Rmu_sc0000133.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000133.1
OG0009038
Physical Location & Seq
Forward (+)
55669 .. 56088
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000133.1_g000015.1.cds

Sequence Viewer

Length: 333 bp
atggcaggctattcagcagacaacccaggggaaagatttttcaacgccttaacgtgcttcagcaataagtttatctattctggttgtgataaagcatatagattgaacgaaagcggaaaccttaatgtgcctcctaatgcacttgatctgttctgccatggaccctgtctggctgagacacagcaagtgctgaagtgcgttgatagcatgttatcgaccttcattttcaataataaggctacactaccagatataagaggtgccctccatgacggctgcagctataccagccaaagaggtaatctacataataagataacaggtgtaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.1

Weight (kDa)

7.61

Isoelectric Point (pI)

22.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AciI CCGC 1 cut(s) 114
AcuI CTGAAG 2 cut(s) 43, 212
AgsI TTSAA 3 cut(s) 43, 106, 229
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 276, 279
AspS9I GGNCC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 263, 291
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 2 cut(s) 277, 280
BlsI GCNGC 2 cut(s) 278, 281
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 163, 262
BmrFI CCNGG 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BsaJI CCNNGG 3 cut(s) 25, 26, 157
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 3 cut(s) 25, 26, 157
BseMII CTCAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 2 cut(s) 263, 291
BshNI GGYRCC 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 163, 262
BspMAI CTGCAG 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 25, 26, 157
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 157
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 204, 288
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 263, 291
BtgI CCRYGG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 161
CviAII CATG 3 cut(s) 158, 208, 269
CviJI RGCY 6 cut(s) 9, 173, 239, 276, 282, 291
CviKI_1 RGCY 6 cut(s) 9, 173, 239, 276, 282, 291
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 43, 212
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 3 cut(s) 161, 211, 272
FaiI YATR 8 cut(s) 97, 99, 159, 209, 254, 270, 285, 309
FatI CATG 3 cut(s) 157, 207, 268
Fnu4HI GCNGC 2 cut(s) 277, 280
Fsp4HI GCNGC 2 cut(s) 277, 280
GluI GCNGC 2 cut(s) 277, 280
Hin1II CATG 3 cut(s) 161, 211, 272
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 140, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 288
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 3 cut(s) 161, 211, 272
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 8 cut(s) 12, 39, 66, 155, 178, 261, 301, 306
Lsp1109I GCAGC 2 cut(s) 263, 291
MaeII ACGT 1 cut(s) 53
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 265
MnlI CCTC 4 cut(s) 141, 251, 275, 290
MseI TTAA 2 cut(s) 50, 123
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 204, 288
NcoI CCATGG 1 cut(s) 157
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 161, 211, 272
NlaIV GGNNCC 2 cut(s) 163, 262
NspI RCATGY 1 cut(s) 211
PasI CCCWGGG 1 cut(s) 26
PflFI GACNNNGTC 1 cut(s) 165
PkrI GCNGC 2 cut(s) 278, 281
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 163, 262
PspPI GGNCC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 281
PsyI GACNNNGTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 50, 123
SatI GCNGC 2 cut(s) 277, 280
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 265
SetI ASST 7 cut(s) 56, 123, 221, 262, 284, 301, 325
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 1 cut(s) 161
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 157
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 215
Tru1I TTAA 2 cut(s) 50, 123
Tru9I TTAA 2 cut(s) 50, 123
TseI GCWGC 2 cut(s) 276, 279
TspDTI ATGAA 1 cut(s) 211
Tth111I GACNNNGTC 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 161
XceI RCATGY 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.