Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002696

Physical Location & Seq

Genomic Coordinates Reverse (-)

2390307 .. 2392989

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGGTAATTGCTGCGGAAGTAAACCCCTAACAGCTTCTGATATCGTCTCGGATCAAAAGCAAGAGACGATTCTTGGGAAGCCATTGGAAGATATCAAGAAGCACTATAGCTTCGGTGACGAACTAGGCAAAGGTAATTTCGGAACAACATACTTGTGCAAAGAGAATTCAACAGGAAAGAGTTACGCTTGCAAATCCATACCTAAGAGAACTCTAAGCAGCGAAGAAGAAAAAGAAGCTGTGAAGACAGAGATTCAAATCATGGATCATGTTTCAGGACAGCCTAACATCGTACAGATCAAAGGTTCCTACGAAGATAATAATTCTATACACATTGTAATGGAATTGTGTGGTGGTGGTGAGTTATTCGACAAGATCGATGCTTTGGTCAAGTCTCATAGCTATTACTCTGAGAAAGATGCTGCTGGAATCTTTAGGTCTATTGTGAATGCTGTGAAGATTTGTCATTCTTTGGATGTCGTTCATCGTGATCTCAAGCCTGAGAACTTCTTGTTCTCTAGTAAAGATGAGAATGCTATGCTTAAAGCTATCGATTTCGGGTGTTCTGTTTACATCAAAGAAGGGAAAACTTTTGAGAGAGTTGTTGGAAGTAAATACTACATTGCTCCTGAAGTATTAGAGGGAAGCTATGGGAAAGAAATCGACATTTGGAGTGCTGGTGTTATTTTATACATCCTACTGAGCGGCGTACCGCCATTTCAAACTGGAATTGAATCTATAATTGTGTCTACTCTTTGTATTGTAGATGCTGAGATTAAAGAATGCAGGCTTGATTTTGAGAGCCAACCATGGCCTTTGATATCTTTTAAAGCGAAGCACCTTATCGGGAAGATGCTCACCAAAAAACCGAAGGAACGAATCTCTGCTGCAGATGTTCTTGAACATCCATGGATGAAAAGCGAAGCTCCAGATAAGCCTATTGATAATGTTGTCTTATCACGTATGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTTGCTCTTAAGGTTATTGCGGAGGGTCTATCGGAAGAGGAGATCAAAGGTCTTAAAACCATGTTTGAGAATATGGATATGGACAAAAGCGGGTCAATCACTTATGAAGAACTCAAAATGGGGCTGAATAGACATGGCTCTAAACTCTCTGAGACTGAAGTTAAGCAACTCATGGAAGCAGCTGATGTTGATGGGAATGGAACAATTGACTACATAGAGTTTATCTCAGCGACGATGCATAGACACCGTTTGGAACGAGATGAACATTTATACAAAGCATTCCAATACTTTGATAAAGACGGAAGCGGGCACATAACGAAGGAGGAAGTGGAGATAGCAATGAAAGAGCATGGTATGGGAGATGAAGCTAATGCCAAAGATTTGATTTCAGAATTCGATAAAAACAACGATGGAAAAATAGACTATGAGGAGTTTTGTACGATGATGAGAAATGGCATCTTGCAACCACAAGGGAAACTTGTTGGGATCCACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009751 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

498

Amino Acids

55.89

Weight (kDa)

5.58

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	36 - 305	5.5e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	38 - 242	7.3e-24	Protein tyrosine and serine/threonine kinase
EF-hand_7	PF13499	350 - 413	5.4e-11	EF-hand domain pair
EF-hand_7	PF13499	423 - 485	2.7e-16	EF-hand domain pair
EF-hand_1	PF00036	425 - 451	4.3e-06	EF hand domain
EF-hand_6	PF13405	425 - 453	3.2e-06	EF-hand domain
EF-hand_1	PF00036	461 - 486	6.4e-09	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61950 AT4G04710 AT4G04710 AT4G04710 AT4G04710 AT4G04720 AT4G04720 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G04740 AT4G21940 AT4G21940 AT4G21940
fragaria_vesca	FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130 FvH4_3g02130
malus_domestica	MD05G1345600.v1.1 MD10G1321000.v1.1
prunus_persica	Prupe.4G021300_v2.0.a1
pyrus_communis	pycom11g19140
rosa_chinensis	RchiOBHm_Chr5g0003201
rosa_laevigata	RLG00000031086
rosa_multiflora	Rmu_co8095158.1_g000001 Rmu_co8435131.1_g000001 Rmu_sc0000146.1_g000036
rosa_roxburghii	Rroxscaffold_1G00072810
rosa_rugosa	Rorug04G0401400
rosa_samantha	Rh5AG026300 Rh5BG027500 Rh5CG029100 Rh5DG025900
rosa_wichuraiana	Rw0G023540 Rw5G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	705
AccI	GTMKAC	1 cut(s)	749
AciI	CCGC	6 cut(s)	15, 705, 713, 1019, 1089, 1305
AclWI	GGATC	4 cut(s)	60, 273, 1480, 1493
AcsI	RAATTY	2 cut(s)	166, 1391
AcuI	CTGAAG	2 cut(s)	651, 1176
AfaI	GTAC	3 cut(s)	294, 711, 1438
AflII	CTTAAG	2 cut(s)	992, 1007
AgsI	TTSAA	5 cut(s)	171, 257, 722, 734, 902
Alw26I	GTCTC	4 cut(s)	52, 59, 399, 1145
AlwI	GGATC	4 cut(s)	60, 273, 1480, 1493
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	812
ApeKI	GCWGC	5 cut(s)	12, 219, 422, 887, 1178
ApoI	RAATTY	2 cut(s)	166, 1391
Asp700I	GAANNNNTTC	1 cut(s)	971
AsuHPI	GGTGA	3 cut(s)	128, 371, 850
BaeGI	GKGCMC	1 cut(s)	1311
BamHI	GGATCC	1 cut(s)	1485
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	4 cut(s)	231, 409, 874, 1190
BccI	CCATC	2 cut(s)	1184, 1403
BcoDI	GTCTC	4 cut(s)	52, 59, 399, 1145
BfaI	CTAG	2 cut(s)	125, 519
BfmI	CTRYAG	2 cut(s)	106, 888
BfrI	CTTAAG	2 cut(s)	992, 1007
BisI	GCNGC	6 cut(s)	13, 220, 423, 706, 888, 1179
BlsI	GCNGC	6 cut(s)	14, 221, 424, 707, 889, 1180
BmiI	GGNNCC	2 cut(s)	307, 1487
BmsI	GCATC	6 cut(s)	370, 409, 757, 843, 1224, 1464
BpiI	GAAGAC	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	1208, 1240
BpmI	CTGGAG	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	479
Bsa29I	ATCGAT	2 cut(s)	378, 552
BsaAI	YACGTR	1 cut(s)	962
BsaBI	GATNNNNATC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	809, 908
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bse1I	ACTGG	1 cut(s)	730
Bse3DI	GCAATG	3 cut(s)	621, 987, 1344
Bse8I	GATNNNNATC	1 cut(s)	257
BseCI	ATCGAT	2 cut(s)	378, 552
BseDI	CCNNGG	2 cut(s)	809, 908
BseGI	GGATG	4 cut(s)	481, 693, 904, 918
BseJI	GATNNNNATC	1 cut(s)	257
BseMI	GCAATG	3 cut(s)	621, 987, 1344
BseMII	CTCAG	6 cut(s)	402, 492, 692, 762, 1140, 1239
BseNI	ACTGG	1 cut(s)	730
BseRI	GAGGAG	2 cut(s)	1052, 1442
BseSI	GKGCMC	1 cut(s)	1311
BseXI	GCAGC	4 cut(s)	231, 409, 874, 1190
BshFI	GGCC	1 cut(s)	814
BshVI	ATCGAT	2 cut(s)	378, 552
BsmAI	GTCTC	4 cut(s)	52, 59, 399, 1145
BsmBI	CGTCTC	2 cut(s)	52, 59
BsmI	GAATGC	4 cut(s)	454, 538, 788, 1277
BsnI	GGCC	1 cut(s)	814
Bsp1286I	GDGCHC	1 cut(s)	1311
Bsp143I	GATC	7 cut(s)	52, 265, 297, 375, 490, 1041, 1485
Bsp19I	CCATGG	2 cut(s)	809, 908
BspACI	CCGC	6 cut(s)	15, 705, 713, 1019, 1089, 1305
BspANI	GGCC	1 cut(s)	814
BspCNI	CTCAG	6 cut(s)	403, 493, 693, 763, 1141, 1238
BspDI	ATCGAT	2 cut(s)	378, 552
BspLI	GGNNCC	2 cut(s)	307, 1487
BspMAI	CTGCAG	1 cut(s)	892
BspPI	GGATC	4 cut(s)	60, 273, 1480, 1493
BspTI	CTTAAG	2 cut(s)	992, 1007
BsrBI	CCGCTC	1 cut(s)	705
BsrDI	GCAATG	3 cut(s)	621, 987, 1344
BsrI	ACTGG	1 cut(s)	730
BssECI	CCNNGG	2 cut(s)	809, 908
BssMI	GATC	7 cut(s)	52, 265, 297, 375, 490, 1041, 1485
BssT1I	CCWWGG	2 cut(s)	809, 908
Bst4CI	ACNGT	1 cut(s)	1247
Bst6I	CTCTTC	1 cut(s)	1029
BstAFI	CTTAAG	2 cut(s)	992, 1007
BstBAI	YACGTR	1 cut(s)	962
BstC8I	GCNNGC	4 cut(s)	190, 788, 1002, 1307
BstDEI	CTNAG	8 cut(s)	204, 215, 411, 501, 701, 771, 1149, 1225
BstDSI	CCRYGG	2 cut(s)	809, 908
BstF5I	GGATG	4 cut(s)	481, 693, 904, 918
BstKTI	GATC	7 cut(s)	55, 268, 300, 378, 493, 1044, 1488
BstMAI	GTCTC	4 cut(s)	52, 59, 399, 1145
BstMBI	GATC	7 cut(s)	52, 265, 297, 375, 490, 1041, 1485
BstMWI	GCNNNNNNNGC	1 cut(s)	997
BstSFI	CTRYAG	2 cut(s)	106, 888
BstSLI	GKGCMC	1 cut(s)	1311
BstV1I	GCAGC	4 cut(s)	231, 409, 874, 1190
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	1485
BstYI	RGATCY	1 cut(s)	1485
Bsu15I	ATCGAT	2 cut(s)	378, 552
BsuRI	GGCC	1 cut(s)	814
BsuTUI	ATCGAT	2 cut(s)	378, 552
BtgI	CCRYGG	2 cut(s)	809, 908
BtsCI	GGATG	4 cut(s)	481, 693, 904, 918
Cac8I	GCNNGC	4 cut(s)	190, 788, 1002, 1307
CaiI	CAGNNNCTG	1 cut(s)	38
ClaI	ATCGAT	2 cut(s)	378, 552
Csp6I	GTAC	3 cut(s)	293, 710, 1437
CviAII	CATG	8 cut(s)	262, 269, 810, 909, 1060, 1133, 1171, 1349
CviQI	GTAC	3 cut(s)	293, 710, 1437
DdeI	CTNAG	8 cut(s)	204, 215, 411, 501, 701, 771, 1149, 1225
DpnI	GATC	7 cut(s)	54, 267, 299, 377, 492, 1043, 1487
DpnII	GATC	7 cut(s)	52, 265, 297, 375, 490, 1041, 1485
DraI	TTTAAA	1 cut(s)	829
Eam1104I	CTCTTC	1 cut(s)	1029
EarI	CTCTTC	1 cut(s)	1029
Eco130I	CCWWGG	2 cut(s)	809, 908
Eco32I	GATATC	3 cut(s)	43, 94, 822
Eco57I	CTGAAG	2 cut(s)	651, 1176
EcoRI	GAATTC	2 cut(s)	166, 1391
EcoRV	GATATC	3 cut(s)	43, 94, 822
EcoT14I	CCWWGG	2 cut(s)	809, 908
EcoT22I	ATGCAT	1 cut(s)	1239
ErhI	CCWWGG	2 cut(s)	809, 908
Esp3I	CGTCTC	2 cut(s)	52, 59
FaeI	CATG	8 cut(s)	265, 272, 813, 912, 1063, 1136, 1174, 1352
FalI	AAGNNNNNCTT	2 cut(s)	1461, 1493
FatI	CATG	8 cut(s)	261, 268, 809, 908, 1059, 1132, 1170, 1348
FauI	CCCGC	2 cut(s)	1082, 1298
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	6 cut(s)	13, 220, 423, 706, 888, 1179
FokI	GGATG	4 cut(s)	488, 680, 891, 925
Fsp4HI	GCNGC	6 cut(s)	13, 220, 423, 706, 888, 1179
FspBI	CTAG	2 cut(s)	125, 519
GluI	GCNGC	6 cut(s)	13, 220, 423, 706, 888, 1179
GsuI	CTGGAG	1 cut(s)	912
HaeIII	GGCC	1 cut(s)	814
Hin1II	CATG	8 cut(s)	265, 272, 813, 912, 1063, 1136, 1174, 1352
HindIII	AAGCTT	2 cut(s)	989, 998
HinfI	GANTC	5 cut(s)	70, 253, 429, 734, 879
HphI	GGTGA	3 cut(s)	128, 371, 850
Hpy166II	GTNNAC	3 cut(s)	23, 571, 750
Hpy188I	TCNGA	8 cut(s)	40, 52, 143, 412, 977, 1033, 1150, 1390
Hpy188III	TCNNGA	7 cut(s)	97, 276, 488, 629, 847, 899, 929
Hpy8I	GTNNAC	3 cut(s)	23, 571, 750
Hpy99I	CGWCG	1 cut(s)	1234
HpyAV	CCTTC	3 cut(s)	575, 865, 1312
HpyCH4III	ACNGT	1 cut(s)	1247
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	6 cut(s)	159, 192, 786, 890, 1237, 1462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	997
HpyF3I	CTNAG	8 cut(s)	204, 215, 411, 501, 701, 771, 1149, 1225
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	8 cut(s)	265, 272, 813, 912, 1063, 1136, 1174, 1352
Kzo9I	GATC	7 cut(s)	52, 265, 297, 375, 490, 1041, 1485
LmnI	GCTCC	2 cut(s)	631, 931
LpnPI	CCDG	9 cut(s)	159, 261, 411, 513, 642, 663, 711, 772, 942
Lsp1109I	GCAGC	4 cut(s)	231, 409, 874, 1190
LweI	GCATC	6 cut(s)	370, 409, 757, 843, 1224, 1464
MaeI	CTAG	2 cut(s)	125, 519
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	2 cut(s)	116, 182
MalI	GATC	7 cut(s)	54, 267, 299, 377, 492, 1043, 1487
MbiI	CCGCTC	1 cut(s)	705
MboI	GATC	7 cut(s)	52, 265, 297, 375, 490, 1041, 1485
MboII	GAAGA	9 cut(s)	101, 236, 239, 256, 326, 469, 862, 1046, 1118
MfeI	CAATTG	1 cut(s)	1203
MflI	RGATCY	1 cut(s)	1485
MhlI	GDGCHC	1 cut(s)	1311
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	5 cut(s)	634, 1015, 1030, 1315, 1420
Mph1103I	ATGCAT	1 cut(s)	1239
MroXI	GAANNNNTTC	1 cut(s)	971
MseI	TTAA	7 cut(s)	543, 777, 828, 993, 1008, 1053, 1161
MslI	CAYNNNNRTG	2 cut(s)	154, 338
MspA1I	CMGCKG	1 cut(s)	1181
MspCI	CTTAAG	2 cut(s)	992, 1007
MunI	CAATTG	1 cut(s)	1203
Mva1269I	GAATGC	4 cut(s)	454, 538, 788, 1277
MwoI	GCNNNNNNNGC	1 cut(s)	997
NcoI	CCATGG	2 cut(s)	809, 908
NdeII	GATC	7 cut(s)	52, 265, 297, 375, 490, 1041, 1485
NlaIII	CATG	8 cut(s)	265, 272, 813, 912, 1063, 1136, 1174, 1352
NlaIV	GGNNCC	2 cut(s)	307, 1487
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	1239
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	4 cut(s)	454, 538, 788, 1277
PdmI	GAANNNNTTC	1 cut(s)	971
PfeI	GAWTC	5 cut(s)	70, 253, 429, 734, 879
PkrI	GCNGC	6 cut(s)	14, 221, 424, 707, 889, 1180
Ppu21I	YACGTR	1 cut(s)	962
PspN4I	GGNNCC	2 cut(s)	307, 1487
PstI	CTGCAG	1 cut(s)	892
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	1485
PvuII	CAGCTG	1 cut(s)	1181
RsaI	GTAC	3 cut(s)	294, 711, 1438
RsaNI	GTAC	3 cut(s)	293, 710, 1437
RseI	CAYNNNNRTG	2 cut(s)	154, 338
SaqAI	TTAA	7 cut(s)	543, 777, 828, 993, 1008, 1053, 1161
SatI	GCNGC	6 cut(s)	13, 220, 423, 706, 888, 1179
Sau3AI	GATC	7 cut(s)	52, 265, 297, 375, 490, 1041, 1485
SduI	GDGCHC	1 cut(s)	1311
SfaNI	GCATC	6 cut(s)	370, 409, 757, 843, 1224, 1464
SfcI	CTRYAG	2 cut(s)	106, 888
SmiMI	CAYNNNNRTG	2 cut(s)	154, 338
SmlI	CTYRAG	3 cut(s)	494, 992, 1007
SmoI	CTYRAG	3 cut(s)	494, 992, 1007
SsiI	CCGC	6 cut(s)	15, 705, 713, 1019, 1089, 1305
SspMI	CTAG	2 cut(s)	125, 519
StyI	CCWWGG	2 cut(s)	809, 908
TaaI	ACNGT	1 cut(s)	1247
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	5 cut(s)	369, 378, 552, 663, 1395
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	5 cut(s)	70, 253, 429, 734, 879
Tru1I	TTAA	7 cut(s)	543, 777, 828, 993, 1008, 1053, 1161
Tru9I	TTAA	7 cut(s)	543, 777, 828, 993, 1008, 1053, 1161
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	5 cut(s)	12, 219, 422, 887, 1178
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	8 cut(s)	473, 929, 980, 998, 1119, 1275, 1355, 1377
TspGWI	ACGGA	1 cut(s)	1314
Vha464I	CTTAAG	2 cut(s)	992, 1007
XapI	RAATTY	2 cut(s)	166, 1391
XmiI	GTMKAC	1 cut(s)	749
XmnI	GAANNNNTTC	1 cut(s)	971
XspI	CTAG	2 cut(s)	125, 519
Zsp2I	ATGCAT	1 cut(s)	1239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.