AT1G61950

calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
22899389 .. 22902118
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61950.1

Sequence Viewer

Length: 1656 bp
ATGGGATGTCTCTGCATCAATCTGAAGAAGAAGGTCAAGAAACCAACACCAGACATCAGTGGAGAACAAAACACAGAGGTAAAGAGCAGAGAAATAACACCAAAAGAACAACCTCGTCAAAGACAACCAGCTCCAAGAGCCAAGTTCCAGATTGTGGTGCAACCTCATAAACTCCCACTTCCACTTCCTCAGCCTCAAGAAAAACAAAAGCTGATCAATCATCAAAAACAGAGCACCCTGCAACAACCAGAACCGATCTTAGGGAGACCATTTGAAGATATTAAGGAGAAGTATAGTCTTGGTCGCGAATTAGGTCGTGGCCAATTCGGTATAACGTATATATGTACAGAGATTTCATCAGGCAAGAACTTTGCTTGTAAATCCATCTTGAAGAGAAAGCTCATCAGAACTAAGGACAGAGAGGATGTAAGAAGGGAGATACAGATAATGCACTACTTATCAGGACAACCAAACATTGTGGAAATCAAAGGAGCTTATGAAGACAGACAAAGTGTTCATCTTGTAATGGAGCTTTGCGAAGGCGGTGAGCTTTTTGATAAGATCACTAAACGAGGACATTACTCAGAGAAAGCAGCCGCGGAGATCATTAGAAGTGTGGTTAAAGTTGTACAGATTTGTCATTTCATGGGTGTGATTCATCGCGACCTTAAACCCGAAAACTTCTTGTTGTCCAGTAAAGATGAAGCTTCCTCAATGCTCAAGGCTACTGATTTTGGTGTTTCAGTTTTCATCGAAGAAGGGAAAGTGTATGAAGACATTGTTGGAAGTGCATATTACGTTGCACCGGAGGTTCTGAAGAGAAACTACGGCAAAGCAATCGATATTTGGAGCGCCGGAGTTATTCTCTACATCCTTCTCTGCGGAAATCCTCCATTTTGGGCAGAGACTGATAAGGGAATATTTGAGGAGATTTTGAGAGGAGAGATTGATTTTGAGTCGGAACCATGGCCGTCGATTTCGGAGAGTGCTAAGGATTTGGTGAGAAACATGTTAAAGTATGATCCCAAGAAACGGTTTACTGCGGCTCAAGTCCTAGAACATCCTTGGATACGAGAAGGTGGAGAAGCTTCTGATAAACCAATCGATAGTGCTGTTTTGTCGCGGATGAAGCAACTCCGAGCTATGAATAAGCTTAAGAAGCTTGCATTTAAATTTATCGCGCAAAATCTCAAAGAAGAGGAACTAAAGGGTCTCAAGACAATGTTCGCAAACATGGATACCGATAAGAGCGGTACAATCACTTACGACGAATTGAAATCCGGACTGGAAAAACTCGGTTCGAGGTTAACCGAAACCGAAGTTAAGCAGCTCTTGGAAGATGCTGATGTCGATGGGAACGGTACTATTGATTACATTGAGTTCATTTCAGCTACTATGAACCGGTTCAGAGTAGAAAGAGAGGATAATTTGTTCAAAGCTTTTCAACATTTCGATAAAGATAACAGCGGGTTTATTTCGAGACAAGAATTAGAAACAGCTATGAAAGAGTATAATATGGGAGATGATATTATGATCAAAGAGATTATCTCAGAAGTTGATGCTGATAATGATGGAAGTATAAATTATCAAGAGTTTTGCAATATGATGAAGAGCTGCTCACAATCACACCAATCAAAATTGGTTCAACCGAATTAA

Protein Analysis

551

Amino Acids

62.95

Weight (kDa)

6.61

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 98 - 357 7.5e-79 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 100 - 353 6.3e-28 Protein tyrosine and serine/threonine kinase
AIF-1 PF21008 377 - 465 3.9e-06 Allograft inflammatory factor 1
EF-hand_7 PF13499 404 - 465 3.3e-13 EF-hand domain pair
EF-hand_1 PF00036 405 - 432 1.6e-06 EF hand domain
EF-hand_7 PF13499 475 - 537 3e-14 EF-hand domain pair
EF-hand_6 PF13405 477 - 503 5.5e-07 EF-hand domain
EF-hand_1 PF00036 478 - 503 1.5e-07 EF hand domain
EF-hand_1 PF00036 512 - 538 1.4e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 1251
AccII CGCG 5 cut(s) 306, 599, 663, 1123, 1181
AccIII TCCGGA 1 cut(s) 1280
AciI CCGC 8 cut(s) 543, 597, 599, 882, 1043, 1123, 1251, 1467
AclWI GGATC 1 cut(s) 1016
AcoI YGGCCR 2 cut(s) 319, 968
AcsI RAATTY 1 cut(s) 1172
AcuI CTGAAG 2 cut(s) 44, 836
AfaI GTAC 4 cut(s) 346, 630, 1255, 1363
AfiI CCNNNNNNNGG 3 cut(s) 154, 260, 1032
AflII CTTAAG 1 cut(s) 1154
AflIII ACRYGT 1 cut(s) 1008
AgeI ACCGGT 1 cut(s) 1401
AgsI TTSAA 6 cut(s) 275, 391, 1276, 1435, 1445, 1646
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AloI GAACNNNNNNTCC 2 cut(s) 1415, 1447
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 5 cut(s) 14, 259, 899, 1217, 1474
AlwI GGATC 1 cut(s) 1016
AlwNI CAGNNNCTG 1 cut(s) 908
Aor13HI TCCGGA 1 cut(s) 1280
AoxI GGCC 2 cut(s) 319, 968
ApeKI GCWGC 3 cut(s) 593, 1327, 1614
ApoI RAATTY 1 cut(s) 1172
AsiGI ACCGGT 1 cut(s) 1401
Asp700I GAANNNNTTC 1 cut(s) 1403
AspLEI GCGC 2 cut(s) 854, 1183
AsuHPI GGTGA 2 cut(s) 557, 1012
BalI TGGCCA 1 cut(s) 321
BarI GAAGNNNNNNTAC 2 cut(s) 809, 841
BbsI GAAGAC 2 cut(s) 507, 780
Bbv12I GWGCWC 1 cut(s) 236
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 605, 1339, 1601
BccI CCATC 3 cut(s) 392, 1346, 1565
BceAI ACGGC 2 cut(s) 844, 955
BcgI CGANNNNNNTGC 2 cut(s) 820, 854
BciVI GTATCC 2 cut(s) 1062, 1231
BclI TGATCA 2 cut(s) 213, 1533
BcoDI GTCTC 5 cut(s) 14, 259, 899, 1217, 1474
BfaI CTAG 1 cut(s) 1055
BfoI RGCGCY 1 cut(s) 855
BfrI CTTAAG 1 cut(s) 1154
BfuI GTATCC 2 cut(s) 1062, 1231
BisI GCNGC 5 cut(s) 594, 597, 1044, 1328, 1615
BlsI GCNGC 5 cut(s) 595, 598, 1045, 1329, 1616
BmiI GGNNCC 1 cut(s) 963
BmsI GCATC 3 cut(s) 24, 1330, 1549
BpiI GAAGAC 2 cut(s) 507, 780
BplI GAGNNNNNCTC 4 cut(s) 849, 881, 1532, 1564
Bpu10I CCTNAGC 2 cut(s) 189, 990
BpuEI CTTGAG 4 cut(s) 180, 704, 1032, 1199
Bsa29I ATCGAT 2 cut(s) 840, 1104
BsaI GGTCTC 2 cut(s) 259, 1217
BsaJI CCNNGG 3 cut(s) 597, 965, 1064
BsaWI WCCGGW 3 cut(s) 805, 1280, 1401
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 260, 1032
Bse118I RCCGGY 1 cut(s) 1401
Bse1I ACTGG 2 cut(s) 693, 1290
BseAI TCCGGA 1 cut(s) 1280
BseCI ATCGAT 2 cut(s) 840, 1104
BseDI CCNNGG 3 cut(s) 597, 965, 1064
BseGI GGATG 5 cut(s) 11, 430, 870, 1060, 1131
BseLI CCNNNNNNNGG 3 cut(s) 154, 260, 1032
BseMII CTCAG 3 cut(s) 203, 597, 1563
BseNI ACTGG 2 cut(s) 693, 1290
BseRI GAGGAG 2 cut(s) 941, 954
BseXI GCAGC 3 cut(s) 605, 1339, 1601
Bsh1236I CGCG 5 cut(s) 306, 599, 663, 1123, 1181
BshFI GGCC 2 cut(s) 321, 970
BshTI ACCGGT 1 cut(s) 1401
BshVI ATCGAT 2 cut(s) 840, 1104
BsiHKAI GWGCWC 1 cut(s) 236
BsiSI CCGG 4 cut(s) 806, 855, 1281, 1402
BslI CCNNNNNNNGG 3 cut(s) 154, 260, 1032
BsmAI GTCTC 5 cut(s) 14, 259, 899, 1217, 1474
BsnI GGCC 2 cut(s) 321, 970
Bso31I GGTCTC 2 cut(s) 259, 1217
Bsp1286I GDGCHC 1 cut(s) 236
Bsp13I TCCGGA 1 cut(s) 1280
Bsp1407I TGTACA 2 cut(s) 344, 628
Bsp143I GATC 6 cut(s) 213, 255, 561, 603, 1021, 1533
Bsp19I CCATGG 1 cut(s) 965
Bsp68I TCGCGA 2 cut(s) 306, 663
BspACI CCGC 8 cut(s) 543, 597, 599, 882, 1043, 1123, 1251, 1467
BspANI GGCC 2 cut(s) 321, 970
BspCNI CTCAG 3 cut(s) 202, 596, 1562
BspDI ATCGAT 2 cut(s) 840, 1104
BspEI TCCGGA 1 cut(s) 1280
BspFNI CGCG 5 cut(s) 306, 599, 663, 1123, 1181
BspLI GGNNCC 1 cut(s) 963
BspPI GGATC 1 cut(s) 1016
BspQI GCTCTTC 1 cut(s) 1604
BspTI CTTAAG 1 cut(s) 1154
BspTNI GGTCTC 2 cut(s) 259, 1217
BsrBI CCGCTC 1 cut(s) 1251
BsrFI RCCGGY 1 cut(s) 1401
BsrGI TGTACA 2 cut(s) 344, 628
BsrI ACTGG 2 cut(s) 693, 1290
BssAI RCCGGY 1 cut(s) 1401
BssECI CCNNGG 3 cut(s) 597, 965, 1064
BssMI GATC 6 cut(s) 213, 255, 561, 603, 1021, 1533
BssT1I CCWWGG 2 cut(s) 965, 1064
Bst4CI ACNGT 2 cut(s) 1035, 1361
Bst6I CTCTTC 4 cut(s) 386, 812, 1191, 1604
BstAFI CTTAAG 1 cut(s) 1154
BstAUI TGTACA 2 cut(s) 344, 628
BstC8I GCNNGC 1 cut(s) 1164
BstDEI CTNAG 6 cut(s) 189, 259, 411, 583, 990, 1549
BstDSI CCRYGG 2 cut(s) 597, 965
BstF5I GGATG 5 cut(s) 11, 430, 870, 1060, 1131
BstFNI CGCG 5 cut(s) 306, 599, 663, 1123, 1181
BstH2I RGCGCY 1 cut(s) 855
BstHHI GCGC 2 cut(s) 854, 1183
BstKTI GATC 6 cut(s) 216, 258, 564, 606, 1024, 1536
BstMAI GTCTC 5 cut(s) 14, 259, 899, 1217, 1474
BstMBI GATC 6 cut(s) 213, 255, 561, 603, 1021, 1533
BstMWI GCNNNNNNNGC 3 cut(s) 137, 1129, 1159
BstNSI RCATGY 1 cut(s) 1012
BstUI CGCG 5 cut(s) 306, 599, 663, 1123, 1181
BstV1I GCAGC 3 cut(s) 605, 1339, 1601
BstV2I GAAGAC 2 cut(s) 507, 780
Bsu15I ATCGAT 2 cut(s) 840, 1104
BsuI GTATCC 2 cut(s) 1062, 1231
BsuRI GGCC 2 cut(s) 321, 970
BsuTUI ATCGAT 2 cut(s) 840, 1104
BtgI CCRYGG 2 cut(s) 597, 965
BtgZI GCGATG 1 cut(s) 644
BtsCI GGATG 5 cut(s) 11, 430, 870, 1060, 1131
BtsIMutI CAGTG 1 cut(s) 64
BtuMI TCGCGA 2 cut(s) 306, 663
Cac8I GCNNGC 1 cut(s) 1164
CaiI CAGNNNCTG 1 cut(s) 908
CfoI GCGC 2 cut(s) 854, 1183
Cfr10I RCCGGY 1 cut(s) 1401
Cfr42I CCGCGG 1 cut(s) 600
ClaI ATCGAT 2 cut(s) 840, 1104
Csp6I GTAC 4 cut(s) 345, 629, 1254, 1362
CspAI ACCGGT 1 cut(s) 1401
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 4 cut(s) 646, 966, 1009, 1234
CviQI GTAC 4 cut(s) 345, 629, 1254, 1362
DdeI CTNAG 6 cut(s) 189, 259, 411, 583, 990, 1549
DpnI GATC 6 cut(s) 215, 257, 563, 605, 1023, 1535
DpnII GATC 6 cut(s) 213, 255, 561, 603, 1021, 1533
DraI TTTAAA 1 cut(s) 1171
EaeI YGGCCR 2 cut(s) 319, 968
Eam1104I CTCTTC 4 cut(s) 386, 812, 1191, 1604
EarI CTCTTC 4 cut(s) 386, 812, 1191, 1604
Eco130I CCWWGG 2 cut(s) 965, 1064
Eco31I GGTCTC 2 cut(s) 259, 1217
Eco57I CTGAAG 2 cut(s) 44, 836
EcoT14I CCWWGG 2 cut(s) 965, 1064
ErhI CCWWGG 2 cut(s) 965, 1064
FaeI CATG 4 cut(s) 649, 969, 1012, 1237
FalI AAGNNNNNCTT 2 cut(s) 1316, 1348
FatI CATG 4 cut(s) 645, 965, 1008, 1233
FauI CCCGC 1 cut(s) 1460
FbaI TGATCA 2 cut(s) 213, 1533
Fnu4HI GCNGC 5 cut(s) 594, 597, 1044, 1328, 1615
FokI GGATG 5 cut(s) 18, 437, 857, 1047, 1138
Fsp4HI GCNGC 5 cut(s) 594, 597, 1044, 1328, 1615
FspBI CTAG 1 cut(s) 1055
GlaI GCGC 2 cut(s) 853, 1182
GluI GCNGC 5 cut(s) 594, 597, 1044, 1328, 1615
HaeII RGCGCY 1 cut(s) 855
HaeIII GGCC 2 cut(s) 321, 970
HapII CCGG 4 cut(s) 806, 855, 1281, 1402
HhaI GCGC 2 cut(s) 854, 1183
Hin1II CATG 4 cut(s) 649, 969, 1012, 1237
Hin6I GCGC 2 cut(s) 852, 1181
HinP1I GCGC 2 cut(s) 852, 1181
HincII GTYRAC 1 cut(s) 1308
HindII GTYRAC 1 cut(s) 1308
HindIII AAGCTT 5 cut(s) 705, 1086, 1151, 1160, 1437
HinfI GANTC 2 cut(s) 655, 956
HpaI GTTAAC 1 cut(s) 1308
HpaII CCGG 4 cut(s) 806, 855, 1281, 1402
HphI GGTGA 2 cut(s) 557, 1012
Hpy166II GTNNAC 2 cut(s) 1038, 1308
Hpy8I GTNNAC 2 cut(s) 1038, 1308
Hpy99I CGWCG 2 cut(s) 976, 1271
HpyAV CCTTC 6 cut(s) 25, 426, 533, 752, 884, 1070
HpyCH4III ACNGT 2 cut(s) 1035, 1361
HpyCH4IV ACGT 2 cut(s) 335, 798
HpyCH4V TGCA 8 cut(s) 15, 160, 241, 451, 791, 803, 1166, 1599
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 1129, 1159
HpyF3I CTNAG 6 cut(s) 189, 259, 411, 583, 990, 1549
HpySE526I ACGT 2 cut(s) 335, 798
Hsp92II CATG 4 cut(s) 649, 969, 1012, 1237
HspAI GCGC 2 cut(s) 852, 1181
Kpn2I TCCGGA 1 cut(s) 1280
Ksp22I TGATCA 2 cut(s) 213, 1533
KspAI GTTAAC 1 cut(s) 1308
KspI CCGCGG 1 cut(s) 600
Kzo9I GATC 6 cut(s) 213, 255, 561, 603, 1021, 1533
LguI GCTCTTC 1 cut(s) 1604
LmnI GCTCC 4 cut(s) 136, 491, 529, 849
Lsp1109I GCAGC 3 cut(s) 605, 1339, 1601
LweI GCATC 3 cut(s) 24, 1330, 1549
MaeI CTAG 1 cut(s) 1055
MaeII ACGT 2 cut(s) 335, 798
MalI GATC 6 cut(s) 215, 257, 563, 605, 1023, 1535
MbiI CCGCTC 1 cut(s) 1251
MboI GATC 6 cut(s) 213, 255, 561, 603, 1021, 1533
MhlI GDGCHC 1 cut(s) 236
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 9 cut(s) 308, 323, 1172, 1271, 1426, 1487, 1582, 1637, 1651
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 1 cut(s) 965
MmeI TCCRAC 2 cut(s) 763, 939
Mox20I TGGCCA 1 cut(s) 321
MroI TCCGGA 1 cut(s) 1280
MroXI GAANNNNTTC 1 cut(s) 1403
MscI TGGCCA 1 cut(s) 321
MseI TTAA 9 cut(s) 282, 621, 669, 1013, 1155, 1170, 1307, 1323, 1654
MslI CAYNNNNRTG 1 cut(s) 650
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 2 cut(s) 599, 1467
MspCI CTTAAG 1 cut(s) 1154
MspI CCGG 4 cut(s) 806, 855, 1281, 1402
MvnI CGCG 5 cut(s) 306, 599, 663, 1123, 1181
MwoI GCNNNNNNNGC 3 cut(s) 137, 1129, 1159
NcoI CCATGG 1 cut(s) 965
NdeII GATC 6 cut(s) 213, 255, 561, 603, 1021, 1533
NlaIII CATG 4 cut(s) 649, 969, 1012, 1237
NlaIV GGNNCC 1 cut(s) 963
NruI TCGCGA 2 cut(s) 306, 663
NspI RCATGY 1 cut(s) 1012
PciI ACATGT 1 cut(s) 1008
PciSI GCTCTTC 1 cut(s) 1604
PdmI GAANNNNTTC 1 cut(s) 1403
PfeI GAWTC 1 cut(s) 655
PflMI CCANNNNNTGG 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 1401
PkrI GCNGC 5 cut(s) 595, 598, 1045, 1329, 1616
PleI GAGTC 1 cut(s) 964
PpsI GAGTC 1 cut(s) 964
PscI ACATGT 1 cut(s) 1008
PspN4I GGNNCC 1 cut(s) 963
PstNI CAGNNNCTG 1 cut(s) 908
RruI TCGCGA 2 cut(s) 306, 663
RsaI GTAC 4 cut(s) 346, 630, 1255, 1363
RsaNI GTAC 4 cut(s) 345, 629, 1254, 1362
RseI CAYNNNNRTG 1 cut(s) 650
SacII CCGCGG 1 cut(s) 600
SapI GCTCTTC 1 cut(s) 1604
SaqAI TTAA 9 cut(s) 282, 621, 669, 1013, 1155, 1170, 1307, 1323, 1654
SatI GCNGC 5 cut(s) 594, 597, 1044, 1328, 1615
Sau3AI GATC 6 cut(s) 213, 255, 561, 603, 1021, 1533
SchI GAGTC 1 cut(s) 965
SduI GDGCHC 1 cut(s) 236
SfaNI GCATC 3 cut(s) 24, 1330, 1549
Sfr303I CCGCGG 1 cut(s) 600
SgrBI CCGCGG 1 cut(s) 600
SmiI ATTTAAAT 1 cut(s) 1171
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 5 cut(s) 195, 719, 1047, 1154, 1214
SmoI CTYRAG 5 cut(s) 195, 719, 1047, 1154, 1214
Sse9I AATT 9 cut(s) 308, 323, 1172, 1271, 1426, 1487, 1582, 1637, 1651
SsiI CCGC 8 cut(s) 543, 597, 599, 882, 1043, 1123, 1251, 1467
SspI AATATT 1 cut(s) 921
SspMI CTAG 1 cut(s) 1055
StyI CCWWGG 2 cut(s) 965, 1064
SwaI ATTTAAAT 1 cut(s) 1171
TaaI ACNGT 2 cut(s) 1035, 1361
TaiI ACGT 2 cut(s) 338, 801
TaqI TCGA 8 cut(s) 753, 840, 974, 1104, 1301, 1350, 1452, 1478
TasI AATT 9 cut(s) 308, 323, 1172, 1271, 1426, 1487, 1582, 1637, 1651
TatI WGTACW 2 cut(s) 344, 628
TauI GCSGC 2 cut(s) 599, 1046
TfiI GAWTC 1 cut(s) 655
Tru1I TTAA 9 cut(s) 282, 621, 669, 1013, 1155, 1170, 1307, 1323, 1654
Tru9I TTAA 9 cut(s) 282, 621, 669, 1013, 1155, 1170, 1307, 1323, 1654
TscAI CASTG 1 cut(s) 64
TseI GCWGC 3 cut(s) 593, 1327, 1614
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 154
Vha464I CTTAAG 1 cut(s) 1154
XapI RAATTY 1 cut(s) 1172
XceI RCATGY 1 cut(s) 1012
XmnI GAANNNNTTC 1 cut(s) 1403
XspI CTAG 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.