RLG00000025271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009038
Physical Location & Seq
Forward (+)
43507861 .. 43508310
450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025271

Sequence Viewer

Length: 450 bp
ATGTCTTGCTTAATTCCAAAATCAGATGATAATAAGCTTCCCACATCTTCTGAGAAGGGTTGGAAGCACTTGAGACGTATATTCAAATCCTTCAAGAACAGTGATGACTACCACAAACATTATTATCAATACCATGTTCACTATGATGACTACAAGAAGCAGCAGCGCCGCGGCAGCGGGGCAACCAAATCATCAACAGTAGAATCACCAATGGTGCATCACCAGGCTGCTGCTGCACGAGCTTTTACCAGTACAAGAGAAGGAGCTCATGTTCATCGTCGTAGCAAAAATGAACCTGGGGATCGAAATGCCTTAGGAGATGATGACGAAAATGGGGAGGGTGTTGATGCTGATTGTGAGAAGTTCATAGAGTGGTTCCGCGACGGGTGGAAGCTTGAGAGACAAATTTCTGCTGAGGAGTTTCGGGACATGCTGAATCGAAGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.36

Weight (kDa)

7.84

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 113 - 147 1.1e-08 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 171, 381
AciI CCGC 4 cut(s) 169, 171, 177, 379
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 405
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 2 cut(s) 85, 94
AjnI CCWGG 2 cut(s) 222, 295
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 4 cut(s) 37, 242, 266, 394
AluI AGCT 4 cut(s) 37, 242, 266, 394
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 2 cut(s) 67, 394
AlwI GGATC 1 cut(s) 309
ApeKI GCWGC 6 cut(s) 160, 163, 174, 227, 230, 233
ApoI RAATTY 1 cut(s) 405
AspLEI GCGC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 198, 212
AxyI CCTNAGG 1 cut(s) 313
BanII GRGCYC 1 cut(s) 268
BauI CACGAG 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 6 cut(s) 172, 175, 186, 214, 217, 220
BciT130I CCWGG 2 cut(s) 224, 297
BcoDI GTCTC 2 cut(s) 67, 394
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
BlsI GCNGC 8 cut(s) 162, 165, 170, 173, 176, 229, 232, 235
Bme1390I CCNGG 2 cut(s) 224, 297
BmiI GGNNCC 1 cut(s) 377
BmrFI CCNGG 2 cut(s) 224, 297
BmsI GCATC 2 cut(s) 226, 337
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 91, 416
BsaJI CCNNGG 2 cut(s) 169, 296
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bse1I ACTGG 1 cut(s) 249
Bse21I CCTNAGG 1 cut(s) 313
BseBI CCWGG 2 cut(s) 224, 297
BseDI CCNNGG 2 cut(s) 169, 296
BseMII CTCAG 2 cut(s) 42, 405
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 6 cut(s) 172, 175, 186, 214, 217, 220
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 2 cut(s) 171, 381
BsiHKAI GWGCWC 1 cut(s) 268
BslFI GGGAC 1 cut(s) 440
BsmAI GTCTC 2 cut(s) 67, 394
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 4 cut(s) 169, 171, 177, 379
BspCNI CTCAG 2 cut(s) 43, 406
BspFNI CGCG 2 cut(s) 171, 381
BspLI GGNNCC 1 cut(s) 377
BspPI GGATC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 169, 296
BssMI GATC 1 cut(s) 301
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 224, 297
Bst4CI ACNGT 2 cut(s) 101, 199
BstDEI CTNAG 4 cut(s) 51, 313, 414, 447
BstDSI CCRYGG 1 cut(s) 169
BstFNI CGCG 2 cut(s) 171, 381
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 2 cut(s) 67, 394
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 174, 233, 239
BstNI CCWGG 2 cut(s) 224, 297
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 2 cut(s) 222, 295
BstUI CGCG 2 cut(s) 171, 381
BstV1I GCAGC 6 cut(s) 172, 175, 186, 214, 217, 220
Bsu36I CCTNAGG 1 cut(s) 313
BtgI CCRYGG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 168
Cfr42I CCGCGG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 252
CviAII CATG 3 cut(s) 134, 269, 430
CviJI RGCY 5 cut(s) 37, 227, 242, 266, 394
CviKI_1 RGCY 5 cut(s) 37, 227, 242, 266, 394
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 4 cut(s) 51, 313, 414, 447
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 222, 295
EcoT38I GRGCYC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 3 cut(s) 137, 272, 433
FaiI YATR 6 cut(s) 80, 135, 144, 270, 368, 431
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 133, 268, 429
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
GlaI GCGC 1 cut(s) 167
GluI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
HaeII RGCGCY 1 cut(s) 169
HhaI GCGC 1 cut(s) 168
Hin1II CATG 3 cut(s) 137, 272, 433
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 35, 392
HinfI GANTC 2 cut(s) 203, 436
HphI GGTGA 2 cut(s) 198, 212
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 25, 52
Hpy188III TCNNGA 2 cut(s) 94, 425
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 2 cut(s) 282, 386
HpyAV CCTTC 3 cut(s) 49, 100, 254
HpyCH4III ACNGT 2 cut(s) 101, 199
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 217, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 233, 239
HpyF3I CTNAG 4 cut(s) 51, 313, 414, 447
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 3 cut(s) 137, 272, 433
HspAI GCGC 1 cut(s) 166
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 5 cut(s) 209, 236, 262, 282, 309
Lsp1109I GCAGC 6 cut(s) 172, 175, 186, 214, 217, 220
LweI GCATC 2 cut(s) 226, 337
MaeII ACGT 1 cut(s) 76
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 2 cut(s) 12, 405
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 2 cut(s) 331, 409
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 2 cut(s) 171, 177
MspR9I CCNGG 2 cut(s) 224, 297
MvaI CCWGG 2 cut(s) 224, 297
MvnI CGCG 2 cut(s) 171, 381
MwoI GCNNNNNNNGC 3 cut(s) 174, 233, 239
NdeII GATC 1 cut(s) 301
NlaIII CATG 3 cut(s) 137, 272, 433
NlaIV GGNNCC 1 cut(s) 377
NspI RCATGY 1 cut(s) 433
PfeI GAWTC 2 cut(s) 203, 436
PkrI GCNGC 8 cut(s) 162, 165, 170, 173, 176, 229, 232, 235
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 222, 295
PspGI CCWGG 2 cut(s) 222, 295
PspN4I GGNNCC 1 cut(s) 377
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 268
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
Sau3AI GATC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 224, 297
SduI GDGCHC 1 cut(s) 268
SetI ASST 6 cut(s) 39, 79, 244, 268, 298, 396
SfaNI GCATC 2 cut(s) 226, 337
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 70, 395
SmoI CTYRAG 2 cut(s) 70, 395
Sse9I AATT 2 cut(s) 12, 405
SsiI CCGC 4 cut(s) 169, 171, 177, 379
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 222, 295
TaaI ACNGT 2 cut(s) 101, 199
TaiI ACGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 304, 439
TasI AATT 2 cut(s) 12, 405
TatI WGTACW 1 cut(s) 251
TauI GCSGC 2 cut(s) 171, 174
TfiI GAWTC 2 cut(s) 203, 436
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 106
TseI GCWGC 6 cut(s) 160, 163, 174, 227, 230, 233
TspDTI ATGAA 3 cut(s) 263, 306, 355
TspRI CASTG 1 cut(s) 106
XapI RAATTY 1 cut(s) 405
XceI RCATGY 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.