTTGTGATAAAGCATATAGATTGAACGAAAGCGGAAACCTTAATGTGCCTCCTGATGCACTTGATCTGTTCTGCCATGGACCCTGTCTGGCTGAGACACAGCAAGTGCTGAAGTGCGTTGATAGCATGTTATCGACCTTCATTTTCAATAATAAGGCTACACTACCAGATATAAGAGGTGCCCTCCATGACGGCCGCAGCTATACCAGCCAAAGAGATGATAATAAGCTTCCCACATCTTCTAAGAAGGGTTGGAAGCACTTGAGACGTATATTCAAATCCTTCAAGAACAGTGATGACTACTACAACCATTATTATCAATACCATGTTCACTATGATGACTACAAGAAGCAGCAGCGCCGCGGCAGCGGGGCAACCAAATCATCAACAGTTGAAGCACCAATGGTGCAACACCAGGCTGTTGCTGCACGAGCTCTTACCAGTACAAGAGAAAGAGCTCATGTTCATCGTCGTAGCAAAAATGAACCTCGGGACCGAAATGCCTTAGGAGATAATGACGAAAATGGGGAGGCTGTTGATGCTGATTGTGAGAAGTTCATAGAGTGGTTCCGCGACGGGTGGAAGCTTGAGAGACAAATTTCTGCTGAAGAGTTTCGGGACATGCTGGATCGAAGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.64

Weight (kDa)

8.15

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 12 - 101 7.9e-33 Domain of unknown function (DUF7731)
DUF761 PF05553 204 - 238 1.8e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AccII CGCG 2 cut(s) 444, 654
AciI CCGC 6 cut(s) 114, 277, 442, 444, 450, 652
AclWI GGATC 1 cut(s) 717
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 1 cut(s) 678
AcuI CTGAAG 3 cut(s) 43, 212, 708
AfaI GTAC 1 cut(s) 526
AgsI TTSAA 6 cut(s) 43, 106, 229, 358, 367, 476
AjnI CCWGG 2 cut(s) 25, 495
AluBI AGCT 5 cut(s) 282, 310, 515, 539, 667
AluI AGCT 5 cut(s) 282, 310, 515, 539, 667
Alw21I GWGCWC 2 cut(s) 517, 541
Alw26I GTCTC 3 cut(s) 170, 340, 667
AlwI GGATC 1 cut(s) 717
Ama87I CYCGRG 1 cut(s) 570
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 5 cut(s) 279, 433, 436, 447, 506
ApoI RAATTY 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 693
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 2 cut(s) 161, 574
AvaI CYCGRG 1 cut(s) 570
AvaII GGWCC 2 cut(s) 161, 574
AxyI CCTNAGG 1 cut(s) 586
BaeGI GKGCMC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 2 cut(s) 517, 541
BauI CACGAG 1 cut(s) 510
Bbv12I GWGCWC 2 cut(s) 517, 541
BbvI GCAGC 5 cut(s) 291, 445, 448, 459, 493
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 2 cut(s) 27, 497
BcoDI GTCTC 3 cut(s) 170, 340, 667
BfoI RGCGCY 1 cut(s) 442
BisI GCNGC 8 cut(s) 277, 280, 434, 437, 442, 445, 448, 507
BlsI GCNGC 8 cut(s) 278, 281, 435, 438, 443, 446, 449, 508
Bme1390I CCNGG 2 cut(s) 27, 497
Bme18I GGWCC 2 cut(s) 161, 574
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 2 cut(s) 161, 574
BmiI GGNNCC 4 cut(s) 163, 262, 575, 650
BmrFI CCNGG 2 cut(s) 27, 497
BmsI GCATC 2 cut(s) 127, 610
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpuEI CTTGAG 2 cut(s) 364, 689
BsaJI CCNNGG 5 cut(s) 25, 26, 157, 442, 569
Bse1I ACTGG 1 cut(s) 522
Bse21I CCTNAGG 1 cut(s) 586
BseBI CCWGG 2 cut(s) 27, 497
BseDI CCNNGG 5 cut(s) 25, 26, 157, 442, 569
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 522
BseSI GKGCMC 1 cut(s) 265
BseX3I CGGCCG 1 cut(s) 274
BseXI GCAGC 5 cut(s) 291, 445, 448, 459, 493
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 2 cut(s) 444, 654
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 517, 541
BsiHKCI CYCGRG 1 cut(s) 570
BslFI GGGAC 2 cut(s) 587, 713
BsmAI GTCTC 3 cut(s) 170, 340, 667
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 2 cut(s) 587, 713
BsnI GGCC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 3 cut(s) 265, 517, 541
Bsp143I GATC 2 cut(s) 145, 709
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 6 cut(s) 114, 277, 442, 444, 450, 652
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 2 cut(s) 444, 654
BspLI GGNNCC 4 cut(s) 163, 262, 575, 650
BspPI GGATC 1 cut(s) 717
BspT107I GGYRCC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 5 cut(s) 25, 26, 157, 442, 569
BssMI GATC 2 cut(s) 145, 709
BssSI CACGAG 1 cut(s) 510
BssT1I CCWWGG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 510
Bst2UI CCWGG 2 cut(s) 27, 497
Bst4CI ACNGT 2 cut(s) 374, 472
Bst6I CTCTTC 1 cut(s) 684
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 4 cut(s) 174, 324, 586, 720
BstDSI CCRYGG 2 cut(s) 157, 442
BstFNI CGCG 2 cut(s) 444, 654
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 2 cut(s) 148, 712
BstMAI GTCTC 3 cut(s) 170, 340, 667
BstMBI GATC 2 cut(s) 145, 709
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 6 cut(s) 204, 288, 447, 506, 512, 620
BstNI CCWGG 2 cut(s) 27, 497
BstNSI RCATGY 2 cut(s) 211, 706
BstSCI CCNGG 2 cut(s) 25, 495
BstSLI GKGCMC 1 cut(s) 265
BstUI CGCG 2 cut(s) 444, 654
BstV1I GCAGC 5 cut(s) 291, 445, 448, 459, 493
BstZI CGGCCG 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 586
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 2 cut(s) 157, 442
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 441
Cfr13I GGNCC 2 cut(s) 161, 574
Cfr42I CCGCGG 1 cut(s) 445
Csp6I GTAC 1 cut(s) 525
CviAII CATG 6 cut(s) 158, 208, 269, 407, 542, 703
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 4 cut(s) 174, 324, 586, 720
DpnI GATC 2 cut(s) 147, 711
DpnII GATC 2 cut(s) 145, 709
EaeI YGGCCR 1 cut(s) 274
EagI CGGCCG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Ecl136II GAGCTC 2 cut(s) 515, 539
EclXI CGGCCG 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 2 cut(s) 517, 541
Eco47I GGWCC 2 cut(s) 161, 574
Eco52I CGGCCG 1 cut(s) 274
Eco53kI GAGCTC 2 cut(s) 515, 539
Eco57I CTGAAG 3 cut(s) 43, 212, 708
Eco81I CCTNAGG 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 570
EcoICRI GAGCTC 2 cut(s) 515, 539
EcoRII CCWGG 2 cut(s) 25, 495
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 2 cut(s) 517, 541
ErhI CCWWGG 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 6 cut(s) 161, 211, 272, 410, 545, 706
FaqI GGGAC 2 cut(s) 587, 713
FatI CATG 6 cut(s) 157, 207, 268, 406, 541, 702
FauI CCCGC 1 cut(s) 443
Fnu4HI GCNGC 8 cut(s) 277, 280, 434, 437, 442, 445, 448, 507
FriOI GRGCYC 2 cut(s) 517, 541
Fsp4HI GCNGC 8 cut(s) 277, 280, 434, 437, 442, 445, 448, 507
GlaI GCGC 1 cut(s) 440
GluI GCNGC 8 cut(s) 277, 280, 434, 437, 442, 445, 448, 507
HaeII RGCGCY 1 cut(s) 442
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 1 cut(s) 441
Hin1II CATG 6 cut(s) 161, 211, 272, 410, 545, 706
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HindIII AAGCTT 2 cut(s) 308, 665
Hpy166II GTNNAC 1 cut(s) 412
Hpy188III TCNNGA 4 cut(s) 134, 367, 572, 698
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 2 cut(s) 555, 659
HpyAV CCTTC 3 cut(s) 229, 322, 373
HpyCH4III ACNGT 2 cut(s) 374, 472
HpyCH4IV ACGT 2 cut(s) 53, 349
HpyCH4V TGCA 3 cut(s) 140, 490, 509
HpyF10VI GCNNNNNNNGC 6 cut(s) 204, 288, 447, 506, 512, 620
HpyF3I CTNAG 4 cut(s) 174, 324, 586, 720
HpySE526I ACGT 2 cut(s) 53, 349
Hsp92II CATG 6 cut(s) 161, 211, 272, 410, 545, 706
HspAI GCGC 1 cut(s) 439
KspI CCGCGG 1 cut(s) 445
Kzo9I GATC 2 cut(s) 145, 709
Lsp1109I GCAGC 5 cut(s) 291, 445, 448, 459, 493
LweI GCATC 2 cut(s) 127, 610
MaeII ACGT 2 cut(s) 53, 349
MalI GATC 2 cut(s) 147, 711
MboI GATC 2 cut(s) 145, 709
MboII GAAGA 2 cut(s) 312, 701
MhlI GDGCHC 3 cut(s) 265, 517, 541
MluCI AATT 1 cut(s) 678
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 5 cut(s) 141, 251, 275, 579, 604
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 2 cut(s) 50, 123
MslI CAYNNNNRTG 1 cut(s) 417
MspA1I CMGCKG 2 cut(s) 444, 450
MspR9I CCNGG 2 cut(s) 27, 497
MvaI CCWGG 2 cut(s) 27, 497
MvnI CGCG 2 cut(s) 444, 654
MwoI GCNNNNNNNGC 6 cut(s) 204, 288, 447, 506, 512, 620
NcoI CCATGG 1 cut(s) 157
NdeII GATC 2 cut(s) 145, 709
NlaIII CATG 6 cut(s) 161, 211, 272, 410, 545, 706
NlaIV GGNNCC 4 cut(s) 163, 262, 575, 650
NspI RCATGY 2 cut(s) 211, 706
PasI CCCWGGG 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 693
PflFI GACNNNGTC 1 cut(s) 165
PkrI GCNGC 8 cut(s) 278, 281, 435, 438, 443, 446, 449, 508
Psp124BI GAGCTC 2 cut(s) 517, 541
Psp6I CCWGG 2 cut(s) 25, 495
PspGI CCWGG 2 cut(s) 25, 495
PspN4I GGNNCC 4 cut(s) 163, 262, 575, 650
PspPI GGNCC 2 cut(s) 161, 574
PsyI GACNNNGTC 1 cut(s) 165
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 1 cut(s) 417
SacI GAGCTC 2 cut(s) 517, 541
SacII CCGCGG 1 cut(s) 445
SaqAI TTAA 2 cut(s) 50, 123
SatI GCNGC 8 cut(s) 277, 280, 434, 437, 442, 445, 448, 507
Sau3AI GATC 2 cut(s) 145, 709
Sau96I GGNCC 2 cut(s) 161, 574
ScrFI CCNGG 2 cut(s) 27, 497
SduI GDGCHC 3 cut(s) 265, 517, 541
SfaNI GCATC 2 cut(s) 127, 610
Sfr303I CCGCGG 1 cut(s) 445
SgrBI CCGCGG 1 cut(s) 445
SinI GGWCC 2 cut(s) 161, 574
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 2 cut(s) 343, 668
SmoI CTYRAG 2 cut(s) 343, 668
Sse9I AATT 1 cut(s) 678
SsiI CCGC 6 cut(s) 114, 277, 442, 444, 450, 652
SstI GAGCTC 2 cut(s) 517, 541
StyD4I CCNGG 2 cut(s) 25, 495
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 374, 472
TaiI ACGT 2 cut(s) 56, 352
TaqI TCGA 2 cut(s) 215, 712
TaqII GACCGA 1 cut(s) 591
TasI AATT 1 cut(s) 678
TatI WGTACW 1 cut(s) 524
TauI GCSGC 3 cut(s) 279, 444, 447
Tru1I TTAA 2 cut(s) 50, 123
Tru9I TTAA 2 cut(s) 50, 123
TscAI CASTG 1 cut(s) 379
TseI GCWGC 5 cut(s) 279, 433, 436, 447, 506
TspDTI ATGAA 4 cut(s) 211, 536, 579, 628
TspRI CASTG 1 cut(s) 379
Tth111I GACNNNGTC 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 161, 574
XapI RAATTY 1 cut(s) 678
XceI RCATGY 2 cut(s) 211, 706
XmnI GAANNNNTTC 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.