Rorug03G0016700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009038
Physical Location & Seq
Forward (+)
1321667 .. 1322962
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0016700.1

Sequence Viewer

Length: 1029 bp
ATGAGCATGAAAGTCTTTTACAGAGTGGAAAATAGTGGATTTGGGATTAGGAGACCAAACAGTGAATGGGATCCTATCAGTGTGGATTACACCTCTGGTACAACATCAAGGCCGAAGGGGGTTGTTTATAGTCACCAGGGAGCGTACCTCAATTCACTAGCTACAGTTTTGCTTCATGGAATAGGATCAATGCCTGTTTATCTATGGACTGTGCCTATGTCACATTGCAATGGATGGTGCCTCATTTGGGGTTTGGCTGCTCAGGGTGGGGCTGGCTATGGCGGGACAAGGCGGTGCTGCGACGGAAGGATTGGGCGCAGCGGCTTGTTGTTGTGTGGTGGCGGTCTGGTGGCGATCGGGCTTCTCGGCGGCGAGGGTGGCTTCTTGCTGCGCATGGTCTTGGCAAGGGGAAGTGGGCCTTGGGCCGTACCAATCATAAGTCCCCCCTCTGTTGAGCGGGGGTTTGGGTGTTTTCGGTTGTTTAGTGTGTTGATTTATTCTCAGGATCGCAATTCATTTCTTGGTGGTCAAAGTAATGGGGAGAAGCTCCCGCACATGGTCTGGCGGTATTGGGTCATGGTGCTGGAGGGAGTGGCTTTCTTCTTGAGGTTGGCTGCGGGGATGTGCGTTGCCTCTTGGGGGAGTATGGAGGTTGTGCCATGGACATGGTGTTTTTTCCGGGGACTATTTGGTTTACTATCGATGTTCTCTTGTTGTCAACGTAATTGTCATTTGTTCACGCACGTGGTCTGGTTGGTTTGGGACACGGTGCTGTTTGTGGATAGGTGGCTGTTTGTTATGTTGGATGCAGGGTCTTATCGTTACTCTCGGAAGTGGTCTCATGTTGTAGCCCGTGTGAATGGGCGAATTTGGTGGGTGGTAGTTGGGCTTGTTTGGCTCACGGAGGTCGGTCGTTTTGACTGGTTTGCCACTTATGGTTCTAGCTTGGAAGGGGTTGTGCGCGACTCATCAATCATTCGACCTGTGGATGAGGGTGAAGTCGCGGCTTGTCACACCCGTGTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.11

Weight (kDa)

9.06

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 18 - 91 3.5e-16 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 237
AccBSI CCGCTC 1 cut(s) 457
AccII CGCG 2 cut(s) 963, 1004
AclWI GGATC 4 cut(s) 65, 78, 193, 513
AcsI RAATTY 1 cut(s) 867
AcvI CACGTG 1 cut(s) 745
AfaI GTAC 3 cut(s) 100, 146, 429
AfiI CCNNNNNNNGG 3 cut(s) 247, 556, 639
AjnI CCWGG 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AleI CACNNNNGTG 2 cut(s) 743, 1017
AluBI AGCT 3 cut(s) 161, 547, 945
AluI AGCT 3 cut(s) 161, 547, 945
Alw26I GTCTC 2 cut(s) 46, 843
AlwI GGATC 4 cut(s) 65, 78, 193, 513
AoxI GGCC 3 cut(s) 110, 416, 423
ApeKI GCWGC 5 cut(s) 257, 297, 318, 388, 614
ApoI RAATTY 1 cut(s) 867
AspLEI GCGC 3 cut(s) 318, 393, 963
AspS9I GGNCC 2 cut(s) 416, 423
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 125, 1007
BamHI GGATCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 237
BbrPI CACGTG 1 cut(s) 745
BbvI GCAGC 5 cut(s) 244, 284, 330, 375, 601
BccI CCATC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 137
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 2 cut(s) 46, 843
BfaI CTAG 2 cut(s) 158, 942
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 8 cut(s) 258, 298, 319, 322, 370, 389, 615, 1005
BlsI GCNGC 8 cut(s) 259, 299, 320, 323, 371, 390, 616, 1006
Bme1390I CCNGG 2 cut(s) 137, 680
BmgT120I GGNCC 2 cut(s) 416, 423
BmiI GGNNCC 2 cut(s) 72, 239
BmrFI CCNGG 2 cut(s) 137, 680
BmsI GCATC 1 cut(s) 796
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 1 cut(s) 605
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 625
BpuMI CCSGG 1 cut(s) 680
Bsa29I ATCGAT 1 cut(s) 701
BsaAI YACGTR 1 cut(s) 745
BsaI GGTCTC 2 cut(s) 46, 843
BsaJI CCNNGG 4 cut(s) 136, 419, 659, 679
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 556, 639
Bse1I ACTGG 1 cut(s) 926
Bse3DI GCAATG 2 cut(s) 223, 235
BseBI CCWGG 1 cut(s) 137
BseCI ATCGAT 1 cut(s) 701
BseDI CCNNGG 4 cut(s) 136, 419, 659, 679
BseGI GGATG 4 cut(s) 239, 627, 811, 994
BseLI CCNNNNNNNGG 3 cut(s) 247, 556, 639
BseMI GCAATG 2 cut(s) 223, 235
BseMII CTCAG 2 cut(s) 275, 515
BseNI ACTGG 1 cut(s) 926
BseXI GCAGC 5 cut(s) 244, 284, 330, 375, 601
Bsh1236I CGCG 2 cut(s) 963, 1004
Bsh1285I CGRYCG 2 cut(s) 357, 913
BshFI GGCC 3 cut(s) 112, 418, 425
BshNI GGYRCC 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 701
BsiEI CGRYCG 2 cut(s) 357, 913
BsiSI CCGG 1 cut(s) 679
BslFI GGGAC 4 cut(s) 298, 426, 696, 776
BslI CCNNNNNNNGG 3 cut(s) 247, 556, 639
BsmAI GTCTC 2 cut(s) 46, 843
BsmFI GGGAC 4 cut(s) 298, 426, 696, 776
BsnI GGCC 3 cut(s) 112, 418, 425
Bso31I GGTCTC 2 cut(s) 46, 843
Bsp143I GATC 4 cut(s) 70, 185, 354, 505
Bsp19I CCATGG 1 cut(s) 659
BspANI GGCC 3 cut(s) 112, 418, 425
BspCNI CTCAG 2 cut(s) 274, 514
BspDI ATCGAT 1 cut(s) 701
BspFNI CGCG 2 cut(s) 963, 1004
BspLI GGNNCC 2 cut(s) 72, 239
BspPI GGATC 4 cut(s) 65, 78, 193, 513
BspT107I GGYRCC 1 cut(s) 237
BspTNI GGTCTC 2 cut(s) 46, 843
BsrBI CCGCTC 1 cut(s) 457
BsrDI GCAATG 2 cut(s) 223, 235
BsrI ACTGG 1 cut(s) 926
BssECI CCNNGG 4 cut(s) 136, 419, 659, 679
BssMI GATC 4 cut(s) 70, 185, 354, 505
BssT1I CCWWGG 2 cut(s) 419, 659
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 4 cut(s) 62, 166, 211, 769
BstBAI YACGTR 1 cut(s) 745
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 261, 501
BstDSI CCRYGG 1 cut(s) 659
BstF5I GGATG 4 cut(s) 239, 627, 811, 994
BstFNI CGCG 2 cut(s) 963, 1004
BstHHI GCGC 3 cut(s) 318, 393, 963
BstKTI GATC 4 cut(s) 73, 188, 357, 508
BstMAI GTCTC 2 cut(s) 46, 843
BstMBI GATC 4 cut(s) 70, 185, 354, 505
BstMCI CGRYCG 2 cut(s) 357, 913
BstMWI GCNNNNNNNGC 2 cut(s) 378, 895
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 135, 678
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 2 cut(s) 963, 1004
BstV1I GCAGC 5 cut(s) 244, 284, 330, 375, 601
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 666
BstYI RGATCY 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 701
BsuRI GGCC 3 cut(s) 112, 418, 425
BsuTUI ATCGAT 1 cut(s) 701
BtgI CCRYGG 1 cut(s) 659
BtsCI GGATG 4 cut(s) 239, 627, 811, 994
BtsIMutI CAGTG 2 cut(s) 67, 85
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 3 cut(s) 318, 393, 963
Cfr13I GGNCC 2 cut(s) 416, 423
ClaI ATCGAT 1 cut(s) 701
Csp6I GTAC 3 cut(s) 99, 145, 428
CviAII CATG 8 cut(s) 7, 176, 394, 556, 577, 660, 666, 842
CviQI GTAC 3 cut(s) 99, 145, 428
DdeI CTNAG 2 cut(s) 261, 501
DpnI GATC 4 cut(s) 72, 187, 356, 507
DpnII GATC 4 cut(s) 70, 185, 354, 505
Eco130I CCWWGG 2 cut(s) 419, 659
Eco31I GGTCTC 2 cut(s) 46, 843
Eco72I CACGTG 1 cut(s) 745
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 419, 659
ErhI CCWWGG 2 cut(s) 419, 659
FaeI CATG 8 cut(s) 10, 179, 397, 559, 580, 663, 669, 845
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FaqI GGGAC 4 cut(s) 298, 426, 696, 776
FatI CATG 8 cut(s) 6, 175, 393, 555, 576, 659, 665, 841
FauI CCCGC 4 cut(s) 275, 450, 558, 610
Fnu4HI GCNGC 8 cut(s) 258, 298, 319, 322, 370, 389, 615, 1005
FokI GGATG 4 cut(s) 246, 634, 818, 1001
Fsp4HI GCNGC 8 cut(s) 258, 298, 319, 322, 370, 389, 615, 1005
FspBI CTAG 2 cut(s) 158, 942
FspI TGCGCA 1 cut(s) 392
GlaI GCGC 3 cut(s) 317, 392, 962
GluI GCNGC 8 cut(s) 258, 298, 319, 322, 370, 389, 615, 1005
GsuI CTGGAG 1 cut(s) 605
HaeIII GGCC 3 cut(s) 112, 418, 425
HapII CCGG 1 cut(s) 679
HhaI GCGC 3 cut(s) 318, 393, 963
Hin1II CATG 8 cut(s) 10, 179, 397, 559, 580, 663, 669, 845
Hin6I GCGC 3 cut(s) 316, 391, 961
HinP1I GCGC 3 cut(s) 316, 391, 961
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HinfI GANTC 1 cut(s) 965
HpaII CCGG 1 cut(s) 679
HphI GGTGA 2 cut(s) 125, 1007
Hpy166II GTNNAC 3 cut(s) 695, 719, 738
Hpy188I TCNGA 1 cut(s) 831
Hpy188III TCNNGA 2 cut(s) 503, 604
Hpy8I GTNNAC 3 cut(s) 695, 719, 738
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 3 cut(s) 109, 300, 944
HpyCH4III ACNGT 4 cut(s) 62, 166, 211, 769
HpyCH4IV ACGT 2 cut(s) 721, 744
HpyCH4V TGCA 2 cut(s) 228, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 895
HpyF3I CTNAG 2 cut(s) 261, 501
HpySE526I ACGT 2 cut(s) 721, 744
Hsp92II CATG 8 cut(s) 10, 179, 397, 559, 580, 663, 669, 845
HspAI GCGC 3 cut(s) 316, 391, 961
Kzo9I GATC 4 cut(s) 70, 185, 354, 505
LmnI GCTCC 2 cut(s) 140, 552
Lsp1109I GCAGC 5 cut(s) 244, 284, 330, 375, 601
LweI GCATC 1 cut(s) 796
MaeI CTAG 2 cut(s) 158, 942
MaeII ACGT 2 cut(s) 721, 744
MaeIII GTNAC 4 cut(s) 131, 219, 821, 1010
MalI GATC 4 cut(s) 72, 187, 356, 507
MbiI CCGCTC 1 cut(s) 457
MboI GATC 4 cut(s) 70, 185, 354, 505
MboII GAAGA 1 cut(s) 592
MflI RGATCY 1 cut(s) 70
MluCI AATT 4 cut(s) 151, 511, 724, 867
MlyI GAGTC 1 cut(s) 959
MmeI TCCRAC 1 cut(s) 783
MslI CAYNNNNRTG 4 cut(s) 228, 664, 743, 1017
MspA1I CMGCKG 1 cut(s) 321
MspI CCGG 1 cut(s) 679
MspR9I CCNGG 2 cut(s) 137, 680
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 2 cut(s) 963, 1004
MwoI GCNNNNNNNGC 2 cut(s) 378, 895
NciI CCSGG 1 cut(s) 680
NcoI CCATGG 1 cut(s) 659
NdeII GATC 4 cut(s) 70, 185, 354, 505
NlaIII CATG 8 cut(s) 10, 179, 397, 559, 580, 663, 669, 845
NlaIV GGNNCC 2 cut(s) 72, 239
NmeAIII GCCGAG 1 cut(s) 345
NmuCI GTSAC 3 cut(s) 131, 219, 1010
NsbI TGCGCA 1 cut(s) 392
OliI CACNNNNGTG 2 cut(s) 743, 1017
PkrI GCNGC 8 cut(s) 259, 299, 320, 323, 371, 390, 616, 1006
Ple19I CGATCG 1 cut(s) 357
PleI GAGTC 1 cut(s) 959
PmaCI CACGTG 1 cut(s) 745
PmlI CACGTG 1 cut(s) 745
PpsI GAGTC 1 cut(s) 959
Ppu21I YACGTR 1 cut(s) 745
Psp6I CCWGG 1 cut(s) 135
PspCI CACGTG 1 cut(s) 745
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 72, 239
PspPI GGNCC 2 cut(s) 416, 423
PsuI RGATCY 1 cut(s) 70
PvuI CGATCG 1 cut(s) 357
RsaI GTAC 3 cut(s) 100, 146, 429
RsaNI GTAC 3 cut(s) 99, 145, 428
RseI CAYNNNNRTG 4 cut(s) 228, 664, 743, 1017
SatI GCNGC 8 cut(s) 258, 298, 319, 322, 370, 389, 615, 1005
Sau3AI GATC 4 cut(s) 70, 185, 354, 505
Sau96I GGNCC 2 cut(s) 416, 423
SchI GAGTC 1 cut(s) 959
ScrFI CCNGG 2 cut(s) 137, 680
SfaNI GCATC 1 cut(s) 796
SfcI CTRYAG 1 cut(s) 162
SmiMI CAYNNNNRTG 4 cut(s) 228, 664, 743, 1017
SmlI CTYRAG 1 cut(s) 604
SmoI CTYRAG 1 cut(s) 604
Sse9I AATT 4 cut(s) 151, 511, 724, 867
SspMI CTAG 2 cut(s) 158, 942
StyD4I CCNGG 2 cut(s) 135, 678
StyI CCWWGG 2 cut(s) 419, 659
TaaI ACNGT 4 cut(s) 62, 166, 211, 769
TaiI ACGT 2 cut(s) 724, 747
TaqI TCGA 2 cut(s) 701, 979
TaqII GACCGA 1 cut(s) 899
TasI AATT 4 cut(s) 151, 511, 724, 867
TauI GCSGC 3 cut(s) 324, 372, 1007
TscAI CASTG 2 cut(s) 67, 85
TseFI GTSAC 3 cut(s) 131, 219, 1010
TseI GCWGC 5 cut(s) 257, 297, 318, 388, 614
Tsp45I GTSAC 3 cut(s) 131, 219, 1010
TspDTI ATGAA 3 cut(s) 23, 164, 504
TspGWI ACGGA 2 cut(s) 318, 917
TspRI CASTG 2 cut(s) 67, 85
XapI RAATTY 1 cut(s) 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XspI CTAG 2 cut(s) 158, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.